RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 IFNA14P01570 189 aa13.04□□□□□ -0.32
CLK3-223ENST00000568488 COX7A1P24310 79 aa13.04□□□□□ -0.32
CLK3-223ENST00000568488 GZMMP51124 257 aa13.04□□□□□ -0.32
CLK3-223ENST00000568488 TRAM2Q15035 370 aa13.04□□□□□ -0.32
CLK3-223ENST00000568488 KHDC1LQ5JSQ8 128 aa13.04□□□□□ -0.32
CLK3-223ENST00000568488 ADCK1Q86TW2 530 aa13.04□□□□□ -0.32
CLK3-223ENST00000568488 RNF113BQ8IZP6 322 aaKnown RBP13.04□□□□□ -0.32
CLK3-223ENST00000568488 DPP10Q8N608 796 aa13.04□□□□□ -0.32
CLK3-223ENST00000568488 FAM156AQ8NDB6 213 aa13.04□□□□□ -0.32
CLK3-223ENST00000568488 MUC7Q8TAX7 377 aa13.04□□□□□ -0.32
CLK3-223ENST00000568488 SPTSSAQ969W0 71 aa13.04□□□□□ -0.32
CLK3-223ENST00000568488 GAFA1Q96PS6 74 aa13.04□□□□□ -0.32
CLK3-223ENST00000568488 HEXA-AS1Q9H8Q6 139 aa13.04□□□□□ -0.32
CLK3-223ENST00000568488 B9D1Q9UPM9 204 aa13.04□□□□□ -0.32
CLK3-223ENST00000568488 HUWE1Q7Z6Z7 4374 aaKnown RBP13.03□□□□□ -0.32
CLK3-223ENST00000568488 A0A087WUU8 490 aa13.03□□□□□ -0.32
CLK3-223ENST00000568488 A6NDX4 124 aa13.03□□□□□ -0.32
CLK3-223ENST00000568488 J3KTA2 159 aa13.03□□□□□ -0.32
CLK3-223ENST00000568488 NDUFB2O95178 105 aa13.03□□□□□ -0.32
CLK3-223ENST00000568488 HLA-DQA2P01906 255 aa13.03□□□□□ -0.32
CLK3-223ENST00000568488 ALDOBP05062 364 aa13.03□□□□□ -0.32
CLK3-223ENST00000568488 ANOS1P23352 680 aa13.03□□□□□ -0.32
CLK3-223ENST00000568488 GABRA2P47869 451 aa13.03□□□□□ -0.32
CLK3-223ENST00000568488 SLC36A3Q495N2 470 aa13.03□□□□□ -0.32
CLK3-223ENST00000568488 LRRC23Q53EV4 343 aaPredicted RBP13.03□□□□□ -0.32
CLK3-223ENST00000568488 CYBRD1Q53TN4 286 aa13.03□□□□□ -0.32
CLK3-223ENST00000568488 ZNF788Q6ZQV5 615 aa13.03□□□□□ -0.32
CLK3-223ENST00000568488 TMPRSS11FQ6ZWK6 438 aa13.03□□□□□ -0.32
CLK3-223ENST00000568488 RRM2BQ7LG56 351 aa13.03□□□□□ -0.32
CLK3-223ENST00000568488 LHFPL4Q7Z7J7 247 aa13.03□□□□□ -0.32
CLK3-223ENST00000568488 MYDGFQ969H8 173 aa13.03□□□□□ -0.32
CLK3-223ENST00000568488 CCDC28BQ9BUN5 200 aa13.03□□□□□ -0.32
CLK3-223ENST00000568488 DNTTIP1Q9H147 329 aa13.03□□□□□ -0.32
CLK3-223ENST00000568488 WDR13Q9H1Z4 485 aa13.03□□□□□ -0.32
CLK3-223ENST00000568488 PNRC2Q9NPJ4 139 aaKnown RBP13.03□□□□□ -0.32
CLK3-223ENST00000568488 NRIP3Q9NQ35 241 aa13.03□□□□□ -0.32
CLK3-223ENST00000568488 PITPNC1Q9UKF7 332 aa13.03□□□□□ -0.32
CLK3-223ENST00000568488 LYSTQ99698 3801 aa13.02□□□□□ -0.32
CLK3-223ENST00000568488 TNFAIP8L3Q5GJ75 292 aa13.02□□□□□ -0.33
CLK3-223ENST00000568488 TCTEX1D4Q5JR98 221 aa13.02□□□□□ -0.33
CLK3-223ENST00000568488 UNQ9370/PRO34162Q6UXP9 181 aa13.02□□□□□ -0.33
CLK3-223ENST00000568488 MBOAT2Q6ZWT7 520 aa13.02□□□□□ -0.33
CLK3-223ENST00000568488 CPLX4Q7Z7G2 160 aa13.02□□□□□ -0.33
CLK3-223ENST00000568488 DYNAPQ8N1N2 210 aa13.02□□□□□ -0.33
CLK3-223ENST00000568488 SLC26A10Q8NG04 563 aa13.02□□□□□ -0.33
CLK3-223ENST00000568488 RPS4Y2Q8TD47 263 aa13.02□□□□□ -0.33
CLK3-223ENST00000568488 TFAP2CQ92754 450 aa13.02□□□□□ -0.33
CLK3-223ENST00000568488 MAP6Q96JE9 813 aa13.02□□□□□ -0.33
CLK3-223ENST00000568488 CYB5R1Q9UHQ9 305 aa13.02□□□□□ -0.33
CLK3-223ENST00000568488 IGLV1-36A0A0B4J1U3 117 aa13.01□□□□□ -0.33
CLK3-223ENST00000568488 LCE6AA0A183 80 aa13.01□□□□□ -0.33
CLK3-223ENST00000568488 VGLL3A8MV65 326 aa13.01□□□□□ -0.33
CLK3-223ENST00000568488 ZFPL1O95159 310 aa13.01□□□□□ -0.33
CLK3-223ENST00000568488 TROVE2P10155 538 aaKnown RBP eCLIP13.01□□□□□ -0.33
CLK3-223ENST00000568488 RPS6KA3P51812 740 aa13.01□□□□□ -0.33
CLK3-223ENST00000568488 CAV3P56539 151 aa13.01□□□□□ -0.33
CLK3-223ENST00000568488 NKAPLQ5M9Q1 402 aa13.01□□□□□ -0.33
CLK3-223ENST00000568488 OFCC1Q8IZS5 231 aa13.01□□□□□ -0.33
CLK3-223ENST00000568488 OR6V1Q8N148 313 aa13.01□□□□□ -0.33
CLK3-223ENST00000568488 LINC00482Q8N8I6 264 aa13.01□□□□□ -0.33
CLK3-223ENST00000568488 TMEM185AQ8NFB2 350 aa13.01□□□□□ -0.33
CLK3-223ENST00000568488 FAM46AQ96IP4 442 aaKnown RBP13.01□□□□□ -0.33
CLK3-223ENST00000568488 RAB3IPQ96QF0 476 aaPredicted RBP13.01□□□□□ -0.33
CLK3-223ENST00000568488 RABEP2Q9H5N1 569 aa13.01□□□□□ -0.33
CLK3-223ENST00000568488 NKIRAS1Q9NYS0 192 aa13.01□□□□□ -0.33
CLK3-223ENST00000568488 SNX13Q9Y5W8 968 aa13.01□□□□□ -0.33
CLK3-223ENST00000568488 SIGLEC5O15389 551 aa13□□□□□ -0.33
CLK3-223ENST00000568488 AKR7A2O43488 359 aa13□□□□□ -0.33
CLK3-223ENST00000568488 PTP4A3O75365 173 aa13□□□□□ -0.33
CLK3-223ENST00000568488 TIPRLO75663 272 aa13□□□□□ -0.33
CLK3-223ENST00000568488 IFNW1P05000 195 aa13□□□□□ -0.33
CLK3-223ENST00000568488 ACAA1P09110 424 aaPredicted RBP13□□□□□ -0.33
CLK3-223ENST00000568488 SLC2A1P11166 492 aa13□□□□□ -0.33
CLK3-223ENST00000568488 GNALP38405 381 aa13□□□□□ -0.33
CLK3-223ENST00000568488 DDOSTP39656 456 aa13□□□□□ -0.33
CLK3-223ENST00000568488 PRKXP51817 358 aa13□□□□□ -0.33
CLK3-223ENST00000568488 ERVFRD-1P60508 538 aa13□□□□□ -0.33
CLK3-223ENST00000568488 DGCR2P98153 550 aa13□□□□□ -0.33
CLK3-223ENST00000568488 NANOGP8Q6NSW7 305 aa13□□□□□ -0.33
CLK3-223ENST00000568488 ZNRF1Q8ND25 227 aa13□□□□□ -0.33
CLK3-223ENST00000568488 ANGPTL6Q8NI99 470 aa13□□□□□ -0.33
CLK3-223ENST00000568488 PPP1R3EQ9H7J1 279 aa13□□□□□ -0.33
CLK3-223ENST00000568488 PALMDQ9NP74 551 aa13□□□□□ -0.33
CLK3-223ENST00000568488 SIGLEC7Q9Y286 467 aa13□□□□□ -0.33
CLK3-223ENST00000568488 FFAR1O14842 300 aa12.99□□□□□ -0.33
CLK3-223ENST00000568488 RENP00797 406 aa12.99□□□□□ -0.33
CLK3-223ENST00000568488 SLC7A2P52569 658 aa12.99□□□□□ -0.33
CLK3-223ENST00000568488 CAPZA1P52907 286 aa12.99□□□□□ -0.33
CLK3-223ENST00000568488 SSX2Q16385 188 aa12.99□□□□□ -0.33
CLK3-223ENST00000568488 DRAM2Q6UX65 266 aa12.99□□□□□ -0.33
CLK3-223ENST00000568488 MRPL41Q8IXM3 137 aaKnown RBP12.99□□□□□ -0.33
CLK3-223ENST00000568488 MREGQ8N565 214 aa12.99□□□□□ -0.33
CLK3-223ENST00000568488 RPL3LQ92901 407 aaKnown RBP12.99□□□□□ -0.33
CLK3-223ENST00000568488 ERMAPQ96PL5 475 aaPredicted RBP12.99□□□□□ -0.33
CLK3-223ENST00000568488 MCRIP2Q9BUT9 160 aaKnown RBP12.99□□□□□ -0.33
CLK3-223ENST00000568488 OPA3Q9H6K4 179 aa12.99□□□□□ -0.33
CLK3-223ENST00000568488 C19orf12Q9NSK7 152 aa12.99□□□□□ -0.33
CLK3-223ENST00000568488 ZMAT5Q9UDW3 170 aaKnown RBP12.99□□□□□ -0.33
CLK3-223ENST00000568488 TMEM5Q9Y2B1 443 aa12.99□□□□□ -0.33
CLK3-223ENST00000568488 TBX1O43435 398 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms