RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 TMEM59Q9BXS4 323 aa17.74■□□□□ 0.43
CLN3-230ENST00000568076 CHST5Q9GZS9 411 aa17.74■□□□□ 0.43
CLN3-230ENST00000568076 PLA2G3Q9NZ20 509 aa17.74■□□□□ 0.43
CLN3-230ENST00000568076 PCDHGA1Q9Y5H4 931 aa17.74■□□□□ 0.43
CLN3-230ENST00000568076 U3KQ87 197 aa17.74■□□□□ 0.43
CLN3-230ENST00000568076 APOC1P02654 83 aa17.73■□□□□ 0.43
CLN3-230ENST00000568076 ITGA3P26006 1051 aa17.73■□□□□ 0.43
CLN3-230ENST00000568076 DHODHQ02127 395 aa17.73■□□□□ 0.43
CLN3-230ENST00000568076 MEF2DQ14814 521 aa17.73■□□□□ 0.43
CLN3-230ENST00000568076 CEACAM16Q2WEN9 425 aa17.73■□□□□ 0.43
CLN3-230ENST00000568076 RNASE10Q5GAN6 216 aaKnown RBP17.73■□□□□ 0.43
CLN3-230ENST00000568076 TMED4Q7Z7H5 227 aa17.73■□□□□ 0.43
CLN3-230ENST00000568076 SULF2Q8IWU5 870 aa17.73■□□□□ 0.43
CLN3-230ENST00000568076 FOXB1Q99853 325 aa17.73■□□□□ 0.43
CLN3-230ENST00000568076 SLC2A8Q9NY64 477 aa17.73■□□□□ 0.43
CLN3-230ENST00000568076 CRTAPO75718 401 aaPredicted RBP17.73■□□□□ 0.43
CLN3-230ENST00000568076 ALX3O95076 343 aa17.73■□□□□ 0.43
CLN3-230ENST00000568076 TNFSF15O95150 251 aa17.73■□□□□ 0.43
CLN3-230ENST00000568076 MPC2O95563 127 aa17.73■□□□□ 0.43
CLN3-230ENST00000568076 ZNF32P17041 273 aa17.73■□□□□ 0.43
CLN3-230ENST00000568076 HOXD11P31277 338 aaPredicted RBP17.73■□□□□ 0.43
CLN3-230ENST00000568076 PTGFRP43088 359 aa17.73■□□□□ 0.43
CLN3-230ENST00000568076 LHX2P50458 406 aa17.73■□□□□ 0.43
CLN3-230ENST00000568076 OR1C1Q15619 314 aa17.73■□□□□ 0.43
CLN3-230ENST00000568076 DCAF12L2Q5VW00 463 aa17.73■□□□□ 0.43
CLN3-230ENST00000568076 PLXDC2Q6UX71 529 aa17.73■□□□□ 0.43
CLN3-230ENST00000568076 C17orf107Q6ZR85 190 aa17.73■□□□□ 0.43
CLN3-230ENST00000568076 FGFBP3Q8TAT2 258 aa17.73■□□□□ 0.43
CLN3-230ENST00000568076 PP6455Q8WZ26 134 aa17.73■□□□□ 0.43
CLN3-230ENST00000568076 CDC6Q99741 560 aa17.73■□□□□ 0.43
CLN3-230ENST00000568076 OPN4Q9UHM6 478 aa17.73■□□□□ 0.43
CLN3-230ENST00000568076 VSIG4Q9Y279 399 aa17.73■□□□□ 0.43
CLN3-230ENST00000568076 PLSCR5A0PG75 271 aa17.72■□□□□ 0.43
CLN3-230ENST00000568076 DISC1C4P0D8 188 aa17.72■□□□□ 0.43
CLN3-230ENST00000568076 GOSR2O14653 212 aa17.72■□□□□ 0.43
CLN3-230ENST00000568076 RAD51DO75771 328 aa17.72■□□□□ 0.43
CLN3-230ENST00000568076 HPNP05981 417 aa17.72■□□□□ 0.43
CLN3-230ENST00000568076 NAT2P11245 290 aa17.72■□□□□ 0.43
CLN3-230ENST00000568076 HIST1H1DP16402 221 aaKnown RBP17.72■□□□□ 0.43
CLN3-230ENST00000568076 ACKR3P25106 362 aa17.72■□□□□ 0.43
CLN3-230ENST00000568076 MPZP25189 248 aa17.72■□□□□ 0.43
CLN3-230ENST00000568076 HRH1P35367 487 aa17.72■□□□□ 0.43
CLN3-230ENST00000568076 RIPPLY2Q5TAB7 128 aa17.72■□□□□ 0.43
CLN3-230ENST00000568076 DRAM2Q6UX65 266 aa17.72■□□□□ 0.43
CLN3-230ENST00000568076 LINC00696Q6ZRV3 163 aa17.72■□□□□ 0.43
CLN3-230ENST00000568076 OR2AE1Q8NHA4 323 aa17.72■□□□□ 0.43
CLN3-230ENST00000568076 OR1F12Q8NHA8 337 aa17.72■□□□□ 0.43
CLN3-230ENST00000568076 AKR7LQ8NHP1 331 aa17.72■□□□□ 0.43
CLN3-230ENST00000568076 CCDC107Q8WV48 283 aa17.72■□□□□ 0.43
CLN3-230ENST00000568076 TNFAIP8L1Q8WVP5 186 aa17.72■□□□□ 0.43
CLN3-230ENST00000568076 RAB3CQ96E17 227 aa17.72■□□□□ 0.43
CLN3-230ENST00000568076 RADILQ96JH8 1075 aa17.72■□□□□ 0.43
CLN3-230ENST00000568076 OR10A2Q9H208 303 aa17.72■□□□□ 0.43
CLN3-230ENST00000568076 GPR35Q9HC97 309 aa17.72■□□□□ 0.43
CLN3-230ENST00000568076 MYOZ1Q9NP98 299 aaPredicted RBP17.72■□□□□ 0.43
CLN3-230ENST00000568076 TMEM9BQ9NQ34 198 aa17.72■□□□□ 0.43
CLN3-230ENST00000568076 IFT46Q9NQC8 304 aa17.72■□□□□ 0.43
CLN3-230ENST00000568076 OR6C6A6NF89 314 aa17.71■□□□□ 0.43
CLN3-230ENST00000568076 STMND1H3BQB6 276 aa17.71■□□□□ 0.43
CLN3-230ENST00000568076 H3BUI4 141 aa17.71■□□□□ 0.43
CLN3-230ENST00000568076 UBBP0CG47 229 aa17.71■□□□□ 0.43
CLN3-230ENST00000568076 ZNF35P13682 527 aa17.71■□□□□ 0.43
CLN3-230ENST00000568076 CXADRP78310 365 aa17.71■□□□□ 0.43
CLN3-230ENST00000568076 KRTAP27-1Q3LI81 207 aa17.71■□□□□ 0.43
CLN3-230ENST00000568076 ZNF680Q8NEM1 530 aa17.71■□□□□ 0.43
CLN3-230ENST00000568076 OR52H1Q8NGJ2 320 aa17.71■□□□□ 0.43
CLN3-230ENST00000568076 MTRF1O75570 445 aaKnown RBP17.71■□□□□ 0.43
CLN3-230ENST00000568076 ALDH3B1P43353 468 aa17.71■□□□□ 0.43
CLN3-230ENST00000568076 PSG4Q00888 419 aa17.71■□□□□ 0.43
CLN3-230ENST00000568076 SRYQ05066 204 aa17.71■□□□□ 0.43
CLN3-230ENST00000568076 SCRN3Q0VDG4 424 aa17.71■□□□□ 0.43
CLN3-230ENST00000568076 FAM109AQ8N4B1 249 aa17.71■□□□□ 0.43
CLN3-230ENST00000568076 PNLDC1Q8NA58 520 aaKnown RBP17.71■□□□□ 0.43
CLN3-230ENST00000568076 PRRT1Q99946 306 aa17.71■□□□□ 0.43
CLN3-230ENST00000568076 DPCDQ9BVM2 203 aaPredicted RBP17.71■□□□□ 0.43
CLN3-230ENST00000568076 TTTY12Q9BZ98 90 aa17.71■□□□□ 0.43
CLN3-230ENST00000568076 ANAPC10Q9UM13 185 aa17.71■□□□□ 0.43
CLN3-230ENST00000568076 FAM166BA8MTA8 275 aa17.7■□□□□ 0.42
CLN3-230ENST00000568076 GSTP1P09211 210 aaKnown RBP17.7■□□□□ 0.42
CLN3-230ENST00000568076 FCGR2AP12318 317 aa17.7■□□□□ 0.42
CLN3-230ENST00000568076 CXCL2P19875 107 aa17.7■□□□□ 0.42
CLN3-230ENST00000568076 MAGEA5P43359 124 aa17.7■□□□□ 0.42
CLN3-230ENST00000568076 CLDN18P56856 261 aa17.7■□□□□ 0.42
CLN3-230ENST00000568076 GNG2P59768 71 aa17.7■□□□□ 0.42
CLN3-230ENST00000568076 RPS27AP62979 156 aaKnown RBP17.7■□□□□ 0.42
CLN3-230ENST00000568076 FAM89BQ8N5H3 189 aa17.7■□□□□ 0.42
CLN3-230ENST00000568076 OR10K1Q8NGX5 313 aa17.7■□□□□ 0.42
CLN3-230ENST00000568076 HAS2Q92819 552 aa17.7■□□□□ 0.42
CLN3-230ENST00000568076 PIGTQ969N2 578 aa17.7■□□□□ 0.42
CLN3-230ENST00000568076 C10orf35Q96D05 121 aa17.7■□□□□ 0.42
CLN3-230ENST00000568076 ARHGAP5-AS1Q96IT6 56 aa17.7■□□□□ 0.42
CLN3-230ENST00000568076 WNT5BQ9H1J7 359 aa17.7■□□□□ 0.42
CLN3-230ENST00000568076 LOC100509620A0A075B734 347 aa17.7■□□□□ 0.42
CLN3-230ENST00000568076 LINC01387J3KSC0 135 aa17.7■□□□□ 0.42
CLN3-230ENST00000568076 MFNGO00587 321 aa17.7■□□□□ 0.42
CLN3-230ENST00000568076 PRSS12P56730 875 aa17.7■□□□□ 0.42
CLN3-230ENST00000568076 AIMP2Q13155 320 aaKnown RBP17.7■□□□□ 0.42
CLN3-230ENST00000568076 GRK1Q15835 563 aa17.7■□□□□ 0.42
CLN3-230ENST00000568076 PDSS1Q5T2R2 415 aa17.7■□□□□ 0.42
CLN3-230ENST00000568076 SKA3Q8IX90 412 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms