RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 LCN6P62502 163 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 SLC22A6Q4U2R8 563 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 KHDC3LQ587J8 217 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 ZNF776Q68DI1 518 aaPredicted RBP9.62□□□□□ -0.87
UPF3A-212ENST00000619079 WBP2NLQ6ICG8 309 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 NUP54Q7Z3B4 507 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 CSNK1A1LQ8N752 337 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 OR52R1Q8NGF1 315 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 OR4D6Q8NGJ1 314 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 OR51A2Q8NGJ7 313 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 PRRX2Q99811 253 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 FBRSQ9HAH7 460 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 FBLN5Q9UBX5 448 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 ZDHHC8Q9ULC8 765 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 ANAPC10Q9UM13 185 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 GOLGA4Q13439 2230 aaKnown RBP9.62□□□□□ -0.87
UPF3A-212ENST00000619079 WIPF3A6NGB9 483 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 ZNF724A8MTY0 619 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 XKRYO14609 159 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 HIST1H2BKO60814 126 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 DEDDO75618 318 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 OR6A2O95222 327 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 HIST1H2BJP06899 126 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 GSTP1P09211 210 aaKnown RBP9.62□□□□□ -0.87
UPF3A-212ENST00000619079 ZNF708P17019 499 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 HIST1H2BOP23527 126 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 HIST1H2BBP33778 126 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 NPY4RP50391 375 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 HIST1H2BDP58876 126 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 HIST1H2BCP62807 126 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 SUPT4H1P63272 117 aaKnown RBP9.62□□□□□ -0.87
UPF3A-212ENST00000619079 PSG6Q00889 435 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 RPL18Q07020 188 aaKnown RBP9.62□□□□□ -0.87
UPF3A-212ENST00000619079 HIST2H2BEQ16778 126 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.62□□□□□ -0.87
UPF3A-212ENST00000619079 SLC22A25Q6T423 547 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 TTLL10Q6ZVT0 673 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 LYPD6Q86Y78 171 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 HIST1H2BHQ93079 126 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 MRGPRX1Q96LB2 322 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 C5orf34Q96MH7 638 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 GNRHR2Q96P88 292 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 HIST1H2BNQ99877 126 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 HIST1H2BMQ99879 126 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 CAPN10Q9HC96 672 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 C1orf123Q9NWV4 160 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 MMP24Q9Y5R2 645 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 HEBP2Q9Y5Z4 205 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 PUS1Q9Y606 427 aaKnown RBP eCLIP9.62□□□□□ -0.87
UPF3A-212ENST00000619079 EML5Q05BV3 1969 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 SERINC4A6NH21 518 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 ZNF217O75362 1048 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 PRH1P02810 166 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 SFTPBP07988 381 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 SPARCP09486 303 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 GABRG2P18507 467 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 HSD11B1P28845 292 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 MFGE8Q08431 387 aaPredicted RBP9.61□□□□□ -0.87
UPF3A-212ENST00000619079 FAM53BQ14153 422 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 CST6Q15828 149 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 USF2Q15853 346 aaPredicted RBP9.61□□□□□ -0.87
UPF3A-212ENST00000619079 FAM189A2Q15884 450 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 SLC35D2Q76EJ3 337 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 SLC22A24Q8N4F4 322 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 BEND2Q8NDZ0 799 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 OR6X1Q8NH79 312 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 NTNG2Q96CW9 530 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 CMBLQ96DG6 245 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 TM4SF19Q96DZ7 209 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 MISP3Q96FF7 219 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 MOGAT1Q96PD6 335 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 LPAR4Q99677 370 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 GPR61Q9BZJ8 451 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 OR11A1Q9GZK7 315 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 KIR3DX1Q9H7L2 352 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 PISDQ9UG56 409 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 LOC107986453A0A1B0GWG9 222 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 SMCO3A2RU48 225 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 IGKV1D-16P01601 117 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 CT62P0C5K7 136 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 GNB3P16520 340 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 FGF7P21781 194 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 PPM1FP49593 454 aaPredicted RBP9.61□□□□□ -0.87
UPF3A-212ENST00000619079 NHLH2Q02577 135 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 IAH1Q2TAA2 248 aaPredicted RBP9.61□□□□□ -0.87
UPF3A-212ENST00000619079 HIKESHIQ53FT3 197 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 AKR1C8PQ5T2L2 129 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 TGIF2LXQ8IUE1 241 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 ZNF101Q8IZC7 436 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 CCDC54Q8NEL0 328 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 OR13C9Q8NGT0 318 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 OR5H2Q8NGV7 314 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 MFSD8Q8NHS3 518 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 RHBDD1Q8TEB9 315 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 METTL21AQ8WXB1 218 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 SLC22A18Q96BI1 424 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 GINS3Q9BRX5 216 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 LRFN3Q9BTN0 628 aa9.61□□□□□ -0.87
UPF3A-212ENST00000619079 MRPL37Q9BZE1 423 aaKnown RBP9.61□□□□□ -0.87
UPF3A-212ENST00000619079 NELFAQ9H3P2 528 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms