RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 E9PLN8 166 aa9.16□□□□□ -0.94
CLN3-248ENST00000636355 ERVH48-1M5A8F1 160 aa9.16□□□□□ -0.94
CLN3-248ENST00000636355 LYZL6O75951 148 aa9.16□□□□□ -0.94
CLN3-248ENST00000636355 OCMP0CE72 109 aaPredicted RBP9.16□□□□□ -0.94
CLN3-248ENST00000636355 FAHP16930 419 aa9.16□□□□□ -0.94
CLN3-248ENST00000636355 ZNF93P35789 620 aaPredicted RBP9.16□□□□□ -0.94
CLN3-248ENST00000636355 GSK3AP49840 483 aa9.16□□□□□ -0.94
CLN3-248ENST00000636355 CASP6P55212 293 aa9.16□□□□□ -0.94
CLN3-248ENST00000636355 FAM3AP98173 230 aa9.16□□□□□ -0.94
CLN3-248ENST00000636355 SSBP1Q04837 148 aaKnown RBP9.16□□□□□ -0.94
CLN3-248ENST00000636355 SPOCK1Q08629 439 aa9.16□□□□□ -0.94
CLN3-248ENST00000636355 FOXF2Q12947 444 aa9.16□□□□□ -0.94
CLN3-248ENST00000636355 OXA1LQ15070 435 aa9.16□□□□□ -0.94
CLN3-248ENST00000636355 TIMM23BQ5SRD1 257 aa9.16□□□□□ -0.94
CLN3-248ENST00000636355 TMEM211Q6ICI0 200 aa9.16□□□□□ -0.94
CLN3-248ENST00000636355 FBXW12Q6X9E4 464 aa9.16□□□□□ -0.94
CLN3-248ENST00000636355 LHFPL2Q6ZUX7 228 aa9.16□□□□□ -0.94
CLN3-248ENST00000636355 BHLHA15Q7RTS1 189 aaPredicted RBP9.16□□□□□ -0.94
CLN3-248ENST00000636355 MRPL21Q7Z2W9 205 aaKnown RBP9.16□□□□□ -0.94
CLN3-248ENST00000636355 CDH24Q86UP0 819 aa9.16□□□□□ -0.94
CLN3-248ENST00000636355 DOLPP1Q86YN1 238 aa9.16□□□□□ -0.94
CLN3-248ENST00000636355 NAXEQ8NCW5 288 aa9.16□□□□□ -0.94
CLN3-248ENST00000636355 STEAP2Q8NFT2 490 aa9.16□□□□□ -0.94
CLN3-248ENST00000636355 OR5H6Q8NGV6 325 aa9.16□□□□□ -0.94
CLN3-248ENST00000636355 SYNPRQ8TBG9 265 aa9.16□□□□□ -0.94
CLN3-248ENST00000636355 SMIM4Q8WVI0 70 aa9.16□□□□□ -0.94
CLN3-248ENST00000636355 PHF21AQ96BD5 680 aa9.16□□□□□ -0.94
CLN3-248ENST00000636355 VKORC1Q9BQB6 163 aa9.16□□□□□ -0.94
CLN3-248ENST00000636355 REPIN1Q9BWE0 567 aaKnown RBP9.16□□□□□ -0.94
CLN3-248ENST00000636355 ASF1BQ9NVP2 202 aa9.16□□□□□ -0.94
CLN3-248ENST00000636355 ELOVL5Q9NYP7 299 aa9.16□□□□□ -0.94
CLN3-248ENST00000636355 NOP16Q9Y3C1 178 aaKnown RBP9.16□□□□□ -0.94
CLN3-248ENST00000636355 POLEQ07864 2286 aa9.16□□□□□ -0.94
CLN3-248ENST00000636355 A0A0G2JMP0 313 aa9.15□□□□□ -0.94
CLN3-248ENST00000636355 A0A0X1KG70 313 aa9.15□□□□□ -0.94
CLN3-248ENST00000636355 GGT3PA6NGU5 568 aa9.15□□□□□ -0.94
CLN3-248ENST00000636355 H3BSH0 61 aa9.15□□□□□ -0.94
CLN3-248ENST00000636355 XRCC3O43542 346 aa9.15□□□□□ -0.94
CLN3-248ENST00000636355 LMX1BO60663 402 aa9.15□□□□□ -0.94
CLN3-248ENST00000636355 CST4P01036 141 aa9.15□□□□□ -0.94
CLN3-248ENST00000636355 HCKP08631 526 aa9.15□□□□□ -0.94
CLN3-248ENST00000636355 CSF3P09919 207 aa9.15□□□□□ -0.94
CLN3-248ENST00000636355 ANOS1P23352 680 aa9.15□□□□□ -0.94
CLN3-248ENST00000636355 IL32P24001 234 aa9.15□□□□□ -0.94
CLN3-248ENST00000636355 ACKR3P25106 362 aa9.15□□□□□ -0.94
CLN3-248ENST00000636355 AZGP1P25311 298 aaKnown RBP9.15□□□□□ -0.94
CLN3-248ENST00000636355 IFITM3Q01628 133 aa9.15□□□□□ -0.94
CLN3-248ENST00000636355 ZNF92Q03936 586 aa9.15□□□□□ -0.94
CLN3-248ENST00000636355 TRIM16LQ309B1 348 aa9.15□□□□□ -0.94
CLN3-248ENST00000636355 TMEM69Q5SWH9 247 aa9.15□□□□□ -0.94
CLN3-248ENST00000636355 NAA40Q86UY6 237 aa9.15□□□□□ -0.94
CLN3-248ENST00000636355 CXorf67Q86X51 503 aaPredicted RBP9.15□□□□□ -0.94
CLN3-248ENST00000636355 CMTM4Q8IZR5 234 aa9.15□□□□□ -0.94
CLN3-248ENST00000636355 OR8H2Q8N162 312 aa9.15□□□□□ -0.94
CLN3-248ENST00000636355 ZNF610Q8N9Z0 462 aa9.15□□□□□ -0.94
CLN3-248ENST00000636355 OR4M2Q8NGB6 313 aa9.15□□□□□ -0.94
CLN3-248ENST00000636355 OR52N4Q8NGI2 321 aa9.15□□□□□ -0.94
CLN3-248ENST00000636355 OR2AE1Q8NHA4 323 aa9.15□□□□□ -0.94
CLN3-248ENST00000636355 KCNG3Q8TAE7 436 aa9.15□□□□□ -0.94
CLN3-248ENST00000636355 TRIM63Q969Q1 353 aa9.15□□□□□ -0.94
CLN3-248ENST00000636355 POM121Q96HA1 1249 aa9.15□□□□□ -0.94
CLN3-248ENST00000636355 C7orf50Q9BRJ6 194 aaKnown RBP9.15□□□□□ -0.94
CLN3-248ENST00000636355 CST11Q9H112 138 aa9.15□□□□□ -0.94
CLN3-248ENST00000636355 OPN3Q9H1Y3 402 aaPredicted RBP9.15□□□□□ -0.94
CLN3-248ENST00000636355 CDH20Q9HBT6 801 aa9.15□□□□□ -0.94
CLN3-248ENST00000636355 DIABLOQ9NR28 239 aa9.15□□□□□ -0.94
CLN3-248ENST00000636355 EIF3KQ9UBQ5 218 aaKnown RBP9.15□□□□□ -0.94
CLN3-248ENST00000636355 RAB22AQ9UL26 194 aa9.15□□□□□ -0.94
CLN3-248ENST00000636355 A0A0B4J203 849 aa9.14□□□□□ -0.95
CLN3-248ENST00000636355 IGKV1-9A0A0C4DH69 117 aa9.14□□□□□ -0.95
CLN3-248ENST00000636355 TMEM272A0A1B0GTI8 110 aa9.14□□□□□ -0.95
CLN3-248ENST00000636355 A0A1W2PQ09 198 aa9.14□□□□□ -0.95
CLN3-248ENST00000636355 C5orf63A6NC05 138 aa9.14□□□□□ -0.95
CLN3-248ENST00000636355 METTL21EPA6NDL7 271 aa9.14□□□□□ -0.95
CLN3-248ENST00000636355 GABARAPH6UMI1 98 aa9.14□□□□□ -0.95
CLN3-248ENST00000636355 SMPD2O60906 423 aa9.14□□□□□ -0.95
CLN3-248ENST00000636355 CTAG2O75638 210 aa9.14□□□□□ -0.95
CLN3-248ENST00000636355 NAT2P11245 290 aa9.14□□□□□ -0.95
CLN3-248ENST00000636355 SELEP16581 610 aa9.14□□□□□ -0.95
CLN3-248ENST00000636355 CLDN12P56749 244 aa9.14□□□□□ -0.95
CLN3-248ENST00000636355 AP3S2P59780 193 aa9.14□□□□□ -0.95
CLN3-248ENST00000636355 GK2Q14410 553 aaPredicted RBP9.14□□□□□ -0.95
CLN3-248ENST00000636355 ARL6IP1Q15041 203 aa9.14□□□□□ -0.95
CLN3-248ENST00000636355 P2RY14Q15391 338 aa9.14□□□□□ -0.95
CLN3-248ENST00000636355 KISS1Q15726 138 aa9.14□□□□□ -0.95
CLN3-248ENST00000636355 C2orf76Q3KRA6 126 aa9.14□□□□□ -0.95
CLN3-248ENST00000636355 AWAT2Q6E213 333 aa9.14□□□□□ -0.95
CLN3-248ENST00000636355 DCDC5Q6ZRR9 648 aa9.14□□□□□ -0.95
CLN3-248ENST00000636355 DNM1P46Q6ZS02 220 aa9.14□□□□□ -0.95
CLN3-248ENST00000636355 WDR31Q8NA23 367 aa9.14□□□□□ -0.95
CLN3-248ENST00000636355 OR51D1Q8NGF3 324 aa9.14□□□□□ -0.95
CLN3-248ENST00000636355 OR4D6Q8NGJ1 314 aa9.14□□□□□ -0.95
CLN3-248ENST00000636355 RFT1Q96AA3 541 aa9.14□□□□□ -0.95
CLN3-248ENST00000636355 DMRTA2Q96SC8 542 aa9.14□□□□□ -0.95
CLN3-248ENST00000636355 BCL2L14Q9BZR8 327 aa9.14□□□□□ -0.95
CLN3-248ENST00000636355 CNTD2Q9H8S5 307 aa9.14□□□□□ -0.95
CLN3-248ENST00000636355 PCDHB16Q9NRJ7 776 aa9.14□□□□□ -0.95
CLN3-248ENST00000636355 IL36GQ9NZH8 169 aa9.14□□□□□ -0.95
CLN3-248ENST00000636355 JKAMPQ9P055 326 aa9.14□□□□□ -0.95
CLN3-248ENST00000636355 CGGBP1Q9UFW8 167 aaPredicted RBP9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms