RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 PLGRKTQ9HBL7 147 aa13.12□□□□□ -0.31
TRIM28-209ENST00000597423 MRPL15Q9P015 296 aaKnown RBP13.12□□□□□ -0.31
TRIM28-209ENST00000597423 NOP16Q9Y3C1 178 aaKnown RBP13.12□□□□□ -0.31
TRIM28-209ENST00000597423 MPC1Q9Y5U8 109 aa13.12□□□□□ -0.31
TRIM28-209ENST00000597423 A0A075B6Q4 140 aa13.11□□□□□ -0.31
TRIM28-209ENST00000597423 SHISA3A0PJX4 238 aa13.11□□□□□ -0.31
TRIM28-209ENST00000597423 IFITM5A6NNB3 132 aa13.11□□□□□ -0.31
TRIM28-209ENST00000597423 ABCD4O14678 606 aa13.11□□□□□ -0.31
TRIM28-209ENST00000597423 CLPXO76031 633 aa13.11□□□□□ -0.31
TRIM28-209ENST00000597423 HCKP08631 526 aa13.11□□□□□ -0.31
TRIM28-209ENST00000597423 ACKR3P25106 362 aa13.11□□□□□ -0.31
TRIM28-209ENST00000597423 S100A5P33763 92 aa13.11□□□□□ -0.31
TRIM28-209ENST00000597423 KIR2DL3P43628 341 aa13.11□□□□□ -0.31
TRIM28-209ENST00000597423 FABP6P51161 128 aa13.11□□□□□ -0.31
TRIM28-209ENST00000597423 BSPH1Q075Z2 132 aa13.11□□□□□ -0.31
TRIM28-209ENST00000597423 SPOCK1Q08629 439 aa13.11□□□□□ -0.31
TRIM28-209ENST00000597423 CEP78Q5JTW2 689 aa13.11□□□□□ -0.31
TRIM28-209ENST00000597423 SPATA46Q5T0L3 261 aa13.11□□□□□ -0.31
TRIM28-209ENST00000597423 NCMAPQ5T1S8 102 aa13.11□□□□□ -0.31
TRIM28-209ENST00000597423 TMEM42Q69YG0 159 aa13.11□□□□□ -0.31
TRIM28-209ENST00000597423 SFXN4Q6P4A7 337 aa13.11□□□□□ -0.31
TRIM28-209ENST00000597423 MOB3CQ70IA8 216 aa13.11□□□□□ -0.31
TRIM28-209ENST00000597423 OR56B2PQ8NGI1 322 aa13.11□□□□□ -0.31
TRIM28-209ENST00000597423 OR13C9Q8NGT0 318 aa13.11□□□□□ -0.31
TRIM28-209ENST00000597423 SYNPRQ8TBG9 265 aa13.11□□□□□ -0.31
TRIM28-209ENST00000597423 ORAI1Q96D31 301 aa13.11□□□□□ -0.31
TRIM28-209ENST00000597423 UQCC2Q9BRT2 126 aa13.11□□□□□ -0.31
TRIM28-209ENST00000597423 SLIRPQ9GZT3 109 aaKnown RBP13.11□□□□□ -0.31
TRIM28-209ENST00000597423 ABRACLQ9P1F3 81 aa13.11□□□□□ -0.31
TRIM28-209ENST00000597423 GPR160Q9UJ42 338 aa13.11□□□□□ -0.31
TRIM28-209ENST00000597423 CMAHPQ9Y471 501 aa13.11□□□□□ -0.31
TRIM28-209ENST00000597423 PEX16Q9Y5Y5 336 aa13.11□□□□□ -0.31
TRIM28-209ENST00000597423 ATP23Q9Y6H3 246 aa13.11□□□□□ -0.31
TRIM28-209ENST00000597423 SPENQ96T58 3664 aaKnown RBP13.1□□□□□ -0.31
TRIM28-209ENST00000597423 AIPO00170 330 aa13.1□□□□□ -0.31
TRIM28-209ENST00000597423 NCR1O76036 304 aa13.1□□□□□ -0.31
TRIM28-209ENST00000597423 KITLGP21583 273 aa13.1□□□□□ -0.31
TRIM28-209ENST00000597423 ANOS1P23352 680 aa13.1□□□□□ -0.31
TRIM28-209ENST00000597423 FUT6P51993 359 aa13.1□□□□□ -0.31
TRIM28-209ENST00000597423 MZT1Q08AG7 82 aa13.1□□□□□ -0.31
TRIM28-209ENST00000597423 CDSNQ15517 529 aa13.1□□□□□ -0.31
TRIM28-209ENST00000597423 DDI2Q5TDH0 399 aa13.1□□□□□ -0.31
TRIM28-209ENST00000597423 OR2T2Q6IF00 324 aa13.1□□□□□ -0.31
TRIM28-209ENST00000597423 JAGN1Q8N5M9 183 aa13.1□□□□□ -0.31
TRIM28-209ENST00000597423 PNLDC1Q8NA58 520 aaKnown RBP13.1□□□□□ -0.31
TRIM28-209ENST00000597423 DNAAF1Q8NEP3 725 aa13.1□□□□□ -0.31
TRIM28-209ENST00000597423 ZNF671Q8TAW3 534 aa13.1□□□□□ -0.31
TRIM28-209ENST00000597423 FAM222BQ8WU58 562 aa13.1□□□□□ -0.31
TRIM28-209ENST00000597423 PLPPR2Q96GM1 343 aa13.1□□□□□ -0.31
TRIM28-209ENST00000597423 SORCS2Q96PQ0 1159 aa13.1□□□□□ -0.31
TRIM28-209ENST00000597423 TSC22D3Q99576 134 aa13.1□□□□□ -0.31
TRIM28-209ENST00000597423 PAPOLGQ9BWT3 736 aaKnown RBP13.1□□□□□ -0.31
TRIM28-209ENST00000597423 NXF2Q9GZY0 626 aaKnown RBP13.1□□□□□ -0.31
TRIM28-209ENST00000597423 POFUT1Q9H488 388 aa13.1□□□□□ -0.31
TRIM28-209ENST00000597423 TMEM100Q9NV29 134 aa13.1□□□□□ -0.31
TRIM28-209ENST00000597423 PLEKHB1Q9UF11 243 aaPredicted RBP13.1□□□□□ -0.31
TRIM28-209ENST00000597423 DAPK2Q9UIK4 370 aa13.1□□□□□ -0.31
TRIM28-209ENST00000597423 PURGQ9UJV8 347 aaKnown RBP13.1□□□□□ -0.31
TRIM28-209ENST00000597423 POU2F3Q9UKI9 436 aa13.1□□□□□ -0.31
TRIM28-209ENST00000597423 RHBDD3Q9Y3P4 386 aa13.1□□□□□ -0.31
TRIM28-209ENST00000597423 KALRNO60229 2985 aa13.09□□□□□ -0.31
TRIM28-209ENST00000597423 IQCF6A8MYZ5 107 aa13.09□□□□□ -0.31
TRIM28-209ENST00000597423 ATP6V1G2-DDX39BF2Z307 99 aa13.09□□□□□ -0.31
TRIM28-209ENST00000597423 TIMM8AO60220 97 aaPredicted RBP13.09□□□□□ -0.31
TRIM28-209ENST00000597423 CD37P11049 281 aa13.09□□□□□ -0.31
TRIM28-209ENST00000597423 PRF1P14222 555 aa13.09□□□□□ -0.31
TRIM28-209ENST00000597423 ZNF250P15622 560 aa13.09□□□□□ -0.31
TRIM28-209ENST00000597423 ADRA2CP18825 462 aa13.09□□□□□ -0.31
TRIM28-209ENST00000597423 ZNF93P35789 620 aaPredicted RBP13.09□□□□□ -0.31
TRIM28-209ENST00000597423 ATP1B3P54709 279 aa13.09□□□□□ -0.31
TRIM28-209ENST00000597423 CAV3P56539 151 aa13.09□□□□□ -0.31
TRIM28-209ENST00000597423 OR10A3P58181 314 aa13.09□□□□□ -0.31
TRIM28-209ENST00000597423 NKX6-1P78426 367 aaPredicted RBP13.09□□□□□ -0.31
TRIM28-209ENST00000597423 PSG7Q13046 419 aa13.09□□□□□ -0.31
TRIM28-209ENST00000597423 TNK1Q13470 666 aa13.09□□□□□ -0.31
TRIM28-209ENST00000597423 RAB11BQ15907 218 aa13.09□□□□□ -0.31
TRIM28-209ENST00000597423 CEACAM21Q3KPI0 293 aa13.09□□□□□ -0.31
TRIM28-209ENST00000597423 PLCXD3Q63HM9 321 aa13.09□□□□□ -0.31
TRIM28-209ENST00000597423 LHFPL2Q6ZUX7 228 aa13.09□□□□□ -0.31
TRIM28-209ENST00000597423 ZDHHC23Q8IYP9 409 aa13.09□□□□□ -0.31
TRIM28-209ENST00000597423 OR5A2Q8NGI9 324 aa13.09□□□□□ -0.31
TRIM28-209ENST00000597423 OR6M1Q8NGM8 313 aa13.09□□□□□ -0.31
TRIM28-209ENST00000597423 GPER1Q99527 375 aa13.09□□□□□ -0.31
TRIM28-209ENST00000597423 MICU1Q9BPX6 476 aa13.09□□□□□ -0.31
TRIM28-209ENST00000597423 BARHL1Q9BZE3 327 aa13.09□□□□□ -0.31
TRIM28-209ENST00000597423 C6orf62Q9GZU0 229 aaPredicted RBP13.09□□□□□ -0.31
TRIM28-209ENST00000597423 METTL17Q9H7H0 456 aaPredicted RBP13.09□□□□□ -0.31
TRIM28-209ENST00000597423 ZNF442Q9H7R0 627 aa13.09□□□□□ -0.31
TRIM28-209ENST00000597423 GPR173Q9NS66 373 aa13.09□□□□□ -0.31
TRIM28-209ENST00000597423 NKIRAS2Q9NYR9 191 aa13.09□□□□□ -0.31
TRIM28-209ENST00000597423 STEAP1Q9UHE8 339 aa13.09□□□□□ -0.31
TRIM28-209ENST00000597423 ADAM30Q9UKF2 790 aa13.09□□□□□ -0.31
TRIM28-209ENST00000597423 NBASA2RRP1 2371 aa13.09□□□□□ -0.31
TRIM28-209ENST00000597423 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.08□□□□□ -0.32
TRIM28-209ENST00000597423 SMIM30A4D0T7 59 aa13.08□□□□□ -0.32
TRIM28-209ENST00000597423 ZNF850A8MQ14 1090 aa13.08□□□□□ -0.32
TRIM28-209ENST00000597423 SLC17A2O00624 439 aa13.08□□□□□ -0.32
TRIM28-209ENST00000597423 CALCBP10092 127 aa13.08□□□□□ -0.32
TRIM28-209ENST00000597423 AZGP1P25311 298 aaKnown RBP13.08□□□□□ -0.32
TRIM28-209ENST00000597423 CFPP27918 469 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms