RNA–Protein interactions for RNA: ENST00000582792.5

SS18-222, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 5

Gene SS18, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-222	ENST00000582792	IGHV4-59	P01825	116 aa		11.22	□□□□□ -0.61
SS18-222	ENST00000582792	IER3	P46695	156 aa		11.22	□□□□□ -0.61
SS18-222	ENST00000582792	EFNB1	P98172	346 aa		11.22	□□□□□ -0.61
SS18-222	ENST00000582792	HOXA4	Q00056	320 aa	Predicted RBP	11.22	□□□□□ -0.61
SS18-222	ENST00000582792	RIPK1	Q13546	671 aa		11.22	□□□□□ -0.61
SS18-222	ENST00000582792	CRMP1	Q14194	572 aa		11.22	□□□□□ -0.61
SS18-222	ENST00000582792	GK2	Q14410	553 aa	Predicted RBP	11.22	□□□□□ -0.61
SS18-222	ENST00000582792	MPPED2	Q15777	294 aa		11.22	□□□□□ -0.61
SS18-222	ENST00000582792	KCNJ8	Q15842	424 aa		11.22	□□□□□ -0.61
SS18-222	ENST00000582792	RSPO1	Q2MKA7	263 aa	Predicted RBP	11.22	□□□□□ -0.61
SS18-222	ENST00000582792	METTL11B	Q5VVY1	283 aa		11.22	□□□□□ -0.61
SS18-222	ENST00000582792	PRAMEF6	Q5VXH4	476 aa		11.22	□□□□□ -0.61
SS18-222	ENST00000582792	LDLRAD3	Q86YD5	345 aa		11.22	□□□□□ -0.61
SS18-222	ENST00000582792	PNLDC1	Q8NA58	520 aa	Known RBP	11.22	□□□□□ -0.61
SS18-222	ENST00000582792	SLC29A1	Q99808	456 aa		11.22	□□□□□ -0.61
SS18-222	ENST00000582792	SIRPD	Q9H106	197 aa		11.22	□□□□□ -0.61
SS18-222	ENST00000582792	RNPEPL1	Q9HAU8	725 aa		11.22	□□□□□ -0.61
SS18-222	ENST00000582792	TCF7L1	Q9HCS4	588 aa		11.22	□□□□□ -0.61
SS18-222	ENST00000582792	SRA1	Q9HD15	236 aa	Known RBP	11.22	□□□□□ -0.61
SS18-222	ENST00000582792	RPRD1B	Q9NQG5	326 aa	Known RBP	11.22	□□□□□ -0.61
SS18-222	ENST00000582792	UFSP2	Q9NUQ7	469 aa		11.22	□□□□□ -0.61
SS18-222	ENST00000582792	KCNG2	Q9UJ96	466 aa		11.22	□□□□□ -0.61
SS18-222	ENST00000582792		A0A0U1RQK1	487 aa		11.21	□□□□□ -0.61
SS18-222	ENST00000582792	PRR23D1	E9PI22	279 aa	Predicted RBP	11.21	□□□□□ -0.61
SS18-222	ENST00000582792	LGALS8	O00214	317 aa		11.21	□□□□□ -0.61
SS18-222	ENST00000582792	DCTN6	O00399	190 aa		11.21	□□□□□ -0.61
SS18-222	ENST00000582792	ACSM4	P0C7M7	580 aa		11.21	□□□□□ -0.61
SS18-222	ENST00000582792	PRR23D2	P0DMB1	279 aa	Predicted RBP	11.21	□□□□□ -0.61
SS18-222	ENST00000582792	PRSS12	P56730	875 aa		11.21	□□□□□ -0.61
SS18-222	ENST00000582792	SLC34A1	Q06495	639 aa		11.21	□□□□□ -0.61
SS18-222	ENST00000582792	SNAPC1	Q16533	368 aa		11.21	□□□□□ -0.61
SS18-222	ENST00000582792	MEP1B	Q16820	701 aa		11.21	□□□□□ -0.61
SS18-222	ENST00000582792	KRTAP27-1	Q3LI81	207 aa		11.21	□□□□□ -0.61
SS18-222	ENST00000582792	SLC35D3	Q5M8T2	416 aa		11.21	□□□□□ -0.61
SS18-222	ENST00000582792	OGFRL1	Q5TC84	451 aa	Predicted RBP	11.21	□□□□□ -0.61
SS18-222	ENST00000582792	TMEM236	Q5W0B7	351 aa		11.21	□□□□□ -0.61
SS18-222	ENST00000582792	ZSCAN4	Q8NAM6	433 aa	Predicted RBP	11.21	□□□□□ -0.61
SS18-222	ENST00000582792	CYB561A3	Q8NBI2	242 aa		11.21	□□□□□ -0.61
SS18-222	ENST00000582792	TRUB1	Q8WWH5	349 aa	Known RBP	11.21	□□□□□ -0.61
SS18-222	ENST00000582792	LHX4	Q969G2	390 aa		11.21	□□□□□ -0.61
SS18-222	ENST00000582792	HRASLS5	Q96KN8	279 aa		11.21	□□□□□ -0.61
SS18-222	ENST00000582792	TSSK2	Q96PF2	358 aa		11.21	□□□□□ -0.61
SS18-222	ENST00000582792	FN3KRP	Q9HA64	309 aa		11.21	□□□□□ -0.61
SS18-222	ENST00000582792	SMURF1	Q9HCE7	757 aa		11.21	□□□□□ -0.61
SS18-222	ENST00000582792	TVP23B	Q9NYZ1	205 aa		11.21	□□□□□ -0.61
SS18-222	ENST00000582792	RNF7	Q9UBF6	113 aa		11.21	□□□□□ -0.61
SS18-222	ENST00000582792	PRODH	O43272	600 aa		11.2	□□□□□ -0.62
SS18-222	ENST00000582792	ADAM20	O43506	726 aa		11.2	□□□□□ -0.62
SS18-222	ENST00000582792	NDUFA2	O43678	99 aa		11.2	□□□□□ -0.62
SS18-222	ENST00000582792	SPI1	P17947	270 aa		11.2	□□□□□ -0.62
SS18-222	ENST00000582792	EPHA2	P29317	976 aa		11.2	□□□□□ -0.62
SS18-222	ENST00000582792	CDC42	P60953	191 aa		11.2	□□□□□ -0.62
SS18-222	ENST00000582792	C2orf68	Q2NKX9	166 aa		11.2	□□□□□ -0.62
SS18-222	ENST00000582792	SFRP4	Q6FHJ7	346 aa	Predicted RBP	11.2	□□□□□ -0.62
SS18-222	ENST00000582792	CORO6	Q6QEF8	472 aa		11.2	□□□□□ -0.62
SS18-222	ENST00000582792	GDPGP1	Q6ZNW5	385 aa		11.2	□□□□□ -0.62
SS18-222	ENST00000582792		Q6ZSV7	163 aa		11.2	□□□□□ -0.62
SS18-222	ENST00000582792	PGAP1	Q75T13	922 aa		11.2	□□□□□ -0.62
SS18-222	ENST00000582792	ZSCAN2	Q7Z7L9	614 aa	Predicted RBP	11.2	□□□□□ -0.62
SS18-222	ENST00000582792	SCCPDH	Q8NBX0	429 aa		11.2	□□□□□ -0.62
SS18-222	ENST00000582792	SLC26A10	Q8NG04	563 aa		11.2	□□□□□ -0.62
SS18-222	ENST00000582792	FAM110D	Q8TAY7	271 aa	Predicted RBP	11.2	□□□□□ -0.62
SS18-222	ENST00000582792	PITX2	Q99697	317 aa		11.2	□□□□□ -0.62
SS18-222	ENST00000582792	DPAGT1	Q9H3H5	408 aa		11.2	□□□□□ -0.62
SS18-222	ENST00000582792	RIBC2	Q9H4K1	309 aa		11.2	□□□□□ -0.62
SS18-222	ENST00000582792	C16orf95	Q9H693	158 aa		11.2	□□□□□ -0.62
SS18-222	ENST00000582792	TRIM36	Q9NQ86	728 aa		11.2	□□□□□ -0.62
SS18-222	ENST00000582792	NOP16	Q9Y3C1	178 aa	Known RBP	11.2	□□□□□ -0.62
SS18-222	ENST00000582792	TRAV38-1	A0A0B4J264	116 aa		11.19	□□□□□ -0.62
SS18-222	ENST00000582792	C3orf80	F5H4A9	247 aa		11.19	□□□□□ -0.62
SS18-222	ENST00000582792		F5H5K5	113 aa		11.19	□□□□□ -0.62
SS18-222	ENST00000582792	SLC16A6	O15403	523 aa		11.19	□□□□□ -0.62
SS18-222	ENST00000582792	GLCE	O94923	617 aa		11.19	□□□□□ -0.62
SS18-222	ENST00000582792	PTBP3	O95758	552 aa	Known RBP	11.19	□□□□□ -0.62
SS18-222	ENST00000582792	FMO3	P31513	532 aa		11.19	□□□□□ -0.62
SS18-222	ENST00000582792	POLR2I	P36954	125 aa	Known RBP	11.19	□□□□□ -0.62
SS18-222	ENST00000582792	ARF6	P62330	175 aa		11.19	□□□□□ -0.62
SS18-222	ENST00000582792	MALL	Q13021	153 aa		11.19	□□□□□ -0.62
SS18-222	ENST00000582792	OR8G1	Q15617	311 aa		11.19	□□□□□ -0.62
SS18-222	ENST00000582792	OR8B8	Q15620	311 aa		11.19	□□□□□ -0.62
SS18-222	ENST00000582792	C11orf91	Q3C1V1	193 aa		11.19	□□□□□ -0.62
SS18-222	ENST00000582792	FBLN7	Q53RD9	439 aa		11.19	□□□□□ -0.62
SS18-222	ENST00000582792	TEX30	Q5JUR7	227 aa		11.19	□□□□□ -0.62
SS18-222	ENST00000582792	LINC01590	Q5TEZ4	76 aa		11.19	□□□□□ -0.62
SS18-222	ENST00000582792	CFAP77	Q6ZQR2	320 aa		11.19	□□□□□ -0.62
SS18-222	ENST00000582792	PLPP7	Q8NBV4	271 aa		11.19	□□□□□ -0.62
SS18-222	ENST00000582792	PROKR2	Q8NFJ6	384 aa		11.19	□□□□□ -0.62
SS18-222	ENST00000582792	OR8J1	Q8NGP2	316 aa		11.19	□□□□□ -0.62
SS18-222	ENST00000582792	TMEM163	Q8TC26	289 aa		11.19	□□□□□ -0.62
SS18-222	ENST00000582792	SPRYD4	Q8WW59	207 aa	Predicted RBP	11.19	□□□□□ -0.62
SS18-222	ENST00000582792	SLC22A4	Q9H015	551 aa		11.19	□□□□□ -0.62
SS18-222	ENST00000582792	RASSF4	Q9H2L5	321 aa		11.19	□□□□□ -0.62
SS18-222	ENST00000582792	TOR3A	Q9H497	397 aa		11.19	□□□□□ -0.62
SS18-222	ENST00000582792	SMPD3	Q9NY59	655 aa	Predicted RBP	11.19	□□□□□ -0.62
SS18-222	ENST00000582792	C5orf63	A6NC05	138 aa		11.18	□□□□□ -0.62
SS18-222	ENST00000582792	OOEP	A6NGQ2	149 aa		11.18	□□□□□ -0.62
SS18-222	ENST00000582792		H0YJX3	145 aa		11.18	□□□□□ -0.62
SS18-222	ENST00000582792	GMDS	O60547	372 aa		11.18	□□□□□ -0.62
SS18-222	ENST00000582792	FCN3	O75636	299 aa		11.18	□□□□□ -0.62
SS18-222	ENST00000582792	LCAT	P04180	440 aa		11.18	□□□□□ -0.62

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