RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 CXADRP78310 365 aa9.32□□□□□ -0.92
CUX1-221ENST00000622516 HGFACQ04756 655 aa9.32□□□□□ -0.92
CUX1-221ENST00000622516 PLAC9Q5JTB6 97 aa9.32□□□□□ -0.92
CUX1-221ENST00000622516 C10orf128Q5T292 105 aa9.32□□□□□ -0.92
CUX1-221ENST00000622516 LIN54Q6MZP7 749 aa9.32□□□□□ -0.92
CUX1-221ENST00000622516 ZNF529Q6P280 563 aa9.32□□□□□ -0.92
CUX1-221ENST00000622516 SVIPQ8NHG7 77 aa9.32□□□□□ -0.92
CUX1-221ENST00000622516 MAFIPQ8WZ33 124 aa9.32□□□□□ -0.92
CUX1-221ENST00000622516 AQP3Q92482 292 aa9.32□□□□□ -0.92
CUX1-221ENST00000622516 ZNF799Q96GE5 643 aa9.32□□□□□ -0.92
CUX1-221ENST00000622516 STMND1H3BQB6 276 aa9.31□□□□□ -0.92
CUX1-221ENST00000622516 CFDP00746 253 aaPredicted RBP9.31□□□□□ -0.92
CUX1-221ENST00000622516 IGHEP01854 428 aa9.31□□□□□ -0.92
CUX1-221ENST00000622516 ZNF735P0CB33 412 aa9.31□□□□□ -0.92
CUX1-221ENST00000622516 GRK1Q15835 563 aa9.31□□□□□ -0.92
CUX1-221ENST00000622516 TEX261Q6UWH6 196 aa9.31□□□□□ -0.92
CUX1-221ENST00000622516 DOK3Q7L591 496 aa9.31□□□□□ -0.92
CUX1-221ENST00000622516 AAED1Q7RTV5 226 aa9.31□□□□□ -0.92
CUX1-221ENST00000622516 C20orf196Q8IYI0 205 aa9.31□□□□□ -0.92
CUX1-221ENST00000622516 OR13C8Q8NGS7 320 aa9.31□□□□□ -0.92
CUX1-221ENST00000622516 NTNG2Q96CW9 530 aa9.31□□□□□ -0.92
CUX1-221ENST00000622516 C1orf147Q96MC9 270 aaPredicted RBP9.31□□□□□ -0.92
CUX1-221ENST00000622516 GPR137Q96N19 417 aa9.31□□□□□ -0.92
CUX1-221ENST00000622516 SPRY4Q9C004 299 aa9.31□□□□□ -0.92
CUX1-221ENST00000622516 LPAR5Q9H1C0 372 aa9.31□□□□□ -0.92
CUX1-221ENST00000622516 HEXA-AS1Q9H8Q6 139 aa9.31□□□□□ -0.92
CUX1-221ENST00000622516 NPTNQ9Y639 398 aa9.31□□□□□ -0.92
CUX1-221ENST00000622516 U3KQ87 197 aa9.31□□□□□ -0.92
CUX1-221ENST00000622516 TMEM82A0PJX8 343 aa9.31□□□□□ -0.92
CUX1-221ENST00000622516 UBE2QL1A1L167 161 aa9.31□□□□□ -0.92
CUX1-221ENST00000622516 ZNF716A6NP11 495 aa9.31□□□□□ -0.92
CUX1-221ENST00000622516 POM121CA8CG34 1229 aa9.31□□□□□ -0.92
CUX1-221ENST00000622516 NEURL1O76050 574 aa9.31□□□□□ -0.92
CUX1-221ENST00000622516 BPNT1O95861 308 aa9.31□□□□□ -0.92
CUX1-221ENST00000622516 SERPINA2P20848 420 aa9.31□□□□□ -0.92
CUX1-221ENST00000622516 ZNF84P51523 738 aa9.31□□□□□ -0.92
CUX1-221ENST00000622516 FOXO1Q12778 655 aa9.31□□□□□ -0.92
CUX1-221ENST00000622516 TGIF1Q15583 401 aa9.31□□□□□ -0.92
CUX1-221ENST00000622516 KISS1Q15726 138 aa9.31□□□□□ -0.92
CUX1-221ENST00000622516 CLVS2Q5SYC1 327 aa9.31□□□□□ -0.92
CUX1-221ENST00000622516 SHEQ5VZ18 495 aa9.31□□□□□ -0.92
CUX1-221ENST00000622516 CDH24Q86UP0 819 aa9.31□□□□□ -0.92
CUX1-221ENST00000622516 TMEM229BQ8NBD8 167 aa9.31□□□□□ -0.92
CUX1-221ENST00000622516 ZNF680Q8NEM1 530 aa9.31□□□□□ -0.92
CUX1-221ENST00000622516 OR10R2Q8NGX6 335 aa9.31□□□□□ -0.92
CUX1-221ENST00000622516 MOB1AQ9H8S9 216 aa9.31□□□□□ -0.92
CUX1-221ENST00000622516 ZNF230Q9UIE0 474 aaPredicted RBP9.31□□□□□ -0.92
CUX1-221ENST00000622516 GJE1A6NN92 205 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 TMEM14DPA8MWL7 114 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 ARPC5O15511 151 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 SSX5O60225 188 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 CDC14BO60729 498 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 RAD51DO75771 328 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 MT-CO3P00414 261 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 ITGB2P05107 769 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 OR4E1P0C645 316 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 HOXB1P14653 301 aaPredicted RBP9.3□□□□□ -0.92
CUX1-221ENST00000622516 ZNF32P17041 273 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 TMEM50BP56557 158 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 C3AR1Q16581 482 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 CEACAM16Q2WEN9 425 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 ATPAF1Q5TC12 328 aaPredicted RBP9.3□□□□□ -0.92
CUX1-221ENST00000622516 TMEM164Q5U3C3 297 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 GLRX5Q86SX6 157 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 BATF2Q8N1L9 274 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 ARMC10Q8N2F6 343 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 ELMOD3Q96FG2 381 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 ARHGAP5-AS1Q96IT6 56 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 CACNA1GO43497 2377 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 RP1L1Q8IWN7 2480 aaPredicted RBP9.3□□□□□ -0.92
CUX1-221ENST00000622516 TNFSF15O95150 251 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 IL5P05113 134 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 ZNF883P0CG24 379 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 FCGR2AP12318 317 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 CPN1P15169 458 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 CXCL2P19875 107 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 ACKR3P25106 362 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 AVPR2P30518 371 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 AP2S1P53680 142 aaPredicted RBP9.3□□□□□ -0.92
CUX1-221ENST00000622516 SPEM2Q0P670 501 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 POU4F3Q15319 338 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 RNASE10Q5GAN6 216 aaKnown RBP9.3□□□□□ -0.92
CUX1-221ENST00000622516 ZBTB37Q5TC79 503 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 HES3Q5TGS1 186 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 H3F3CQ6NXT2 135 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 RHOUQ7L0Q8 258 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 OR2AK2Q8NG84 335 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 OR2V1Q8NHB1 315 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 SGK3Q96BR1 496 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 UTP23Q9BRU9 249 aaKnown RBP9.3□□□□□ -0.92
CUX1-221ENST00000622516 TMEM59Q9BXS4 323 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 IFT46Q9NQC8 304 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 GPR173Q9NS66 373 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 PFDN2Q9UHV9 154 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 VSIG4Q9Y279 399 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 SNRPGP15A8MWD9 76 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 CCSO14618 274 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 SGCEO43556 437 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 SLC22A5O76082 557 aa9.3□□□□□ -0.92
CUX1-221ENST00000622516 RGS11O94810 467 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 123.7 ms