RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 OR12D2P58182 307 aa11.74□□□□□ -0.53
SHKBP1-218ENST00000598907 GRB2P62993 217 aaKnown RBP11.74□□□□□ -0.53
SHKBP1-218ENST00000598907 DOC2BQ14184 412 aa11.74□□□□□ -0.53
SHKBP1-218ENST00000598907 RAB39AQ14964 217 aa11.74□□□□□ -0.53
SHKBP1-218ENST00000598907 TBCEQ15813 527 aaPredicted RBP11.74□□□□□ -0.53
SHKBP1-218ENST00000598907 OR2G6Q5TZ20 316 aa11.74□□□□□ -0.53
SHKBP1-218ENST00000598907 KRT77Q7Z794 578 aa11.74□□□□□ -0.53
SHKBP1-218ENST00000598907 ALDH16A1Q8IZ83 802 aa11.74□□□□□ -0.53
SHKBP1-218ENST00000598907 KLHL36Q8N4N3 616 aa11.74□□□□□ -0.53
SHKBP1-218ENST00000598907 SNX33Q8WV41 574 aa11.74□□□□□ -0.53
SHKBP1-218ENST00000598907 RAB39BQ96DA2 213 aa11.74□□□□□ -0.53
SHKBP1-218ENST00000598907 MRPL48Q96GC5 212 aaKnown RBP11.74□□□□□ -0.53
SHKBP1-218ENST00000598907 POM121L2Q96KW2 1035 aa11.74□□□□□ -0.53
SHKBP1-218ENST00000598907 SYT3Q9BQG1 590 aa11.74□□□□□ -0.53
SHKBP1-218ENST00000598907 MROQ9BYG7 248 aa11.74□□□□□ -0.53
SHKBP1-218ENST00000598907 TTTY10Q9BZA0 68 aa11.74□□□□□ -0.53
SHKBP1-218ENST00000598907 MRPL37Q9BZE1 423 aaKnown RBP11.74□□□□□ -0.53
SHKBP1-218ENST00000598907 CCDC90BQ9GZT6 254 aa11.74□□□□□ -0.53
SHKBP1-218ENST00000598907 NIPAL2Q9H841 368 aa11.74□□□□□ -0.53
SHKBP1-218ENST00000598907 ELOVL3Q9HB03 270 aa11.74□□□□□ -0.53
SHKBP1-218ENST00000598907 ACOT13Q9NPJ3 140 aa11.74□□□□□ -0.53
SHKBP1-218ENST00000598907 CENPMQ9NSP4 180 aa11.74□□□□□ -0.53
SHKBP1-218ENST00000598907 CHCHD3Q9NX63 227 aaKnown RBP11.74□□□□□ -0.53
SHKBP1-218ENST00000598907 ERGIC3Q9Y282 383 aa11.74□□□□□ -0.53
SHKBP1-218ENST00000598907 LRP12Q9Y561 859 aa11.74□□□□□ -0.53
SHKBP1-218ENST00000598907 LOC100509620A0A075B734 347 aa11.73□□□□□ -0.53
SHKBP1-218ENST00000598907 IQCMA0A1B0GVH7 501 aa11.73□□□□□ -0.53
SHKBP1-218ENST00000598907 PSMD9O00233 223 aa11.73□□□□□ -0.53
SHKBP1-218ENST00000598907 CDC14BO60729 498 aa11.73□□□□□ -0.53
SHKBP1-218ENST00000598907 NCR1O76036 304 aa11.73□□□□□ -0.53
SHKBP1-218ENST00000598907 PTHP01270 115 aa11.73□□□□□ -0.53
SHKBP1-218ENST00000598907 KRT8P05787 483 aa11.73□□□□□ -0.53
SHKBP1-218ENST00000598907 RPSAP08865 295 aaKnown RBP11.73□□□□□ -0.53
SHKBP1-218ENST00000598907 H2BFMP0C1H6 154 aa11.73□□□□□ -0.53
SHKBP1-218ENST00000598907 STOMP27105 288 aa11.73□□□□□ -0.53
SHKBP1-218ENST00000598907 MAP2K4P45985 399 aa11.73□□□□□ -0.53
SHKBP1-218ENST00000598907 WNT4P56705 351 aa11.73□□□□□ -0.53
SHKBP1-218ENST00000598907 PLP2Q04941 152 aa11.73□□□□□ -0.53
SHKBP1-218ENST00000598907 ACSM1Q08AH1 577 aa11.73□□□□□ -0.53
SHKBP1-218ENST00000598907 SLC9A3R2Q15599 337 aa11.73□□□□□ -0.53
SHKBP1-218ENST00000598907 TP53I3Q53FA7 332 aa11.73□□□□□ -0.53
SHKBP1-218ENST00000598907 XAF1Q6GPH4 301 aa11.73□□□□□ -0.53
SHKBP1-218ENST00000598907 FDX2Q6P4F2 183 aa11.73□□□□□ -0.53
SHKBP1-218ENST00000598907 TMPRSS11AQ6ZMR5 421 aa11.73□□□□□ -0.53
SHKBP1-218ENST00000598907 SVOPQ8N4V2 548 aa11.73□□□□□ -0.53
SHKBP1-218ENST00000598907 FAM110DQ8TAY7 271 aaPredicted RBP11.73□□□□□ -0.53
SHKBP1-218ENST00000598907 SPRYD4Q8WW59 207 aaPredicted RBP11.73□□□□□ -0.53
SHKBP1-218ENST00000598907 PELI1Q96FA3 418 aa11.73□□□□□ -0.53
SHKBP1-218ENST00000598907 MS4A3Q96HJ5 214 aa11.73□□□□□ -0.53
SHKBP1-218ENST00000598907 C4orf36Q96KX1 117 aa11.73□□□□□ -0.53
SHKBP1-218ENST00000598907 KCNJ15Q99712 375 aa11.73□□□□□ -0.53
SHKBP1-218ENST00000598907 MND1Q9BWT6 205 aa11.73□□□□□ -0.53
SHKBP1-218ENST00000598907 IKZF2Q9UKS7 526 aa11.73□□□□□ -0.53
SHKBP1-218ENST00000598907 SNX5Q9Y5X3 404 aa11.73□□□□□ -0.53
SHKBP1-218ENST00000598907 IGHV2OR16-5A0A0B4J2B6 119 aa11.72□□□□□ -0.53
SHKBP1-218ENST00000598907 C3orf80F5H4A9 247 aa11.72□□□□□ -0.53
SHKBP1-218ENST00000598907 J3QLW9 94 aa11.72□□□□□ -0.53
SHKBP1-218ENST00000598907 MYL12BO14950 172 aa11.72□□□□□ -0.53
SHKBP1-218ENST00000598907 ICMTO60725 284 aa11.72□□□□□ -0.53
SHKBP1-218ENST00000598907 LALBAP00709 142 aa11.72□□□□□ -0.53
SHKBP1-218ENST00000598907 MT-ND5P03915 603 aa11.72□□□□□ -0.53
SHKBP1-218ENST00000598907 DBHP09172 617 aa11.72□□□□□ -0.53
SHKBP1-218ENST00000598907 ACSM4P0C7M7 580 aa11.72□□□□□ -0.53
SHKBP1-218ENST00000598907 ZNF19P17023 458 aa11.72□□□□□ -0.53
SHKBP1-218ENST00000598907 HTR5AP47898 357 aa11.72□□□□□ -0.53
SHKBP1-218ENST00000598907 MMP16P51512 607 aa11.72□□□□□ -0.53
SHKBP1-218ENST00000598907 RIDAP52758 137 aaKnown RBP11.72□□□□□ -0.53
SHKBP1-218ENST00000598907 TMEM33P57088 247 aa11.72□□□□□ -0.53
SHKBP1-218ENST00000598907 LCN2P80188 198 aa11.72□□□□□ -0.53
SHKBP1-218ENST00000598907 MSMPQ1L6U9 139 aa11.72□□□□□ -0.53
SHKBP1-218ENST00000598907 UBE2UQ5VVX9 321 aa11.72□□□□□ -0.53
SHKBP1-218ENST00000598907 PRSS45Q7RTY3 260 aa11.72□□□□□ -0.53
SHKBP1-218ENST00000598907 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.72□□□□□ -0.53
SHKBP1-218ENST00000598907 YIPF7Q8N8F6 280 aa11.72□□□□□ -0.53
SHKBP1-218ENST00000598907 RPS4Y2Q8TD47 263 aa11.72□□□□□ -0.53
SHKBP1-218ENST00000598907 HAVCR2Q8TDQ0 301 aa11.72□□□□□ -0.53
SHKBP1-218ENST00000598907 SLC7A6Q92536 515 aa11.72□□□□□ -0.53
SHKBP1-218ENST00000598907 OR5M11Q96RB7 305 aa11.72□□□□□ -0.53
SHKBP1-218ENST00000598907 DCLRE1CQ96SD1 692 aaKnown RBP11.72□□□□□ -0.53
SHKBP1-218ENST00000598907 CITED1Q99966 193 aa11.72□□□□□ -0.53
SHKBP1-218ENST00000598907 ISYNA1Q9NPH2 558 aa11.72□□□□□ -0.53
SHKBP1-218ENST00000598907 ACOXLQ9NUZ1 547 aa11.72□□□□□ -0.53
SHKBP1-218ENST00000598907 BABAM2Q9NXR7 383 aa11.72□□□□□ -0.53
SHKBP1-218ENST00000598907 GNG8Q9UK08 70 aa11.72□□□□□ -0.53
SHKBP1-218ENST00000598907 CMAHPQ9Y471 501 aa11.72□□□□□ -0.53
SHKBP1-218ENST00000598907 EPPK1P58107 5090 aaKnown RBP11.72□□□□□ -0.53
SHKBP1-218ENST00000598907 E9PI62 339 aa11.71□□□□□ -0.53
SHKBP1-218ENST00000598907 G3V4G9 280 aa11.71□□□□□ -0.53
SHKBP1-218ENST00000598907 RP2O75695 350 aa11.71□□□□□ -0.53
SHKBP1-218ENST00000598907 ZNF35P13682 527 aa11.71□□□□□ -0.53
SHKBP1-218ENST00000598907 JUNBP17275 347 aaPredicted RBP11.71□□□□□ -0.53
SHKBP1-218ENST00000598907 TGM4P49221 684 aa11.71□□□□□ -0.53
SHKBP1-218ENST00000598907 BDH1Q02338 343 aa11.71□□□□□ -0.53
SHKBP1-218ENST00000598907 MRPL28Q13084 256 aaKnown RBP11.71□□□□□ -0.53
SHKBP1-218ENST00000598907 SPHARQ15513 63 aa11.71□□□□□ -0.53
SHKBP1-218ENST00000598907 TAF13Q15543 124 aa11.71□□□□□ -0.53
SHKBP1-218ENST00000598907 ASPHD2Q6ICH7 369 aa11.71□□□□□ -0.53
SHKBP1-218ENST00000598907 DRAM2Q6UX65 266 aa11.71□□□□□ -0.53
SHKBP1-218ENST00000598907 COLCA1Q6ZS62 124 aa11.71□□□□□ -0.53
SHKBP1-218ENST00000598907 KCTD8Q6ZWB6 473 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms