RNA–Protein interactions for RNA: ENST00000567320.1

CDH1-211, Transcript of cadherin 1, humanhuman

TSL 3

Gene CDH1, Length 352 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-211ENST00000567320 CPNE9Q8IYJ1 553 aa0.48□□□□□ -2.33
CDH1-211ENST00000567320 ZFP62Q8NB50 900 aaPredicted RBP0.48□□□□□ -2.33
CDH1-211ENST00000567320 OR52M1Q8NGK5 317 aa0.48□□□□□ -2.33
CDH1-211ENST00000567320 CAPSLQ8WWF8 208 aa0.48□□□□□ -2.33
CDH1-211ENST00000567320 TUBGCP3Q96CW5 907 aa0.48□□□□□ -2.33
CDH1-211ENST00000567320 FXYD5Q96DB9 178 aa0.48□□□□□ -2.33
CDH1-211ENST00000567320 NEUROG2Q9H2A3 272 aa0.48□□□□□ -2.33
CDH1-211ENST00000567320 CYP3A43Q9HB55 503 aa0.48□□□□□ -2.33
CDH1-211ENST00000567320 CA10Q9NS85 328 aa0.48□□□□□ -2.33
CDH1-211ENST00000567320 RBFOX1Q9NWB1 397 aaKnown RBP0.48□□□□□ -2.33
CDH1-211ENST00000567320 MRPL16Q9NX20 251 aaKnown RBP0.48□□□□□ -2.33
CDH1-211ENST00000567320 BAZ1BQ9UIG0 1483 aaKnown RBP0.48□□□□□ -2.33
CDH1-211ENST00000567320 FHOD3Q2V2M9 1422 aa0.47□□□□□ -2.33
CDH1-211ENST00000567320 COL4A1P02462 1669 aa0.47□□□□□ -2.33
CDH1-211ENST00000567320 CDH16O75309 829 aa0.47□□□□□ -2.33
CDH1-211ENST00000567320 IGHV3-53P01767 116 aa0.47□□□□□ -2.33
CDH1-211ENST00000567320 MX1P20591 662 aa0.47□□□□□ -2.33
CDH1-211ENST00000567320 GLRA2P23416 452 aa0.47□□□□□ -2.33
CDH1-211ENST00000567320 APLNRP35414 380 aa0.47□□□□□ -2.33
CDH1-211ENST00000567320 ACLYP53396 1101 aa0.47□□□□□ -2.33
CDH1-211ENST00000567320 LIPEQ05469 1076 aa0.47□□□□□ -2.33
CDH1-211ENST00000567320 IL24Q13007 206 aa0.47□□□□□ -2.33
CDH1-211ENST00000567320 C6orf99Q4VX62 202 aa0.47□□□□□ -2.33
CDH1-211ENST00000567320 GCSAMLQ5JQS6 135 aa0.47□□□□□ -2.33
CDH1-211ENST00000567320 RNASEKQ6P5S7 137 aaKnown RBP0.47□□□□□ -2.33
CDH1-211ENST00000567320 CMC1Q7Z7K0 106 aa0.47□□□□□ -2.33
CDH1-211ENST00000567320 YIPF6Q96EC8 236 aa0.47□□□□□ -2.33
CDH1-211ENST00000567320 UQCC2Q9BRT2 126 aa0.47□□□□□ -2.33
CDH1-211ENST00000567320 TTTY12Q9BZ98 90 aa0.47□□□□□ -2.33
CDH1-211ENST00000567320 BEX1Q9HBH7 125 aa0.47□□□□□ -2.33
CDH1-211ENST00000567320 CCDC59Q9P031 241 aaKnown RBP0.47□□□□□ -2.33
CDH1-211ENST00000567320 STX18Q9P2W9 335 aaKnown RBP0.47□□□□□ -2.33
CDH1-211ENST00000567320 USP47Q96K76 1375 aa0.46□□□□□ -2.34
CDH1-211ENST00000567320 MED13Q9UHV7 2174 aa0.46□□□□□ -2.34
CDH1-211ENST00000567320 GBF1Q92538 1859 aa0.46□□□□□ -2.34
CDH1-211ENST00000567320 IGKV1OR2-108A0A075B7D4 117 aa0.46□□□□□ -2.34
CDH1-211ENST00000567320 CCL15-CCL14A0A0B4J2E2 113 aa0.46□□□□□ -2.34
CDH1-211ENST00000567320 SCAMP2O15127 329 aaKnown RBP0.46□□□□□ -2.34
CDH1-211ENST00000567320 RAD1O60671 282 aa0.46□□□□□ -2.34
CDH1-211ENST00000567320 SLC19A2O60779 497 aa0.46□□□□□ -2.34
CDH1-211ENST00000567320 AQP8O94778 261 aa0.46□□□□□ -2.34
CDH1-211ENST00000567320 FARS2O95363 451 aaKnown RBP0.46□□□□□ -2.34
CDH1-211ENST00000567320 PGA4P0DJD7 388 aa0.46□□□□□ -2.34
CDH1-211ENST00000567320 PGA3P0DJD8 388 aa0.46□□□□□ -2.34
CDH1-211ENST00000567320 PGA5P0DJD9 388 aa0.46□□□□□ -2.34
CDH1-211ENST00000567320 LYNX1P0DP58 116 aa0.46□□□□□ -2.34
CDH1-211ENST00000567320 ZNF24P17028 368 aa0.46□□□□□ -2.34
CDH1-211ENST00000567320 OR1E1P30953 314 aa0.46□□□□□ -2.34
CDH1-211ENST00000567320 SLC1A1P43005 524 aa0.46□□□□□ -2.34
CDH1-211ENST00000567320 BST1Q10588 318 aa0.46□□□□□ -2.34
CDH1-211ENST00000567320 CCL15Q16663 113 aa0.46□□□□□ -2.34
CDH1-211ENST00000567320 MFSD14CQ5VZR4 134 aa0.46□□□□□ -2.34
CDH1-211ENST00000567320 IQCKQ8N0W5 287 aa0.46□□□□□ -2.34
CDH1-211ENST00000567320 BPIFCQ8NFQ6 507 aa0.46□□□□□ -2.34
CDH1-211ENST00000567320 DYNLL2Q96FJ2 89 aa0.46□□□□□ -2.34
CDH1-211ENST00000567320 SND1-IT1Q9HBX3 110 aa0.46□□□□□ -2.34
CDH1-211ENST00000567320 AGPAT4Q9NRZ5 378 aa0.46□□□□□ -2.34
CDH1-211ENST00000567320 PISDQ9UG56 409 aa0.46□□□□□ -2.34
CDH1-211ENST00000567320 ISY1Q9ULR0 285 aaKnown RBP0.46□□□□□ -2.34
CDH1-211ENST00000567320 TRAPPC1Q9Y5R8 145 aa0.46□□□□□ -2.34
CDH1-211ENST00000567320 AKNAQ7Z591 1439 aa0.46□□□□□ -2.34
CDH1-211ENST00000567320 SLC31A1O15431 190 aa0.45□□□□□ -2.34
CDH1-211ENST00000567320 USF1P22415 310 aaPredicted RBP0.45□□□□□ -2.34
CDH1-211ENST00000567320 RGS6P49758 472 aa0.45□□□□□ -2.34
CDH1-211ENST00000567320 TRAM2Q15035 370 aa0.45□□□□□ -2.34
CDH1-211ENST00000567320 KLHL40Q2TBA0 621 aa0.45□□□□□ -2.34
CDH1-211ENST00000567320 MRPL2Q5T653 305 aaKnown RBP0.45□□□□□ -2.34
CDH1-211ENST00000567320 N4BP2L1Q5TBK1 243 aaPredicted RBP0.45□□□□□ -2.34
CDH1-211ENST00000567320 METAP1DQ6UB28 335 aaPredicted RBP0.45□□□□□ -2.34
CDH1-211ENST00000567320 CERS6Q6ZMG9 384 aa0.45□□□□□ -2.34
CDH1-211ENST00000567320 TMEM144Q7Z5S9 345 aa0.45□□□□□ -2.34
CDH1-211ENST00000567320 NBPF5PQ86XG9 351 aaPredicted RBP0.45□□□□□ -2.34
CDH1-211ENST00000567320 LYPD6Q86Y78 171 aa0.45□□□□□ -2.34
CDH1-211ENST00000567320 MSRB3Q8IXL7 192 aa0.45□□□□□ -2.34
CDH1-211ENST00000567320 ITLN2Q8WWU7 325 aaPredicted RBP0.45□□□□□ -2.34
CDH1-211ENST00000567320 ZNF625Q96I27 306 aaPredicted RBP0.45□□□□□ -2.34
CDH1-211ENST00000567320 BTN2A3PQ96KV6 586 aa0.45□□□□□ -2.34
CDH1-211ENST00000567320 PEBP4Q96S96 227 aa0.45□□□□□ -2.34
CDH1-211ENST00000567320 RACGAP1Q9H0H5 632 aa0.45□□□□□ -2.34
CDH1-211ENST00000567320 TMEM38AQ9H6F2 299 aa0.45□□□□□ -2.34
CDH1-211ENST00000567320 FAM60AQ9NP50 221 aa0.45□□□□□ -2.34
CDH1-211ENST00000567320 ICOSQ9Y6W8 199 aa0.45□□□□□ -2.34
CDH1-211ENST00000567320 A0A0A6YYD5 115 aa0.44□□□□□ -2.34
CDH1-211ENST00000567320 SLC9A3R1O14745 358 aaPredicted RBP0.44□□□□□ -2.34
CDH1-211ENST00000567320 OR2J3O76001 311 aa0.44□□□□□ -2.34
CDH1-211ENST00000567320 TRBV12-3P01733 135 aa0.44□□□□□ -2.34
CDH1-211ENST00000567320 MYL9P24844 172 aa0.44□□□□□ -2.34
CDH1-211ENST00000567320 PFN2P35080 140 aa0.44□□□□□ -2.34
CDH1-211ENST00000567320 PPICP45877 212 aa0.44□□□□□ -2.34
CDH1-211ENST00000567320 ZNF121P58317 390 aaPredicted RBP0.44□□□□□ -2.34
CDH1-211ENST00000567320 GPM6BQ13491 265 aa0.44□□□□□ -2.34
CDH1-211ENST00000567320 MRPL23Q16540 153 aaKnown RBP0.44□□□□□ -2.34
CDH1-211ENST00000567320 HSP90AB3PQ58FF7 597 aa0.44□□□□□ -2.34
CDH1-211ENST00000567320 PRAMEF5Q5TYX0 476 aa0.44□□□□□ -2.34
CDH1-211ENST00000567320 HHATQ5VTY9 493 aa0.44□□□□□ -2.34
CDH1-211ENST00000567320 PRAMEF6Q5VXH4 476 aa0.44□□□□□ -2.34
CDH1-211ENST00000567320 SLC8B1Q6J4K2 584 aa0.44□□□□□ -2.34
CDH1-211ENST00000567320 REEP3Q6NUK4 255 aa0.44□□□□□ -2.34
CDH1-211ENST00000567320 TMEM107Q6UX40 140 aa0.44□□□□□ -2.34
CDH1-211ENST00000567320 SGTBQ96EQ0 304 aa0.44□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms