RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 C4orf36Q96KX1 117 aa15.35■□□□□ 0.05
CLN3-243ENST00000635973 OR2V2Q96R30 315 aa15.35■□□□□ 0.05
CLN3-243ENST00000635973 GPR84Q9NQS5 396 aa15.35■□□□□ 0.05
CLN3-243ENST00000635973 ERVK13-1Q9NX77 482 aa15.35■□□□□ 0.05
CLN3-243ENST00000635973 MRPL15Q9P015 296 aaKnown RBP15.35■□□□□ 0.05
CLN3-243ENST00000635973 IGHV1-69-2A0A0G2JMI3 117 aa15.34■□□□□ 0.05
CLN3-243ENST00000635973 EFCAB10A6NFE3 127 aa15.34■□□□□ 0.05
CLN3-243ENST00000635973 SRSF10O75494 262 aaKnown RBP15.34■□□□□ 0.05
CLN3-243ENST00000635973 ACHEP22303 614 aa15.34■□□□□ 0.05
CLN3-243ENST00000635973 DCKP27707 260 aa15.34■□□□□ 0.05
CLN3-243ENST00000635973 GNALP38405 381 aa15.34■□□□□ 0.05
CLN3-243ENST00000635973 SRP9P49458 86 aaKnown RBP15.34■□□□□ 0.05
CLN3-243ENST00000635973 MRPS11P82912 194 aaKnown RBP15.34■□□□□ 0.05
CLN3-243ENST00000635973 MED21Q13503 144 aa15.34■□□□□ 0.05
CLN3-243ENST00000635973 HFEQ30201 348 aa15.34■□□□□ 0.05
CLN3-243ENST00000635973 ELMOD2Q8IZ81 293 aa15.34■□□□□ 0.05
CLN3-243ENST00000635973 ITLN1Q8WWA0 313 aa15.34■□□□□ 0.05
CLN3-243ENST00000635973 RORBQ92753 470 aa15.34■□□□□ 0.05
CLN3-243ENST00000635973 LYZL4Q96KX0 146 aa15.34■□□□□ 0.05
CLN3-243ENST00000635973 PAPOLGQ9BWT3 736 aaKnown RBP15.34■□□□□ 0.05
CLN3-243ENST00000635973 FGF20Q9NP95 211 aaPredicted RBP15.34■□□□□ 0.05
CLN3-243ENST00000635973 G6PC2Q9NQR9 355 aa15.34■□□□□ 0.05
CLN3-243ENST00000635973 CHCHD3Q9NX63 227 aaKnown RBP15.34■□□□□ 0.05
CLN3-243ENST00000635973 IL19Q9UHD0 177 aa15.34■□□□□ 0.05
CLN3-243ENST00000635973 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP15.33■□□□□ 0.057e-9■■□□□ 13.5
CLN3-243ENST00000635973 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP15.33■□□□□ 0.04
CLN3-243ENST00000635973 F5H5P2 479 aa15.33■□□□□ 0.04
CLN3-243ENST00000635973 H0YL77 283 aa15.33■□□□□ 0.04
CLN3-243ENST00000635973 MLNRO43193 412 aa15.33■□□□□ 0.04
CLN3-243ENST00000635973 XPNPEP2O43895 674 aa15.33■□□□□ 0.04
CLN3-243ENST00000635973 TTRP02766 147 aa15.33■□□□□ 0.04
CLN3-243ENST00000635973 HTR1AP08908 422 aa15.33■□□□□ 0.04
CLN3-243ENST00000635973 MYF6P23409 242 aa15.33■□□□□ 0.04
CLN3-243ENST00000635973 COL8A2P25067 703 aa15.33■□□□□ 0.04
CLN3-243ENST00000635973 THBS2P35442 1172 aa15.33■□□□□ 0.04
CLN3-243ENST00000635973 OR8B8Q15620 311 aa15.33■□□□□ 0.04
CLN3-243ENST00000635973 ODF4Q2M2E3 257 aa15.33■□□□□ 0.04
CLN3-243ENST00000635973 AHSA2Q719I0 299 aa15.33■□□□□ 0.04
CLN3-243ENST00000635973 CATSPERDQ86XM0 798 aa15.33■□□□□ 0.04
CLN3-243ENST00000635973 LINC01356Q8N9X3 169 aa15.33■□□□□ 0.04
CLN3-243ENST00000635973 OR8S1Q8NH09 359 aa15.33■□□□□ 0.04
CLN3-243ENST00000635973 FBLIM1Q8WUP2 373 aa15.33■□□□□ 0.04
CLN3-243ENST00000635973 CCL17Q92583 94 aa15.33■□□□□ 0.04
CLN3-243ENST00000635973 DVL3Q92997 716 aaPredicted RBP15.33■□□□□ 0.04
CLN3-243ENST00000635973 YIPF5Q969M3 257 aa15.33■□□□□ 0.04
CLN3-243ENST00000635973 PPP1R14AQ96A00 147 aa15.33■□□□□ 0.04
CLN3-243ENST00000635973 TMEM80Q96HE8 168 aa15.33■□□□□ 0.04
CLN3-243ENST00000635973 ANKRD60Q9BZ19 345 aa15.33■□□□□ 0.04
CLN3-243ENST00000635973 TREM2Q9NZC2 230 aa15.33■□□□□ 0.04
CLN3-243ENST00000635973 DIMT1Q9UNQ2 313 aaKnown RBP15.33■□□□□ 0.04
CLN3-243ENST00000635973 SLC22A13Q9Y226 551 aa15.33■□□□□ 0.04
CLN3-243ENST00000635973 A0A1B0GVI7 797 aa15.32■□□□□ 0.04
CLN3-243ENST00000635973 P2RY10O00398 339 aa15.32■□□□□ 0.04
CLN3-243ENST00000635973 PPIHO43447 177 aaKnown RBP15.32■□□□□ 0.04
CLN3-243ENST00000635973 MTRF1O75570 445 aaKnown RBP15.32■□□□□ 0.04
CLN3-243ENST00000635973 CRYBB2P43320 205 aa15.32■□□□□ 0.04
CLN3-243ENST00000635973 MAP2K3P46734 347 aa15.32■□□□□ 0.04
CLN3-243ENST00000635973 MZT1Q08AG7 82 aa15.32■□□□□ 0.04
CLN3-243ENST00000635973 RIN1Q13671 783 aa15.32■□□□□ 0.04
CLN3-243ENST00000635973 CR1LQ2VPA4 569 aa15.32■□□□□ 0.04
CLN3-243ENST00000635973 WDR38Q5JTN6 314 aa15.32■□□□□ 0.04
CLN3-243ENST00000635973 SYS1Q8N2H4 156 aa15.32■□□□□ 0.04
CLN3-243ENST00000635973 STX19Q8N4C7 294 aa15.32■□□□□ 0.04
CLN3-243ENST00000635973 SEMA6DQ8NFY4 1073 aa15.32■□□□□ 0.04
CLN3-243ENST00000635973 GGHQ92820 318 aa15.32■□□□□ 0.04
CLN3-243ENST00000635973 MEGF10Q96KG7 1140 aa15.32■□□□□ 0.04
CLN3-243ENST00000635973 CNBD2Q96M20 576 aa15.32■□□□□ 0.04
CLN3-243ENST00000635973 SOX7Q9BT81 388 aa15.32■□□□□ 0.04
CLN3-243ENST00000635973 ZNF275Q9NSD4 429 aaPredicted RBP15.32■□□□□ 0.04
CLN3-243ENST00000635973 CNOT2Q9NZN8 540 aaKnown RBP15.32■□□□□ 0.04
CLN3-243ENST00000635973 RAB26Q9ULW5 256 aa15.32■□□□□ 0.04
CLN3-243ENST00000635973 EXOSC1Q9Y3B2 195 aaKnown RBP15.32■□□□□ 0.04
CLN3-243ENST00000635973 IGHV3-64DA0A0J9YX35 117 aa15.31■□□□□ 0.04
CLN3-243ENST00000635973 CLDN25C9JDP6 229 aa15.31■□□□□ 0.04
CLN3-243ENST00000635973 GMDSO60547 372 aa15.31■□□□□ 0.04
CLN3-243ENST00000635973 UBCP0CG48 685 aaKnown RBP15.31■□□□□ 0.04
CLN3-243ENST00000635973 PIPP12273 146 aaPredicted RBP15.31■□□□□ 0.04
CLN3-243ENST00000635973 ATP6V1B1P15313 513 aa15.31■□□□□ 0.04
CLN3-243ENST00000635973 PCMT1P22061 227 aa15.31■□□□□ 0.04
CLN3-243ENST00000635973 ACKR3P25106 362 aa15.31■□□□□ 0.04
CLN3-243ENST00000635973 SRP14P37108 136 aaKnown RBP15.31■□□□□ 0.04
CLN3-243ENST00000635973 GPR6P46095 362 aaPredicted RBP15.31■□□□□ 0.04
CLN3-243ENST00000635973 CSNK2BP67870 215 aa15.31■□□□□ 0.04
CLN3-243ENST00000635973 ST3GAL4Q11206 333 aa15.31■□□□□ 0.04
CLN3-243ENST00000635973 SPRNQ5BIV9 151 aa15.31■□□□□ 0.04
CLN3-243ENST00000635973 C6orf141Q5SZD1 244 aa15.31■□□□□ 0.04
CLN3-243ENST00000635973 LAIR2Q6ISS4 152 aa15.31■□□□□ 0.04
CLN3-243ENST00000635973 TMPRSS11AQ6ZMR5 421 aa15.31■□□□□ 0.04
CLN3-243ENST00000635973 DOK3Q7L591 496 aa15.31■□□□□ 0.04
CLN3-243ENST00000635973 KLBQ86Z14 1044 aa15.31■□□□□ 0.04
CLN3-243ENST00000635973 KLHL36Q8N4N3 616 aa15.31■□□□□ 0.04
CLN3-243ENST00000635973 PIGCQ92535 297 aa15.31■□□□□ 0.04
CLN3-243ENST00000635973 ZNF184Q99676 751 aaPredicted RBP15.31■□□□□ 0.04
CLN3-243ENST00000635973 JAM3Q9BX67 310 aa15.31■□□□□ 0.04
CLN3-243ENST00000635973 Q9H521 79 aa15.31■□□□□ 0.04
CLN3-243ENST00000635973 ISG20L2Q9H9L3 353 aaKnown RBP15.31■□□□□ 0.04
CLN3-243ENST00000635973 PLEKHA1Q9HB21 404 aa15.31■□□□□ 0.04
CLN3-243ENST00000635973 PLCXD1Q9NUJ7 323 aa15.31■□□□□ 0.04
CLN3-243ENST00000635973 SCN3BQ9NY72 215 aa15.31■□□□□ 0.04
CLN3-243ENST00000635973 PPP1R3CQ9UQK1 317 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms