RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 QRFPP83859 136 aa11.74□□□□□ -0.53
VPS4A-204ENST00000566354 OR52W1Q6IF63 320 aa11.74□□□□□ -0.53
VPS4A-204ENST00000566354 SLC29A4Q7RTT9 530 aa11.74□□□□□ -0.53
VPS4A-204ENST00000566354 SLC22A24Q8N4F4 322 aa11.74□□□□□ -0.53
VPS4A-204ENST00000566354 DEFB124Q8NES8 71 aa11.74□□□□□ -0.53
VPS4A-204ENST00000566354 CMBLQ96DG6 245 aa11.74□□□□□ -0.53
VPS4A-204ENST00000566354 NUDT16L1Q9BRJ7 211 aaKnown RBP11.74□□□□□ -0.53
VPS4A-204ENST00000566354 ZPBPQ9BS86 351 aa11.74□□□□□ -0.53
VPS4A-204ENST00000566354 COPS7AQ9UBW8 275 aa11.74□□□□□ -0.53
VPS4A-204ENST00000566354 LOXL2Q9Y4K0 774 aa11.74□□□□□ -0.53
VPS4A-204ENST00000566354 AHCTF1Q8WYP5 2266 aa11.73□□□□□ -0.53
VPS4A-204ENST00000566354 MS4A18H0YCH9 400 aa11.73□□□□□ -0.53
VPS4A-204ENST00000566354 ZNF208O43345 1280 aa11.73□□□□□ -0.53
VPS4A-204ENST00000566354 PSMB6P28072 239 aa11.73□□□□□ -0.53
VPS4A-204ENST00000566354 HRH1P35367 487 aa11.73□□□□□ -0.53
VPS4A-204ENST00000566354 DAP3P51398 398 aaKnown RBP11.73□□□□□ -0.53
VPS4A-204ENST00000566354 ZP4Q12836 540 aa11.73□□□□□ -0.53
VPS4A-204ENST00000566354 UNC119Q13432 240 aa11.73□□□□□ -0.53
VPS4A-204ENST00000566354 MS4A18Q3C1V0 323 aa11.73□□□□□ -0.53
VPS4A-204ENST00000566354 KRBOX4Q5JUW0 171 aa11.73□□□□□ -0.53
VPS4A-204ENST00000566354 CDCP2Q5VXM1 449 aa11.73□□□□□ -0.53
VPS4A-204ENST00000566354 KCTD9Q7L273 389 aa11.73□□□□□ -0.53
VPS4A-204ENST00000566354 LINC00346Q8IVM7 164 aa11.73□□□□□ -0.53
VPS4A-204ENST00000566354 KDM8Q8N371 416 aa11.73□□□□□ -0.53
VPS4A-204ENST00000566354 OR5AP2Q8NGF4 316 aa11.73□□□□□ -0.53
VPS4A-204ENST00000566354 OR1S2Q8NGQ3 325 aa11.73□□□□□ -0.53
VPS4A-204ENST00000566354 STOML3Q8TAV4 291 aa11.73□□□□□ -0.53
VPS4A-204ENST00000566354 STT3BQ8TCJ2 826 aa11.73□□□□□ -0.53
VPS4A-204ENST00000566354 CASTOR1Q8WTX7 329 aa11.73□□□□□ -0.53
VPS4A-204ENST00000566354 RNF133Q8WVZ7 376 aa11.73□□□□□ -0.53
VPS4A-204ENST00000566354 VN1R1Q9GZP7 353 aa11.73□□□□□ -0.53
VPS4A-204ENST00000566354 CENPMQ9NSP4 180 aa11.73□□□□□ -0.53
VPS4A-204ENST00000566354 TMEM218A2RU14 115 aa11.72□□□□□ -0.53
VPS4A-204ENST00000566354 EEF1E1-BLOC1S5C9J1V9 151 aa11.72□□□□□ -0.53
VPS4A-204ENST00000566354 NPIPA5E9PKD4 350 aa11.72□□□□□ -0.53
VPS4A-204ENST00000566354 FGF16O43320 207 aa11.72□□□□□ -0.53
VPS4A-204ENST00000566354 CRHP06850 196 aa11.72□□□□□ -0.53
VPS4A-204ENST00000566354 VSIG8P0DPA2 414 aa11.72□□□□□ -0.53
VPS4A-204ENST00000566354 AKR1C4P17516 323 aa11.72□□□□□ -0.53
VPS4A-204ENST00000566354 GNALP38405 381 aa11.72□□□□□ -0.53
VPS4A-204ENST00000566354 TAS2R31P59538 309 aa11.72□□□□□ -0.53
VPS4A-204ENST00000566354 DCDP81605 110 aaKnown RBP11.72□□□□□ -0.53
VPS4A-204ENST00000566354 CYCSP99999 105 aaKnown RBP11.72□□□□□ -0.53
VPS4A-204ENST00000566354 PPA1Q15181 289 aa11.72□□□□□ -0.53
VPS4A-204ENST00000566354 NSDHLQ15738 373 aa11.72□□□□□ -0.53
VPS4A-204ENST00000566354 OR1M1Q8NGA1 313 aa11.72□□□□□ -0.53
VPS4A-204ENST00000566354 OR52N4Q8NGI2 321 aa11.72□□□□□ -0.53
VPS4A-204ENST00000566354 NUDCD2Q8WVJ2 157 aa11.72□□□□□ -0.53
VPS4A-204ENST00000566354 ASB10Q8WXI3 467 aa11.72□□□□□ -0.53
VPS4A-204ENST00000566354 TMEM234Q8WY98 164 aa11.72□□□□□ -0.53
VPS4A-204ENST00000566354 PIK3IP1Q96FE7 263 aa11.72□□□□□ -0.53
VPS4A-204ENST00000566354 MESP1Q9BRJ9 268 aa11.72□□□□□ -0.53
VPS4A-204ENST00000566354 CHMP1AQ9HD42 196 aaPredicted RBP11.72□□□□□ -0.53
VPS4A-204ENST00000566354 FBLN5Q9UBX5 448 aa11.72□□□□□ -0.53
VPS4A-204ENST00000566354 NPIPA1Q9UND3 350 aa11.72□□□□□ -0.53
VPS4A-204ENST00000566354 B3GALT1Q9Y5Z6 326 aa11.72□□□□□ -0.53
VPS4A-204ENST00000566354 PCNX3Q9H6A9 2034 aa11.72□□□□□ -0.53
VPS4A-204ENST00000566354 TRBV6-7A0A0A0MS04 114 aa11.72□□□□□ -0.53
VPS4A-204ENST00000566354 A0A1W2PNU3 283 aaPredicted RBP11.72□□□□□ -0.53
VPS4A-204ENST00000566354 F8VVB4 439 aa11.72□□□□□ -0.53
VPS4A-204ENST00000566354 F8VWA3 439 aa11.72□□□□□ -0.53
VPS4A-204ENST00000566354 PRF1P14222 555 aa11.72□□□□□ -0.53
VPS4A-204ENST00000566354 FMODQ06828 376 aa11.72□□□□□ -0.53
VPS4A-204ENST00000566354 RAB11FIP2Q7L804 512 aa11.72□□□□□ -0.53
VPS4A-204ENST00000566354 SVBPQ8N300 66 aa11.72□□□□□ -0.53
VPS4A-204ENST00000566354 GTPBP8Q8N3Z3 284 aaPredicted RBP11.72□□□□□ -0.53
VPS4A-204ENST00000566354 ADAD2Q8NCV1 583 aaKnown RBP11.72□□□□□ -0.53
VPS4A-204ENST00000566354 OR4K17Q8NGC6 315 aa11.72□□□□□ -0.53
VPS4A-204ENST00000566354 OR5D14Q8NGL3 314 aa11.72□□□□□ -0.53
VPS4A-204ENST00000566354 OR1N1Q8NGS0 311 aa11.72□□□□□ -0.53
VPS4A-204ENST00000566354 ELP5Q8TE02 316 aa11.72□□□□□ -0.53
VPS4A-204ENST00000566354 KCNK17Q96T54 332 aa11.72□□□□□ -0.53
VPS4A-204ENST00000566354 TSNAXQ99598 290 aaKnown RBP11.72□□□□□ -0.53
VPS4A-204ENST00000566354 TCEAL7Q9BRU2 100 aa11.72□□□□□ -0.53
VPS4A-204ENST00000566354 FAM206AQ9NX38 181 aa11.72□□□□□ -0.53
VPS4A-204ENST00000566354 SLC5A6Q9Y289 635 aa11.72□□□□□ -0.53
VPS4A-204ENST00000566354 IGLV3-12A0A075B6K2 115 aa11.71□□□□□ -0.53
VPS4A-204ENST00000566354 TEX13DA0A0J9YY54 714 aaPredicted RBP11.71□□□□□ -0.53
VPS4A-204ENST00000566354 C5orf51A6NDU8 294 aa11.71□□□□□ -0.53
VPS4A-204ENST00000566354 NPIPB13A6NJU9 1138 aa11.71□□□□□ -0.53
VPS4A-204ENST00000566354 ZNF729A6NN14 1252 aaPredicted RBP11.71□□□□□ -0.53
VPS4A-204ENST00000566354 B4E171 279 aa11.71□□□□□ -0.53
VPS4A-204ENST00000566354 NPIPB4C9JG80 1138 aa11.71□□□□□ -0.53
VPS4A-204ENST00000566354 MT-CO3P00414 261 aa11.71□□□□□ -0.53
VPS4A-204ENST00000566354 TPT1P13693 172 aaKnown RBP11.71□□□□□ -0.53
VPS4A-204ENST00000566354 RPL35P42766 123 aaKnown RBP11.71□□□□□ -0.53
VPS4A-204ENST00000566354 CX3CR1P49238 355 aa11.71□□□□□ -0.53
VPS4A-204ENST00000566354 AKR1D1P51857 326 aa11.71□□□□□ -0.53
VPS4A-204ENST00000566354 NAAAQ02083 359 aa11.71□□□□□ -0.53
VPS4A-204ENST00000566354 AARDQ4LEZ3 155 aa11.71□□□□□ -0.53
VPS4A-204ENST00000566354 SLC22A6Q4U2R8 563 aa11.71□□□□□ -0.53
VPS4A-204ENST00000566354 HES3Q5TGS1 186 aa11.71□□□□□ -0.53
VPS4A-204ENST00000566354 KLHL24Q6TFL4 600 aa11.71□□□□□ -0.53
VPS4A-204ENST00000566354 UNQ6126/PRO20091Q6UXV3 157 aa11.71□□□□□ -0.53
VPS4A-204ENST00000566354 LANCL3Q6ZV70 420 aa11.71□□□□□ -0.53
VPS4A-204ENST00000566354 H1FNTQ75WM6 255 aaPredicted RBP11.71□□□□□ -0.53
VPS4A-204ENST00000566354 OR10R2Q8NGX6 335 aa11.71□□□□□ -0.53
VPS4A-204ENST00000566354 NMES1Q9C002 83 aa11.71□□□□□ -0.53
VPS4A-204ENST00000566354 STRADBQ9C0K7 418 aa11.71□□□□□ -0.53
VPS4A-204ENST00000566354 ASF1BQ9NVP2 202 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms