RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 SDHAF3Q9NRP4 125 aa13.56□□□□□ -0.24
UPF1-204ENST00000596842 OR5AC2Q9NZP5 309 aa13.56□□□□□ -0.24
UPF1-204ENST00000596842 CLEC1BQ9P126 229 aa13.56□□□□□ -0.24
UPF1-204ENST00000596842 ZNF629Q9UEG4 869 aaPredicted RBP13.56□□□□□ -0.24
UPF1-204ENST00000596842 NOSIPQ9Y314 301 aaKnown RBP13.56□□□□□ -0.24
UPF1-204ENST00000596842 RHBDD3Q9Y3P4 386 aa13.56□□□□□ -0.24
UPF1-204ENST00000596842 MS4A18H0YCH9 400 aa13.55□□□□□ -0.24
UPF1-204ENST00000596842 DXOO77932 396 aaKnown RBP13.55□□□□□ -0.24
UPF1-204ENST00000596842 IGKV3-11P04433 115 aa13.55□□□□□ -0.24
UPF1-204ENST00000596842 CRHP06850 196 aa13.55□□□□□ -0.24
UPF1-204ENST00000596842 MS4A18Q3C1V0 323 aa13.55□□□□□ -0.24
UPF1-204ENST00000596842 H1FNTQ75WM6 255 aaPredicted RBP13.55□□□□□ -0.24
UPF1-204ENST00000596842 OR5B2Q96R09 309 aa13.55□□□□□ -0.24
UPF1-204ENST00000596842 GPR84Q9NQS5 396 aa13.55□□□□□ -0.24
UPF1-204ENST00000596842 TCAPO15273 167 aa13.55□□□□□ -0.24
UPF1-204ENST00000596842 ZNF217O75362 1048 aa13.55□□□□□ -0.24
UPF1-204ENST00000596842 CD8AP01732 235 aa13.55□□□□□ -0.24
UPF1-204ENST00000596842 S100A8P05109 93 aa13.55□□□□□ -0.24
UPF1-204ENST00000596842 ACER2Q5QJU3 275 aa13.55□□□□□ -0.24
UPF1-204ENST00000596842 OR51T1Q8NGJ9 327 aa13.55□□□□□ -0.24
UPF1-204ENST00000596842 OR5H2Q8NGV7 314 aa13.55□□□□□ -0.24
UPF1-204ENST00000596842 TMEM59Q9BXS4 323 aa13.55□□□□□ -0.24
UPF1-204ENST00000596842 A0A1B0GTI1 187 aa13.55□□□□□ -0.24
UPF1-204ENST00000596842 CXorf65A6NEN9 183 aa13.55□□□□□ -0.24
UPF1-204ENST00000596842 IFNA4P05014 189 aa13.55□□□□□ -0.24
UPF1-204ENST00000596842 IGFBP3P17936 291 aaPredicted RBP13.55□□□□□ -0.24
UPF1-204ENST00000596842 TMEM234Q8WY98 164 aa13.55□□□□□ -0.24
UPF1-204ENST00000596842 LIN37Q96GY3 246 aaPredicted RBP13.55□□□□□ -0.24
UPF1-204ENST00000596842 THOC3Q96J01 351 aaKnown RBP13.55□□□□□ -0.24
UPF1-204ENST00000596842 ZFP57Q9NU63 452 aa13.55□□□□□ -0.24
UPF1-204ENST00000596842 EHFQ9NZC4 300 aa13.55□□□□□ -0.24
UPF1-204ENST00000596842 VSTM2BA6NLU5 285 aa13.54□□□□□ -0.24
UPF1-204ENST00000596842 EIF1BO60739 113 aaKnown RBP13.54□□□□□ -0.24
UPF1-204ENST00000596842 RCC1P18754 421 aaPredicted RBP13.54□□□□□ -0.24
UPF1-204ENST00000596842 EIF1P41567 113 aaKnown RBP13.54□□□□□ -0.24
UPF1-204ENST00000596842 NPBWR1P48145 328 aa13.54□□□□□ -0.24
UPF1-204ENST00000596842 ZSCAN4Q8NAM6 433 aaPredicted RBP13.54□□□□□ -0.24
UPF1-204ENST00000596842 FN3KRPQ9HA64 309 aa13.54□□□□□ -0.24
UPF1-204ENST00000596842 A0A1B0GTQ1 180 aa13.54□□□□□ -0.24
UPF1-204ENST00000596842 TSPAN2O60636 221 aa13.54□□□□□ -0.24
UPF1-204ENST00000596842 ANOS1P23352 680 aa13.54□□□□□ -0.24
UPF1-204ENST00000596842 RAB32Q13637 225 aa13.54□□□□□ -0.24
UPF1-204ENST00000596842 LPCAT3Q6P1A2 487 aa13.54□□□□□ -0.24
UPF1-204ENST00000596842 BATF2Q8N1L9 274 aa13.54□□□□□ -0.24
UPF1-204ENST00000596842 NKAIN3Q8N8D7 197 aa13.54□□□□□ -0.24
UPF1-204ENST00000596842 AQP3Q92482 292 aa13.54□□□□□ -0.24
UPF1-204ENST00000596842 S100A13Q99584 98 aa13.54□□□□□ -0.24
UPF1-204ENST00000596842 BARX1Q9HBU1 254 aaPredicted RBP13.54□□□□□ -0.24
UPF1-204ENST00000596842 CACNA1DQ01668 2161 aa13.54□□□□□ -0.24
UPF1-204ENST00000596842 MED6O75586 246 aa13.54□□□□□ -0.24
UPF1-204ENST00000596842 CD38P28907 300 aa13.54□□□□□ -0.24
UPF1-204ENST00000596842 SSBP1Q04837 148 aaKnown RBP13.54□□□□□ -0.24
UPF1-204ENST00000596842 PRAMEF20Q5VT98 475 aa13.54□□□□□ -0.24
UPF1-204ENST00000596842 FDX2Q6P4F2 183 aa13.54□□□□□ -0.24
UPF1-204ENST00000596842 ZNF813Q6ZN06 617 aa13.54□□□□□ -0.24
UPF1-204ENST00000596842 CD74P04233 296 aa13.53□□□□□ -0.24
UPF1-204ENST00000596842 ADCYAP1P18509 176 aa13.53□□□□□ -0.24
UPF1-204ENST00000596842 RFC3P40938 356 aa13.53□□□□□ -0.24
UPF1-204ENST00000596842 DAP3P51398 398 aaKnown RBP13.53□□□□□ -0.24
UPF1-204ENST00000596842 LRRC18Q8N456 261 aa13.53□□□□□ -0.24
UPF1-204ENST00000596842 OR1N1Q8NGS0 311 aa13.53□□□□□ -0.24
UPF1-204ENST00000596842 PIK3IP1Q96FE7 263 aa13.53□□□□□ -0.24
UPF1-204ENST00000596842 FGF21Q9NSA1 209 aa13.53□□□□□ -0.24
UPF1-204ENST00000596842 LSM5Q9Y4Y9 91 aaKnown RBP13.53□□□□□ -0.24
UPF1-204ENST00000596842 URGCP-MRPS24S4R325 110 aa13.53□□□□□ -0.24
UPF1-204ENST00000596842 BTBD17A6NE02 478 aa13.53□□□□□ -0.24
UPF1-204ENST00000596842 H0YIZ8 118 aa13.53□□□□□ -0.24
UPF1-204ENST00000596842 PHOX2AO14813 284 aa13.53□□□□□ -0.24
UPF1-204ENST00000596842 NDUFB7P17568 137 aa13.53□□□□□ -0.24
UPF1-204ENST00000596842 GABRR1P24046 479 aa13.53□□□□□ -0.24
UPF1-204ENST00000596842 ZNF121P58317 390 aaPredicted RBP13.53□□□□□ -0.24
UPF1-204ENST00000596842 CLEC18BQ6UXF7 455 aa13.53□□□□□ -0.24
UPF1-204ENST00000596842 TERB2Q8NHR7 220 aa13.53□□□□□ -0.24
UPF1-204ENST00000596842 ASB10Q8WXI3 467 aa13.53□□□□□ -0.24
UPF1-204ENST00000596842 SLAMF9Q96A28 289 aa13.53□□□□□ -0.24
UPF1-204ENST00000596842 METTL7AQ9H8H3 244 aa13.53□□□□□ -0.24
UPF1-204ENST00000596842 KLHL13Q9P2N7 655 aa13.53□□□□□ -0.24
UPF1-204ENST00000596842 CDCP2Q5VXM1 449 aa13.53□□□□□ -0.24
UPF1-204ENST00000596842 ETV3LQ6ZN32 361 aa13.53□□□□□ -0.24
UPF1-204ENST00000596842 RNF141Q8WVD5 230 aa13.53□□□□□ -0.24
UPF1-204ENST00000596842 TOMM40LQ969M1 308 aa13.53□□□□□ -0.24
UPF1-204ENST00000596842 COA4Q9NYJ1 87 aa13.53□□□□□ -0.24
UPF1-204ENST00000596842 BLACEA4D250 179 aa13.52□□□□□ -0.24
UPF1-204ENST00000596842 HSPB2A8KAH6 182 aa13.52□□□□□ -0.24
UPF1-204ENST00000596842 GATCO43716 136 aaKnown RBP13.52□□□□□ -0.24
UPF1-204ENST00000596842 LRP3O75074 770 aa13.52□□□□□ -0.24
UPF1-204ENST00000596842 DUS4LO95620 317 aaKnown RBP13.52□□□□□ -0.24
UPF1-204ENST00000596842 KLK2P20151 261 aa13.52□□□□□ -0.24
UPF1-204ENST00000596842 RAB6AP20340 208 aa13.52□□□□□ -0.24
UPF1-204ENST00000596842 CD80P33681 288 aa13.52□□□□□ -0.24
UPF1-204ENST00000596842 HSPB2Q16082 182 aa13.52□□□□□ -0.24
UPF1-204ENST00000596842 PIGTQ969N2 578 aa13.52□□□□□ -0.24
UPF1-204ENST00000596842 ATG101Q9BSB4 218 aa13.52□□□□□ -0.24
UPF1-204ENST00000596842 PPP4R1LQ9P1A2 415 aa13.52□□□□□ -0.24
UPF1-204ENST00000596842 CBY1Q9Y3M2 126 aa13.52□□□□□ -0.24
UPF1-204ENST00000596842 MMACHCQ9Y4U1 282 aa13.52□□□□□ -0.24
UPF1-204ENST00000596842 SELLP14151 372 aa13.52□□□□□ -0.25
UPF1-204ENST00000596842 BLVRBP30043 206 aaPredicted RBP13.52□□□□□ -0.25
UPF1-204ENST00000596842 RNF4P78317 190 aa13.52□□□□□ -0.25
UPF1-204ENST00000596842 HSD11B2P80365 405 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms