RNA–Protein interactions for RNA: ENST00000636674.1

CLN6-215, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 2,005 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-215	ENST00000636674	GPR84	Q9NQS5	396 aa		12.84	□□□□□ -0.35
CLN6-215	ENST00000636674	GHRL	Q9UBU3	117 aa		12.84	□□□□□ -0.35
CLN6-215	ENST00000636674	LPAR3	Q9UBY5	353 aa		12.84	□□□□□ -0.35
CLN6-215	ENST00000636674	ARID1B	Q8NFD5	2236 aa	Predicted RBP	12.84	□□□□□ -0.35
CLN6-215	ENST00000636674	TECTA	O75443	2155 aa		12.84	□□□□□ -0.35
CLN6-215	ENST00000636674	IGHV3-20	A0A0C4DH32	117 aa		12.84	□□□□□ -0.35
CLN6-215	ENST00000636674		H3BML4	177 aa		12.84	□□□□□ -0.35
CLN6-215	ENST00000636674	KCNAB3	O43448	404 aa		12.84	□□□□□ -0.35
CLN6-215	ENST00000636674	ZNF121	P58317	390 aa	Predicted RBP	12.84	□□□□□ -0.35
CLN6-215	ENST00000636674	TAS2R46	P59540	309 aa		12.84	□□□□□ -0.35
CLN6-215	ENST00000636674	GABRE	P78334	506 aa		12.84	□□□□□ -0.35
CLN6-215	ENST00000636674	PJVK	Q0ZLH3	352 aa		12.84	□□□□□ -0.35
CLN6-215	ENST00000636674	SURF2	Q15527	256 aa	Predicted RBP	12.84	□□□□□ -0.35
CLN6-215	ENST00000636674	PLEKHN1	Q494U1	663 aa	Predicted RBP	12.84	□□□□□ -0.35
CLN6-215	ENST00000636674	HAGHL	Q6PII5	290 aa	Predicted RBP	12.84	□□□□□ -0.35
CLN6-215	ENST00000636674	ANKRD37	Q7Z713	158 aa		12.84	□□□□□ -0.35
CLN6-215	ENST00000636674	BOLL	Q8N9W6	283 aa	Known RBP	12.84	□□□□□ -0.35
CLN6-215	ENST00000636674	STT3B	Q8TCJ2	826 aa		12.84	□□□□□ -0.35
CLN6-215	ENST00000636674	TMED6	Q8WW62	240 aa		12.84	□□□□□ -0.35
CLN6-215	ENST00000636674	CNTNAP3B	Q96NU0	1288 aa		12.84	□□□□□ -0.35
CLN6-215	ENST00000636674	FGF21	Q9NSA1	209 aa		12.84	□□□□□ -0.35
CLN6-215	ENST00000636674	POLR1D	Q9Y2S0	133 aa		12.84	□□□□□ -0.35
CLN6-215	ENST00000636674	B3GALT1	Q9Y5Z6	326 aa		12.84	□□□□□ -0.35
CLN6-215	ENST00000636674	MSGN1	A6NI15	193 aa		12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	FIGNL2	A6NMB9	653 aa		12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	PIAS2	O75928	621 aa		12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	SNAPIN	O95295	136 aa		12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	PRF1	P14222	555 aa		12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	RPS2	P15880	293 aa	Known RBP	12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	PRKACA	P17612	351 aa		12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	NPY4R	P50391	375 aa		12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	ZNF41	P51814	821 aa	Predicted RBP	12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	HIST3H3	Q16695	136 aa		12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	AADACL3	Q5VUY0	350 aa		12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	RHBDD2	Q6NTF9	364 aa		12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	TMEM71	Q6P5X7	295 aa		12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	RAB11FIP2	Q7L804	512 aa		12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	SPAG16	Q8N0X2	631 aa		12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	POC1A	Q8NBT0	407 aa		12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	CADM4	Q8NFZ8	388 aa		12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	OR13G1	Q8NGZ3	307 aa		12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	OR6X1	Q8NH79	312 aa		12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	POC1B	Q8TC44	478 aa		12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	SMIM8	Q96KF7	97 aa		12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	C2orf50	Q96LR7	162 aa		12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	SPACA5	Q96QH8	159 aa		12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	SLC5A7	Q9GZV3	580 aa		12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	SLC26A1	Q9H2B4	701 aa		12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	GON4L	Q3T8J9	2241 aa		12.83	□□□□□ -0.36
CLN6-215	ENST00000636674		F8W036	122 aa		12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	CA11	O75493	328 aa		12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	ADAP1	O75689	374 aa		12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	IGLV3-1	P01715	115 aa		12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	CSTB	P04080	98 aa	Known RBP	12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	HEXA	P06865	529 aa		12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	CTSS	P25774	331 aa		12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	EIF5A	P63241	154 aa	Known RBP	12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	BLOC1S1	P78537	153 aa		12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	ANKRD55	Q3KP44	614 aa		12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	DEFB119	Q8N690	84 aa		12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	ROBO4	Q8WZ75	1007 aa		12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	ARHGAP5-AS1	Q96IT6	56 aa		12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	NUDT22	Q9BRQ3	303 aa		12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	ZNF768	Q9H5H4	540 aa	Known RBP	12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	SDHAF3	Q9NRP4	125 aa		12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	OR5AC2	Q9NZP5	309 aa		12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	PPP4R1L	Q9P1A2	415 aa		12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	ZNF319	Q9P2F9	582 aa		12.83	□□□□□ -0.36
CLN6-215	ENST00000636674	TAAR5	O14804	337 aa		12.82	□□□□□ -0.36
CLN6-215	ENST00000636674	HCK	P08631	526 aa		12.82	□□□□□ -0.36
CLN6-215	ENST00000636674	AMY2B	P19961	511 aa		12.82	□□□□□ -0.36
CLN6-215	ENST00000636674	PTGDS	P41222	190 aa		12.82	□□□□□ -0.36
CLN6-215	ENST00000636674	ZNF84	P51523	738 aa		12.82	□□□□□ -0.36
CLN6-215	ENST00000636674	AKR1C2	P52895	323 aa		12.82	□□□□□ -0.36
CLN6-215	ENST00000636674	GRB2	P62993	217 aa	Known RBP	12.82	□□□□□ -0.36
CLN6-215	ENST00000636674	ZXDA	P98168	799 aa		12.82	□□□□□ -0.36
CLN6-215	ENST00000636674	AKR1C1	Q04828	323 aa		12.82	□□□□□ -0.36
CLN6-215	ENST00000636674	SLC9A3R2	Q15599	337 aa		12.82	□□□□□ -0.36
CLN6-215	ENST00000636674	H3F3C	Q6NXT2	135 aa		12.82	□□□□□ -0.36
CLN6-215	ENST00000636674	ZNF585A	Q6P3V2	769 aa		12.82	□□□□□ -0.36
CLN6-215	ENST00000636674	WDR74	Q6RFH5	385 aa	Predicted RBP	12.82	□□□□□ -0.36
CLN6-215	ENST00000636674	COMMD2	Q86X83	199 aa		12.82	□□□□□ -0.36
CLN6-215	ENST00000636674	OR14K1	Q8NGZ2	314 aa		12.82	□□□□□ -0.36
CLN6-215	ENST00000636674	SOX7	Q9BT81	388 aa		12.82	□□□□□ -0.36
CLN6-215	ENST00000636674	OR10A2	Q9H208	303 aa		12.82	□□□□□ -0.36
CLN6-215	ENST00000636674	BANF2	Q9H503	90 aa		12.82	□□□□□ -0.36
CLN6-215	ENST00000636674	UQCC1	Q9NVA1	299 aa		12.82	□□□□□ -0.36
CLN6-215	ENST00000636674	WIF1	Q9Y5W5	379 aa		12.82	□□□□□ -0.36
CLN6-215	ENST00000636674	IGKV1-9	A0A0C4DH69	117 aa		12.81	□□□□□ -0.36
CLN6-215	ENST00000636674	LOC102725191	A0A1B0GVB3	256 aa		12.81	□□□□□ -0.36
CLN6-215	ENST00000636674	SHISA8	B8ZZ34	492 aa		12.81	□□□□□ -0.36
CLN6-215	ENST00000636674	CRTAP	O75718	401 aa	Predicted RBP	12.81	□□□□□ -0.36
CLN6-215	ENST00000636674	GLB1	P16278	677 aa		12.81	□□□□□ -0.36
CLN6-215	ENST00000636674	PVALB	P20472	110 aa	Predicted RBP	12.81	□□□□□ -0.36
CLN6-215	ENST00000636674	HOXA1	P49639	335 aa	Predicted RBP	12.81	□□□□□ -0.36
CLN6-215	ENST00000636674	SRSF3	P84103	164 aa	Known RBP	12.81	□□□□□ -0.36
CLN6-215	ENST00000636674	ARL6IP1	Q15041	203 aa		12.81	□□□□□ -0.36
CLN6-215	ENST00000636674	SHISA6	Q6ZSJ9	500 aa		12.81	□□□□□ -0.36
CLN6-215	ENST00000636674	EMG1	Q92979	244 aa	Known RBP	12.81	□□□□□ -0.36
CLN6-215	ENST00000636674	ZNF775	Q96BV0	537 aa	Predicted RBP	12.81	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms