RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 Q6ZSR3 168 aa12.62□□□□□ -0.39
VRK3-217ENST00000599538 TRAPPC6BQ86SZ2 158 aa12.62□□□□□ -0.39
VRK3-217ENST00000599538 TMEM229BQ8NBD8 167 aa12.62□□□□□ -0.39
VRK3-217ENST00000599538 OR10K1Q8NGX5 313 aa12.62□□□□□ -0.39
VRK3-217ENST00000599538 OR10R2Q8NGX6 335 aa12.62□□□□□ -0.39
VRK3-217ENST00000599538 GRPEL2Q8TAA5 225 aa12.62□□□□□ -0.39
VRK3-217ENST00000599538 TMEM45BQ96B21 275 aa12.62□□□□□ -0.39
VRK3-217ENST00000599538 SLCO5A1Q9H2Y9 848 aa12.62□□□□□ -0.39
VRK3-217ENST00000599538 ZNF552Q9H707 407 aaPredicted RBP12.62□□□□□ -0.39
VRK3-217ENST00000599538 DLL4Q9NR61 685 aa12.62□□□□□ -0.39
VRK3-217ENST00000599538 ZNF69Q9UC07 566 aa12.62□□□□□ -0.39
VRK3-217ENST00000599538 KLF13Q9Y2Y9 288 aaPredicted RBP12.62□□□□□ -0.39
VRK3-217ENST00000599538 ZFHX2Q9C0A1 2572 aaPredicted RBP12.62□□□□□ -0.39
VRK3-217ENST00000599538 A0A096LPE4 126 aa12.62□□□□□ -0.39
VRK3-217ENST00000599538 A0A1W2PPZ6 126 aa12.62□□□□□ -0.39
VRK3-217ENST00000599538 G3V3Q6 166 aa12.62□□□□□ -0.39
VRK3-217ENST00000599538 SSX5O60225 188 aa12.62□□□□□ -0.39
VRK3-217ENST00000599538 LCATP04180 440 aa12.62□□□□□ -0.39
VRK3-217ENST00000599538 MMP7P09237 267 aaPredicted RBP12.62□□□□□ -0.39
VRK3-217ENST00000599538 THBS4P35443 961 aa12.62□□□□□ -0.39
VRK3-217ENST00000599538 CAPZA1P52907 286 aa12.62□□□□□ -0.39
VRK3-217ENST00000599538 TMEM50BP56557 158 aa12.62□□□□□ -0.39
VRK3-217ENST00000599538 SSBP1Q04837 148 aaKnown RBP12.62□□□□□ -0.39
VRK3-217ENST00000599538 SCRN3Q0VDG4 424 aa12.62□□□□□ -0.39
VRK3-217ENST00000599538 TCF15Q12870 199 aa12.62□□□□□ -0.39
VRK3-217ENST00000599538 RAB12Q6IQ22 244 aa12.62□□□□□ -0.39
VRK3-217ENST00000599538 DRAM2Q6UX65 266 aa12.62□□□□□ -0.39
VRK3-217ENST00000599538 CPEB3Q8NE35 698 aaKnown RBP12.62□□□□□ -0.39
VRK3-217ENST00000599538 DEDD2Q8WXF8 326 aa12.62□□□□□ -0.39
VRK3-217ENST00000599538 FAM117AQ9C073 453 aa12.62□□□□□ -0.39
VRK3-217ENST00000599538 CHST5Q9GZS9 411 aa12.62□□□□□ -0.39
VRK3-217ENST00000599538 HSPB11Q9Y547 144 aa12.62□□□□□ -0.39
VRK3-217ENST00000599538 LAMA5O15230 3695 aa12.61□□□□□ -0.39
VRK3-217ENST00000599538 CYB5AP00167 134 aa12.61□□□□□ -0.39
VRK3-217ENST00000599538 AMY2AP04746 511 aa12.61□□□□□ -0.39
VRK3-217ENST00000599538 MELTFP08582 738 aa12.61□□□□□ -0.39
VRK3-217ENST00000599538 BCL2A1Q16548 175 aa12.61□□□□□ -0.39
VRK3-217ENST00000599538 NKPD1Q17RQ9 610 aa12.61□□□□□ -0.39
VRK3-217ENST00000599538 C2orf68Q2NKX9 166 aa12.61□□□□□ -0.39
VRK3-217ENST00000599538 KRTAP27-1Q3LI81 207 aa12.61□□□□□ -0.39
VRK3-217ENST00000599538 ZNF626Q68DY1 528 aa12.61□□□□□ -0.39
VRK3-217ENST00000599538 CHMP1BQ7LBR1 199 aa12.61□□□□□ -0.39
VRK3-217ENST00000599538 NLRC3Q7RTR2 1065 aa12.61□□□□□ -0.39
VRK3-217ENST00000599538 CD163Q86VB7 1156 aa12.61□□□□□ -0.39
VRK3-217ENST00000599538 C9orf62Q8N4C0 152 aa12.61□□□□□ -0.39
VRK3-217ENST00000599538 ZFP62Q8NB50 900 aaPredicted RBP12.61□□□□□ -0.39
VRK3-217ENST00000599538 REEP6Q96HR9 211 aa12.61□□□□□ -0.39
VRK3-217ENST00000599538 SLC6A7Q99884 636 aa12.61□□□□□ -0.39
VRK3-217ENST00000599538 OR10A2Q9H208 303 aa12.61□□□□□ -0.39
VRK3-217ENST00000599538 GPR173Q9NS66 373 aa12.61□□□□□ -0.39
VRK3-217ENST00000599538 MGAT4AQ9UM21 535 aa12.61□□□□□ -0.39
VRK3-217ENST00000599538 TIMM10BQ9Y5J6 103 aa12.61□□□□□ -0.39
VRK3-217ENST00000599538 ZNF503-AS2A6NEH8 195 aa12.61□□□□□ -0.39
VRK3-217ENST00000599538 ZNF736B4DX44 427 aaPredicted RBP12.61□□□□□ -0.39
VRK3-217ENST00000599538 KLRC4-KLRK1H3BQV0 150 aa12.61□□□□□ -0.39
VRK3-217ENST00000599538 CRTAPO75718 401 aaPredicted RBP12.61□□□□□ -0.39
VRK3-217ENST00000599538 RAD51DO75771 328 aa12.61□□□□□ -0.39
VRK3-217ENST00000599538 WISP2O76076 250 aa12.61□□□□□ -0.39
VRK3-217ENST00000599538 TOXO94900 526 aa12.61□□□□□ -0.39
VRK3-217ENST00000599538 CD74P04233 296 aa12.61□□□□□ -0.39
VRK3-217ENST00000599538 FCGR2AP12318 317 aa12.61□□□□□ -0.39
VRK3-217ENST00000599538 PTGFRP43088 359 aa12.61□□□□□ -0.39
VRK3-217ENST00000599538 ARG2P78540 354 aa12.61□□□□□ -0.39
VRK3-217ENST00000599538 ARF1P84077 181 aaKnown RBP12.61□□□□□ -0.39
VRK3-217ENST00000599538 PMP22Q01453 160 aa12.61□□□□□ -0.39
VRK3-217ENST00000599538 MEIOBQ8N635 442 aa12.61□□□□□ -0.39
VRK3-217ENST00000599538 OR52H1Q8NGJ2 320 aa12.61□□□□□ -0.39
VRK3-217ENST00000599538 HYLS1Q96M11 299 aa12.61□□□□□ -0.39
VRK3-217ENST00000599538 TRAF4Q9BUZ4 470 aaPredicted RBP12.61□□□□□ -0.39
VRK3-217ENST00000599538 TMEM59Q9BXS4 323 aa12.61□□□□□ -0.39
VRK3-217ENST00000599538 CHIAQ9BZP6 476 aa12.61□□□□□ -0.39
VRK3-217ENST00000599538 ZNF436Q9C0F3 470 aaPredicted RBP12.61□□□□□ -0.39
VRK3-217ENST00000599538 B3GNT2Q9NY97 397 aa12.61□□□□□ -0.39
VRK3-217ENST00000599538 SYNGR4O95473 234 aa12.6□□□□□ -0.39
VRK3-217ENST00000599538 APOC1P02654 83 aa12.6□□□□□ -0.39
VRK3-217ENST00000599538 IL5P05113 134 aa12.6□□□□□ -0.39
VRK3-217ENST00000599538 PABPC1L2AQ5JQF8 200 aa12.6□□□□□ -0.39
VRK3-217ENST00000599538 IDO2Q6ZQW0 420 aa12.6□□□□□ -0.39
VRK3-217ENST00000599538 OR2W3Q7Z3T1 314 aa12.6□□□□□ -0.39
VRK3-217ENST00000599538 NUFIP2Q7Z417 695 aaKnown RBP12.6□□□□□ -0.39
VRK3-217ENST00000599538 ZNF584Q8IVC4 421 aa12.6□□□□□ -0.39
VRK3-217ENST00000599538 CDH26Q8IXH8 852 aa12.6□□□□□ -0.39
VRK3-217ENST00000599538 KCNG3Q8TAE7 436 aa12.6□□□□□ -0.39
VRK3-217ENST00000599538 PRRG4Q9BZD6 226 aa12.6□□□□□ -0.39
VRK3-217ENST00000599538 EMC3Q9P0I2 261 aa12.6□□□□□ -0.39
VRK3-217ENST00000599538 MGAT4CQ9UBM8 478 aa12.6□□□□□ -0.39
VRK3-217ENST00000599538 ING4Q9UNL4 249 aa12.6□□□□□ -0.39
VRK3-217ENST00000599538 NPTNQ9Y639 398 aa12.6□□□□□ -0.39
VRK3-217ENST00000599538 ZNF587BE7ETH6 402 aa12.59□□□□□ -0.39
VRK3-217ENST00000599538 CREBL2O60519 120 aaPredicted RBP12.59□□□□□ -0.39
VRK3-217ENST00000599538 MTRF1O75570 445 aaKnown RBP12.59□□□□□ -0.39
VRK3-217ENST00000599538 NAT2P11245 290 aa12.59□□□□□ -0.39
VRK3-217ENST00000599538 CD46P15529 392 aa12.59□□□□□ -0.39
VRK3-217ENST00000599538 HOXD11P31277 338 aaPredicted RBP12.59□□□□□ -0.39
VRK3-217ENST00000599538 SLC10A1Q14973 349 aa12.59□□□□□ -0.39
VRK3-217ENST00000599538 SCGB2B2Q4G0G5 96 aa12.59□□□□□ -0.39
VRK3-217ENST00000599538 ZNF766Q5HY98 468 aa12.59□□□□□ -0.39
VRK3-217ENST00000599538 TMEM53Q6P2H8 277 aa12.59□□□□□ -0.39
VRK3-217ENST00000599538 C17orf107Q6ZR85 190 aa12.59□□□□□ -0.39
VRK3-217ENST00000599538 CDH24Q86UP0 819 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms