RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 M0QZ24 198 aa12.3□□□□□ -0.44
CLN3-236ENST00000568558 TNFRSF11BO00300 401 aa12.3□□□□□ -0.44
CLN3-236ENST00000568558 TIMM23O14925 209 aa12.3□□□□□ -0.44
CLN3-236ENST00000568558 TBX1O43435 398 aa12.3□□□□□ -0.44
CLN3-236ENST00000568558 GASTP01350 101 aa12.3□□□□□ -0.44
CLN3-236ENST00000568558 CLUP10909 449 aa12.3□□□□□ -0.44
CLN3-236ENST00000568558 MUC1P15941 1255 aaPredicted RBP12.3□□□□□ -0.44
CLN3-236ENST00000568558 SPI1P17947 270 aa12.3□□□□□ -0.44
CLN3-236ENST00000568558 GRK5P34947 590 aa12.3□□□□□ -0.44
CLN3-236ENST00000568558 IER3P46695 156 aa12.3□□□□□ -0.44
CLN3-236ENST00000568558 CX3CR1P49238 355 aa12.3□□□□□ -0.44
CLN3-236ENST00000568558 SLC25A1P53007 311 aa12.3□□□□□ -0.44
CLN3-236ENST00000568558 GRB2P62993 217 aaKnown RBP12.3□□□□□ -0.44
CLN3-236ENST00000568558 ELF3P78545 371 aaPredicted RBP12.3□□□□□ -0.44
CLN3-236ENST00000568558 PPP1R8Q12972 351 aaKnown RBP12.3□□□□□ -0.44
CLN3-236ENST00000568558 TIGD6Q17RP2 521 aa12.3□□□□□ -0.44
CLN3-236ENST00000568558 MICBQ29980 383 aa12.3□□□□□ -0.44
CLN3-236ENST00000568558 DNAL1Q4LDG9 190 aa12.3□□□□□ -0.44
CLN3-236ENST00000568558 WDR38Q5JTN6 314 aa12.3□□□□□ -0.44
CLN3-236ENST00000568558 WDR82Q6UXN9 313 aa12.3□□□□□ -0.44
CLN3-236ENST00000568558 DPY19L4Q7Z388 723 aa12.3□□□□□ -0.44
CLN3-236ENST00000568558 PDZD9Q8IXQ8 264 aa12.3□□□□□ -0.44
CLN3-236ENST00000568558 ADGRG5Q8IZF4 528 aa12.3□□□□□ -0.44
CLN3-236ENST00000568558 PIP4P2Q8N4L2 257 aa12.3□□□□□ -0.44
CLN3-236ENST00000568558 LY6G5BQ8NDX9 201 aa12.3□□□□□ -0.44
CLN3-236ENST00000568558 OR4Q3Q8NH05 313 aa12.3□□□□□ -0.44
CLN3-236ENST00000568558 LINC01006Q8NI28 216 aa12.3□□□□□ -0.44
CLN3-236ENST00000568558 TSSK6Q9BXA6 273 aa12.3□□□□□ -0.44
CLN3-236ENST00000568558 MMP27Q9H306 513 aa12.3□□□□□ -0.44
CLN3-236ENST00000568558 MAGIXQ9H6Y5 334 aa12.3□□□□□ -0.44
CLN3-236ENST00000568558 CNTD2Q9H8S5 307 aa12.3□□□□□ -0.44
CLN3-236ENST00000568558 hCG_38984A0A1B0GV85 526 aa12.29□□□□□ -0.44
CLN3-236ENST00000568558 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.29□□□□□ -0.44
CLN3-236ENST00000568558 CLPXO76031 633 aa12.29□□□□□ -0.44
CLN3-236ENST00000568558 CCNB2O95067 398 aa12.29□□□□□ -0.44
CLN3-236ENST00000568558 ANXA2P07355 339 aaKnown RBP12.29□□□□□ -0.44
CLN3-236ENST00000568558 SLC15A1P46059 708 aa12.29□□□□□ -0.44
CLN3-236ENST00000568558 PROK1P58294 105 aa12.29□□□□□ -0.44
CLN3-236ENST00000568558 CSNK2BP67870 215 aa12.29□□□□□ -0.44
CLN3-236ENST00000568558 LINC01590Q5TEZ4 76 aa12.29□□□□□ -0.44
CLN3-236ENST00000568558 ASPHD2Q6ICH7 369 aa12.29□□□□□ -0.44
CLN3-236ENST00000568558 METAP1DQ6UB28 335 aaPredicted RBP12.29□□□□□ -0.44
CLN3-236ENST00000568558 PRSS45Q7RTY3 260 aa12.29□□□□□ -0.44
CLN3-236ENST00000568558 OR1M1Q8NGA1 313 aa12.29□□□□□ -0.44
CLN3-236ENST00000568558 OR6K6Q8NGW6 343 aa12.29□□□□□ -0.44
CLN3-236ENST00000568558 SGK3Q96BR1 496 aa12.29□□□□□ -0.44
CLN3-236ENST00000568558 REEP6Q96HR9 211 aa12.29□□□□□ -0.44
CLN3-236ENST00000568558 CCL13Q99616 98 aa12.29□□□□□ -0.44
CLN3-236ENST00000568558 CADM1Q9BY67 442 aaKnown RBP12.29□□□□□ -0.44
CLN3-236ENST00000568558 TOR3AQ9H497 397 aa12.29□□□□□ -0.44
CLN3-236ENST00000568558 BAIAP2Q9UQB8 552 aa12.29□□□□□ -0.44
CLN3-236ENST00000568558 GSC2O15499 205 aa12.28□□□□□ -0.44
CLN3-236ENST00000568558 TIPRLO75663 272 aa12.28□□□□□ -0.44
CLN3-236ENST00000568558 DNAJC8O75937 253 aaPredicted RBP12.28□□□□□ -0.44
CLN3-236ENST00000568558 SOX14O95416 240 aa12.28□□□□□ -0.44
CLN3-236ENST00000568558 HSD11B1P28845 292 aa12.28□□□□□ -0.44
CLN3-236ENST00000568558 BLVRAP53004 296 aa12.28□□□□□ -0.44
CLN3-236ENST00000568558 EIF2B1Q14232 305 aaKnown RBP12.28□□□□□ -0.44
CLN3-236ENST00000568558 KLHL12Q53G59 568 aa12.28□□□□□ -0.44
CLN3-236ENST00000568558 GDPGP1Q6ZNW5 385 aa12.28□□□□□ -0.44
CLN3-236ENST00000568558 SLC36A1Q7Z2H8 476 aa12.28□□□□□ -0.44
CLN3-236ENST00000568558 FAM216BQ8N7L0 139 aa12.28□□□□□ -0.44
CLN3-236ENST00000568558 AQP11Q8NBQ7 271 aa12.28□□□□□ -0.44
CLN3-236ENST00000568558 OR2T33Q8NG76 320 aa12.28□□□□□ -0.44
CLN3-236ENST00000568558 LRTOMTQ8WZ04 291 aa12.28□□□□□ -0.44
CLN3-236ENST00000568558 C12orf43Q96C57 262 aaKnown RBP12.28□□□□□ -0.44
CLN3-236ENST00000568558 SEH1LQ96EE3 360 aa12.28□□□□□ -0.44
CLN3-236ENST00000568558 LRGUKQ96M69 825 aa12.28□□□□□ -0.44
CLN3-236ENST00000568558 DMRTB1Q96MA1 342 aa12.28□□□□□ -0.44
CLN3-236ENST00000568558 RBM4BQ9BQ04 359 aaKnown RBP12.28□□□□□ -0.44
CLN3-236ENST00000568558 TLNRD1Q9H1K6 362 aa12.28□□□□□ -0.44
CLN3-236ENST00000568558 SEMA6AQ9H2E6 1030 aa12.28□□□□□ -0.44
CLN3-236ENST00000568558 DPAGT1Q9H3H5 408 aa12.28□□□□□ -0.44
CLN3-236ENST00000568558 PPP1R3EQ9H7J1 279 aa12.28□□□□□ -0.44
CLN3-236ENST00000568558 SP140LQ9H930 580 aa12.28□□□□□ -0.44
CLN3-236ENST00000568558 ARMC1Q9NVT9 282 aa12.28□□□□□ -0.44
CLN3-236ENST00000568558 ZNRD1Q9P1U0 126 aa12.28□□□□□ -0.44
CLN3-236ENST00000568558 ONECUT1Q9UBC0 465 aa12.28□□□□□ -0.44
CLN3-236ENST00000568558 TET2Q6N021 2002 aaPredicted RBP12.28□□□□□ -0.44
CLN3-236ENST00000568558 GPR37O15354 613 aa12.27□□□□□ -0.45
CLN3-236ENST00000568558 IFNGP01579 166 aa12.27□□□□□ -0.45
CLN3-236ENST00000568558 AMY2BP19961 511 aa12.27□□□□□ -0.45
CLN3-236ENST00000568558 NAA10P41227 235 aaPredicted RBP12.27□□□□□ -0.45
CLN3-236ENST00000568558 GSK3AP49840 483 aa12.27□□□□□ -0.45
CLN3-236ENST00000568558 TAF9Q16594 264 aa12.27□□□□□ -0.45
CLN3-236ENST00000568558 FAM98BQ52LJ0 330 aaKnown RBP12.27□□□□□ -0.45
CLN3-236ENST00000568558 OR2T5Q6IEZ7 315 aa12.27□□□□□ -0.45
CLN3-236ENST00000568558 Q6ZSV7 163 aa12.27□□□□□ -0.45
CLN3-236ENST00000568558 FAM57BQ71RH2 274 aa12.27□□□□□ -0.45
CLN3-236ENST00000568558 ZSCAN4Q8NAM6 433 aaPredicted RBP12.27□□□□□ -0.45
CLN3-236ENST00000568558 OR52H1Q8NGJ2 320 aa12.27□□□□□ -0.45
CLN3-236ENST00000568558 OR6N2Q8NGY6 317 aa12.27□□□□□ -0.45
CLN3-236ENST00000568558 OR2T29Q8NH02 315 aa12.27□□□□□ -0.45
CLN3-236ENST00000568558 NPRL2Q8WTW4 380 aa12.27□□□□□ -0.45
CLN3-236ENST00000568558 CANT1Q8WVQ1 401 aa12.27□□□□□ -0.45
CLN3-236ENST00000568558 RNF133Q8WVZ7 376 aa12.27□□□□□ -0.45
CLN3-236ENST00000568558 ITPKCQ96DU7 683 aa12.27□□□□□ -0.45
CLN3-236ENST00000568558 ABHD6Q9BV23 337 aa12.27□□□□□ -0.45
CLN3-236ENST00000568558 CHID1Q9BWS9 393 aa12.27□□□□□ -0.45
CLN3-236ENST00000568558 DGCR6LQ9BY27 220 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms