RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 CLN6Q9NWW5 311 aa12.57□□□□□ -0.4
VPS39-210ENST00000568357 WARS2Q9UGM6 360 aaKnown RBP12.57□□□□□ -0.4
VPS39-210ENST00000568357 OPN4Q9UHM6 478 aa12.57□□□□□ -0.4
VPS39-210ENST00000568357 IKZF2Q9UKS7 526 aa12.57□□□□□ -0.4
VPS39-210ENST00000568357 POLR3KQ9Y2Y1 108 aaPredicted RBP12.57□□□□□ -0.4
VPS39-210ENST00000568357 PPIAL4CA0A0B4J2A2 164 aa12.56□□□□□ -0.4
VPS39-210ENST00000568357 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.56□□□□□ -0.4
VPS39-210ENST00000568357 ZNF850A8MQ14 1090 aa12.56□□□□□ -0.4
VPS39-210ENST00000568357 J3QLI3 93 aa12.56□□□□□ -0.4
VPS39-210ENST00000568357 SRSF10O75494 262 aaKnown RBP12.56□□□□□ -0.4
VPS39-210ENST00000568357 APOL3O95236 402 aa12.56□□□□□ -0.4
VPS39-210ENST00000568357 CST4P01036 141 aa12.56□□□□□ -0.4
VPS39-210ENST00000568357 LHBP01229 141 aa12.56□□□□□ -0.4
VPS39-210ENST00000568357 ADRA2CP18825 462 aa12.56□□□□□ -0.4
VPS39-210ENST00000568357 RIDAP52758 137 aaKnown RBP12.56□□□□□ -0.4
VPS39-210ENST00000568357 MFGE8Q08431 387 aaPredicted RBP12.56□□□□□ -0.4
VPS39-210ENST00000568357 MZT1Q08AG7 82 aa12.56□□□□□ -0.4
VPS39-210ENST00000568357 PLEKHG7Q6ZR37 379 aa12.56□□□□□ -0.4
VPS39-210ENST00000568357 SSX6Q7RTT6 188 aa12.56□□□□□ -0.4
VPS39-210ENST00000568357 OR1M1Q8NGA1 313 aa12.56□□□□□ -0.4
VPS39-210ENST00000568357 ITPKCQ96DU7 683 aa12.56□□□□□ -0.4
VPS39-210ENST00000568357 HRASLS5Q96KN8 279 aa12.56□□□□□ -0.4
VPS39-210ENST00000568357 MNTQ99583 582 aa12.56□□□□□ -0.4
VPS39-210ENST00000568357 PAPOLGQ9BWT3 736 aaKnown RBP12.56□□□□□ -0.4
VPS39-210ENST00000568357 FGF23Q9GZV9 251 aaPredicted RBP12.56□□□□□ -0.4
VPS39-210ENST00000568357 MIOXQ9UGB7 285 aa12.56□□□□□ -0.4
VPS39-210ENST00000568357 MRM2Q9UI43 246 aaKnown RBP12.56□□□□□ -0.4
VPS39-210ENST00000568357 METRNQ9UJH8 293 aa12.56□□□□□ -0.4
VPS39-210ENST00000568357 A0A0U1RQV5 110 aa12.55□□□□□ -0.4
VPS39-210ENST00000568357 A6NLC8 198 aa12.55□□□□□ -0.4
VPS39-210ENST00000568357 A8MXK9 166 aa12.55□□□□□ -0.4
VPS39-210ENST00000568357 ZNF670-ZNF695F2Z2N8 137 aa12.55□□□□□ -0.4
VPS39-210ENST00000568357 C3orf80F5H4A9 247 aa12.55□□□□□ -0.4
VPS39-210ENST00000568357 TNFRSF13BO14836 293 aaPredicted RBP12.55□□□□□ -0.4
VPS39-210ENST00000568357 IGLV3-1P01715 115 aa12.55□□□□□ -0.4
VPS39-210ENST00000568357 RPS2P15880 293 aaKnown RBP12.55□□□□□ -0.4
VPS39-210ENST00000568357 GATA3P23771 443 aa12.55□□□□□ -0.4
VPS39-210ENST00000568357 CPT2P23786 658 aa12.55□□□□□ -0.4
VPS39-210ENST00000568357 GNALP38405 381 aa12.55□□□□□ -0.4
VPS39-210ENST00000568357 CDC42P60953 191 aa12.55□□□□□ -0.4
VPS39-210ENST00000568357 CSNK2BP67870 215 aa12.55□□□□□ -0.4
VPS39-210ENST00000568357 EGR3Q06889 387 aa12.55□□□□□ -0.4
VPS39-210ENST00000568357 PRDX4Q13162 271 aa12.55□□□□□ -0.4
VPS39-210ENST00000568357 ESCO2Q56NI9 601 aa12.55□□□□□ -0.4
VPS39-210ENST00000568357 PQLC1Q8N2U9 271 aa12.55□□□□□ -0.4
VPS39-210ENST00000568357 GALNT4Q8N4A0 578 aa12.55□□□□□ -0.4
VPS39-210ENST00000568357 GCSAMQ8N6F7 178 aa12.55□□□□□ -0.4
VPS39-210ENST00000568357 FAM81AQ8TBF8 368 aa12.55□□□□□ -0.4
VPS39-210ENST00000568357 OR51E1Q8TCB6 317 aa12.55□□□□□ -0.4
VPS39-210ENST00000568357 TRUB1Q8WWH5 349 aaKnown RBP12.55□□□□□ -0.4
VPS39-210ENST00000568357 OR5P3Q8WZ94 311 aa12.55□□□□□ -0.4
VPS39-210ENST00000568357 PIGCQ92535 297 aa12.55□□□□□ -0.4
VPS39-210ENST00000568357 MBOAT4Q96T53 435 aa12.55□□□□□ -0.4
VPS39-210ENST00000568357 TBX5Q99593 518 aa12.55□□□□□ -0.4
VPS39-210ENST00000568357 AASSQ9UDR5 926 aa12.55□□□□□ -0.4
VPS39-210ENST00000568357 ZNF391Q9UJN7 358 aa12.55□□□□□ -0.4
VPS39-210ENST00000568357 ORC6Q9Y5N6 252 aa12.55□□□□□ -0.4
VPS39-210ENST00000568357 MPC1Q9Y5U8 109 aa12.55□□□□□ -0.4
VPS39-210ENST00000568357 A0A1W2PQL4 384 aaPredicted RBP12.54□□□□□ -0.4
VPS39-210ENST00000568357 LGALS8O00214 317 aa12.54□□□□□ -0.4
VPS39-210ENST00000568357 PHYHO14832 338 aa12.54□□□□□ -0.4
VPS39-210ENST00000568357 KCNAB3O43448 404 aa12.54□□□□□ -0.4
VPS39-210ENST00000568357 ENTPD6O75354 484 aa12.54□□□□□ -0.4
VPS39-210ENST00000568357 TTRP02766 147 aa12.54□□□□□ -0.4
VPS39-210ENST00000568357 OR2T7P0C7T2 308 aa12.54□□□□□ -0.4
VPS39-210ENST00000568357 EGR1P18146 543 aa12.54□□□□□ -0.4
VPS39-210ENST00000568357 CD80P33681 288 aa12.54□□□□□ -0.4
VPS39-210ENST00000568357 PSMB10P40306 273 aa12.54□□□□□ -0.4
VPS39-210ENST00000568357 PAX2Q02962 417 aa12.54□□□□□ -0.4
VPS39-210ENST00000568357 POU4F2Q12837 409 aa12.54□□□□□ -0.4
VPS39-210ENST00000568357 ZNF154Q13106 437 aa12.54□□□□□ -0.4
VPS39-210ENST00000568357 TMED1Q13445 227 aa12.54□□□□□ -0.4
VPS39-210ENST00000568357 ZNF829Q3KNS6 432 aaPredicted RBP12.54□□□□□ -0.4
VPS39-210ENST00000568357 ZNF684Q5T5D7 378 aa12.54□□□□□ -0.4
VPS39-210ENST00000568357 ZNF841Q6ZN19 808 aa12.54□□□□□ -0.4
VPS39-210ENST00000568357 DCDC5Q6ZRR9 648 aa12.54□□□□□ -0.4
VPS39-210ENST00000568357 KRT74Q7RTS7 529 aa12.54□□□□□ -0.4
VPS39-210ENST00000568357 FTMTQ8N4E7 242 aa12.54□□□□□ -0.4
VPS39-210ENST00000568357 OR2T27Q8NH04 317 aa12.54□□□□□ -0.4
VPS39-210ENST00000568357 NEIL1Q96FI4 390 aaPredicted RBP12.54□□□□□ -0.4
VPS39-210ENST00000568357 FAM71F1Q96KD3 344 aaPredicted RBP12.54□□□□□ -0.4
VPS39-210ENST00000568357 C9orf16Q9BUW7 83 aa12.54□□□□□ -0.4
VPS39-210ENST00000568357 SSBP3Q9BWW4 388 aaPredicted RBP12.54□□□□□ -0.4
VPS39-210ENST00000568357 GPR84Q9NQS5 396 aa12.54□□□□□ -0.4
VPS39-210ENST00000568357 NUFIP1Q9UHK0 495 aaKnown RBP12.54□□□□□ -0.4
VPS39-210ENST00000568357 LRCH1Q9Y2L9 728 aa12.54□□□□□ -0.4
VPS39-210ENST00000568357 INSIG2Q9Y5U4 225 aa12.54□□□□□ -0.4
VPS39-210ENST00000568357 R4GMQ9 66 aa12.54□□□□□ -0.4
VPS39-210ENST00000568357 hCG_1807616A0A1W2PRN6 198 aa12.53□□□□□ -0.4
VPS39-210ENST00000568357 OOEPA6NGQ2 149 aa12.53□□□□□ -0.4
VPS39-210ENST00000568357 ANXA2P2A6NMY6 339 aa12.53□□□□□ -0.4
VPS39-210ENST00000568357 CDIPTO14735 213 aa12.53□□□□□ -0.4
VPS39-210ENST00000568357 BAG2O95816 211 aa12.53□□□□□ -0.4
VPS39-210ENST00000568357 ZNF12P17014 697 aa12.53□□□□□ -0.4
VPS39-210ENST00000568357 ATP6V1E1P36543 226 aa12.53□□□□□ -0.4
VPS39-210ENST00000568357 MAP2K3P46734 347 aa12.53□□□□□ -0.4
VPS39-210ENST00000568357 SNRPGP62308 76 aaKnown RBP12.53□□□□□ -0.4
VPS39-210ENST00000568357 IL5RAQ01344 420 aa12.53□□□□□ -0.4
VPS39-210ENST00000568357 SNCBQ16143 134 aa12.53□□□□□ -0.4
VPS39-210ENST00000568357 FAM76BQ5HYJ3 339 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms