RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 ALX3O95076 343 aa13.28□□□□□ -0.28
UPF1-206ENST00000598471 CD3EP07766 207 aa13.28□□□□□ -0.28
UPF1-206ENST00000598471 RNF224P0DH78 156 aa13.28□□□□□ -0.28
UPF1-206ENST00000598471 PRSS12P56730 875 aa13.28□□□□□ -0.28
UPF1-206ENST00000598471 ERVS71-1P61550 626 aa13.28□□□□□ -0.28
UPF1-206ENST00000598471 NKX6-1P78426 367 aaPredicted RBP13.28□□□□□ -0.28
UPF1-206ENST00000598471 SPOCK1Q08629 439 aa13.28□□□□□ -0.28
UPF1-206ENST00000598471 NCMAPQ5T1S8 102 aa13.28□□□□□ -0.28
UPF1-206ENST00000598471 MBNL2Q5VZF2 373 aaKnown RBP13.28□□□□□ -0.28
UPF1-206ENST00000598471 SFXN4Q6P4A7 337 aa13.28□□□□□ -0.28
UPF1-206ENST00000598471 LRRTM1Q86UE6 522 aa13.28□□□□□ -0.28
UPF1-206ENST00000598471 KLF14Q8TD94 323 aaPredicted RBP13.28□□□□□ -0.28
UPF1-206ENST00000598471 SPSB1Q96BD6 273 aa13.28□□□□□ -0.28
UPF1-206ENST00000598471 FOXRED1Q96CU9 486 aaPredicted RBP13.28□□□□□ -0.28
UPF1-206ENST00000598471 HAVCR1Q96D42 359 aa13.28□□□□□ -0.28
UPF1-206ENST00000598471 PLPPR2Q96GM1 343 aa13.28□□□□□ -0.28
UPF1-206ENST00000598471 PAPOLGQ9BWT3 736 aaKnown RBP13.28□□□□□ -0.28
UPF1-206ENST00000598471 ABCB9Q9NP78 766 aa13.28□□□□□ -0.28
UPF1-206ENST00000598471 POU2F3Q9UKI9 436 aa13.28□□□□□ -0.28
UPF1-206ENST00000598471 DIDO1Q9BTC0 2240 aaKnown RBP13.28□□□□□ -0.28
UPF1-206ENST00000598471 FASNP49327 2511 aaKnown RBP13.27□□□□□ -0.29
UPF1-206ENST00000598471 SMIM30A4D0T7 59 aa13.27□□□□□ -0.29
UPF1-206ENST00000598471 NCR1O76036 304 aa13.27□□□□□ -0.29
UPF1-206ENST00000598471 CST4P01036 141 aa13.27□□□□□ -0.29
UPF1-206ENST00000598471 NRASP01111 189 aa13.27□□□□□ -0.29
UPF1-206ENST00000598471 HCKP08631 526 aa13.27□□□□□ -0.29
UPF1-206ENST00000598471 ATF1P18846 271 aa13.27□□□□□ -0.29
UPF1-206ENST00000598471 PRKACBP22694 351 aa13.27□□□□□ -0.29
UPF1-206ENST00000598471 KIR2DL3P43628 341 aa13.27□□□□□ -0.29
UPF1-206ENST00000598471 SELENOVP59797 346 aa13.27□□□□□ -0.29
UPF1-206ENST00000598471 TNK1Q13470 666 aa13.27□□□□□ -0.29
UPF1-206ENST00000598471 SNTB1Q13884 538 aaKnown RBP13.27□□□□□ -0.29
UPF1-206ENST00000598471 ZNF404Q494X3 552 aa13.27□□□□□ -0.29
UPF1-206ENST00000598471 DDI2Q5TDH0 399 aa13.27□□□□□ -0.29
UPF1-206ENST00000598471 TMEM42Q69YG0 159 aa13.27□□□□□ -0.29
UPF1-206ENST00000598471 ASPHD2Q6ICH7 369 aa13.27□□□□□ -0.29
UPF1-206ENST00000598471 OR2T2Q6IF00 324 aa13.27□□□□□ -0.29
UPF1-206ENST00000598471 ZNF529Q6P280 563 aa13.27□□□□□ -0.29
UPF1-206ENST00000598471 CDH26Q8IXH8 852 aa13.27□□□□□ -0.29
UPF1-206ENST00000598471 MCFD2Q8NI22 146 aa13.27□□□□□ -0.29
UPF1-206ENST00000598471 SYNPRQ8TBG9 265 aa13.27□□□□□ -0.29
UPF1-206ENST00000598471 PIGCQ92535 297 aa13.27□□□□□ -0.29
UPF1-206ENST00000598471 KCTD12Q96CX2 325 aaKnown RBP13.27□□□□□ -0.29
UPF1-206ENST00000598471 HIST1H2AAQ96QV6 131 aa13.27□□□□□ -0.29
UPF1-206ENST00000598471 GPR173Q9NS66 373 aa13.27□□□□□ -0.29
UPF1-206ENST00000598471 MRPL15Q9P015 296 aaKnown RBP13.27□□□□□ -0.29
UPF1-206ENST00000598471 SLC7A11Q9UPY5 501 aa13.27□□□□□ -0.29
UPF1-206ENST00000598471 MPC1Q9Y5U8 109 aa13.27□□□□□ -0.29
UPF1-206ENST00000598471 ATP23Q9Y6H3 246 aa13.27□□□□□ -0.29
UPF1-206ENST00000598471 A3GALT2U3KPV4 340 aa13.27□□□□□ -0.29
UPF1-206ENST00000598471 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.26□□□□□ -0.29
UPF1-206ENST00000598471 IQCF6A8MYZ5 107 aa13.26□□□□□ -0.29
UPF1-206ENST00000598471 TIMM8AO60220 97 aaPredicted RBP13.26□□□□□ -0.29
UPF1-206ENST00000598471 GMDSO60547 372 aa13.26□□□□□ -0.29
UPF1-206ENST00000598471 ALDOBP05062 364 aa13.26□□□□□ -0.29
UPF1-206ENST00000598471 ADRA2CP18825 462 aa13.26□□□□□ -0.29
UPF1-206ENST00000598471 KITLGP21583 273 aa13.26□□□□□ -0.29
UPF1-206ENST00000598471 MPV17P39210 176 aa13.26□□□□□ -0.29
UPF1-206ENST00000598471 CAV3P56539 151 aa13.26□□□□□ -0.29
UPF1-206ENST00000598471 OR10A3P58181 314 aa13.26□□□□□ -0.29
UPF1-206ENST00000598471 IDNKQ5T6J7 187 aa13.26□□□□□ -0.29
UPF1-206ENST00000598471 PLCXD3Q63HM9 321 aa13.26□□□□□ -0.29
UPF1-206ENST00000598471 MZT2AQ6P582 158 aa13.26□□□□□ -0.29
UPF1-206ENST00000598471 MOB3CQ70IA8 216 aa13.26□□□□□ -0.29
UPF1-206ENST00000598471 KRT74Q7RTS7 529 aa13.26□□□□□ -0.29
UPF1-206ENST00000598471 ZDHHC23Q8IYP9 409 aa13.26□□□□□ -0.29
UPF1-206ENST00000598471 JAGN1Q8N5M9 183 aa13.26□□□□□ -0.29
UPF1-206ENST00000598471 BHLHE23Q8NDY6 225 aa13.26□□□□□ -0.29
UPF1-206ENST00000598471 OR51A2Q8NGJ7 313 aa13.26□□□□□ -0.29
UPF1-206ENST00000598471 UBASH3BQ8TF42 649 aa13.26□□□□□ -0.29
UPF1-206ENST00000598471 FAM222BQ8WU58 562 aa13.26□□□□□ -0.29
UPF1-206ENST00000598471 ACOT12Q8WYK0 555 aa13.26□□□□□ -0.29
UPF1-206ENST00000598471 MRI1Q9BV20 369 aa13.26□□□□□ -0.29
UPF1-206ENST00000598471 BARHL1Q9BZE3 327 aa13.26□□□□□ -0.29
UPF1-206ENST00000598471 SLIRPQ9GZT3 109 aaKnown RBP13.26□□□□□ -0.29
UPF1-206ENST00000598471 SLC22A4Q9H015 551 aa13.26□□□□□ -0.29
UPF1-206ENST00000598471 ZNF442Q9H7R0 627 aa13.26□□□□□ -0.29
UPF1-206ENST00000598471 PLGRKTQ9HBL7 147 aa13.26□□□□□ -0.29
UPF1-206ENST00000598471 DAPK2Q9UIK4 370 aa13.26□□□□□ -0.29
UPF1-206ENST00000598471 PURGQ9UJV8 347 aaKnown RBP13.26□□□□□ -0.29
UPF1-206ENST00000598471 NOP16Q9Y3C1 178 aaKnown RBP13.26□□□□□ -0.29
UPF1-206ENST00000598471 RHBDD3Q9Y3P4 386 aa13.26□□□□□ -0.29
UPF1-206ENST00000598471 CMAHPQ9Y471 501 aa13.26□□□□□ -0.29
UPF1-206ENST00000598471 RNF115Q9Y4L5 304 aa13.26□□□□□ -0.29
UPF1-206ENST00000598471 A0A075B6Q4 140 aa13.25□□□□□ -0.29
UPF1-206ENST00000598471 A0A0G2JK05 382 aa13.25□□□□□ -0.29
UPF1-206ENST00000598471 IFITM5A6NNB3 132 aa13.25□□□□□ -0.29
UPF1-206ENST00000598471 ZNF850A8MQ14 1090 aa13.25□□□□□ -0.29
UPF1-206ENST00000598471 AIPO00170 330 aa13.25□□□□□ -0.29
UPF1-206ENST00000598471 PRF1P14222 555 aa13.25□□□□□ -0.29
UPF1-206ENST00000598471 ZNF250P15622 560 aa13.25□□□□□ -0.29
UPF1-206ENST00000598471 AZGP1P25311 298 aaKnown RBP13.25□□□□□ -0.29
UPF1-206ENST00000598471 FABP6P51161 128 aa13.25□□□□□ -0.29
UPF1-206ENST00000598471 KLF3P57682 345 aaPredicted RBP13.25□□□□□ -0.29
UPF1-206ENST00000598471 PSG7Q13046 419 aa13.25□□□□□ -0.29
UPF1-206ENST00000598471 PRDX4Q13162 271 aa13.25□□□□□ -0.29
UPF1-206ENST00000598471 DYNC1I2Q13409 638 aaKnown RBP13.25□□□□□ -0.29
UPF1-206ENST00000598471 UBE2V2Q15819 145 aa13.25□□□□□ -0.29
UPF1-206ENST00000598471 MOGQ16653 247 aa13.25□□□□□ -0.29
UPF1-206ENST00000598471 ADAM5Q6NVV9 412 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms