RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 TMEM178BH3BS89 294 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP7.74□□□□□ -1.17
VPS35-206ENST00000565228 NDUFS8O00217 210 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 TNFRSF13BO14836 293 aaPredicted RBP7.74□□□□□ -1.17
VPS35-206ENST00000565228 PPIHO43447 177 aaKnown RBP7.74□□□□□ -1.17
VPS35-206ENST00000565228 ZNF254O75437 659 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 HEXAP06865 529 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 CSF3P09919 207 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 DUX4L2P0CJ85 424 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 DUX4L3P0CJ86 424 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 DUX4L4P0CJ87 422 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 DUX4L5P0CJ88 424 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 DUX4L6P0CJ89 424 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 DUX4L7P0CJ90 424 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 FAHP16930 419 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 ZNF16P17020 682 aaPredicted RBP7.74□□□□□ -1.17
VPS35-206ENST00000565228 AMY2BP19961 511 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 LIPAP38571 399 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 GATA4P43694 442 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 GPR6P46095 362 aaPredicted RBP7.74□□□□□ -1.17
VPS35-206ENST00000565228 GTF2A1P52655 376 aaPredicted RBP7.74□□□□□ -1.17
VPS35-206ENST00000565228 RIDAP52758 137 aaKnown RBP7.74□□□□□ -1.17
VPS35-206ENST00000565228 MALLQ13021 153 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 TIGD6Q17RP2 521 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 OR2G6Q5TZ20 316 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 ASPHD2Q6ICH7 369 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 KCTD18Q6PI47 426 aaPredicted RBP7.74□□□□□ -1.17
VPS35-206ENST00000565228 DUX4L9Q6RFH8 374 aaPredicted RBP7.74□□□□□ -1.17
VPS35-206ENST00000565228 LYPD2Q6UXB3 125 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 UNQ6126/PRO20091Q6UXV3 157 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 FGFRL1Q8N441 504 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 YIPF7Q8N8F6 280 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 ZNF555Q8NEP9 628 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 OR52H1Q8NGJ2 320 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 OR51A4Q8NGJ6 313 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 SPRYD4Q8WW59 207 aaPredicted RBP7.74□□□□□ -1.17
VPS35-206ENST00000565228 ITPKCQ96DU7 683 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 FAM71F1Q96KD3 344 aaPredicted RBP7.74□□□□□ -1.17
VPS35-206ENST00000565228 MNTQ99583 582 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 ADAT1Q9BUB4 502 aaKnown RBP7.74□□□□□ -1.17
VPS35-206ENST00000565228 ALG8Q9BVK2 526 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 FGF20Q9NP95 211 aaPredicted RBP7.74□□□□□ -1.17
VPS35-206ENST00000565228 MYOZ1Q9NP98 299 aaPredicted RBP7.74□□□□□ -1.17
VPS35-206ENST00000565228 DECR2Q9NUI1 292 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 UFSP2Q9NUQ7 469 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 FKBP14Q9NWM8 211 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 MRPL15Q9P015 296 aaKnown RBP7.74□□□□□ -1.17
VPS35-206ENST00000565228 DUX4Q9UBX2 424 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 CGGBP1Q9UFW8 167 aaPredicted RBP7.74□□□□□ -1.17
VPS35-206ENST00000565228 FBXO9Q9UK97 447 aaPredicted RBP7.74□□□□□ -1.17
VPS35-206ENST00000565228 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP7.74□□□□□ -1.17
VPS35-206ENST00000565228 TMEM14AQ9Y6G1 99 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 V9GYS6 101 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 HIVEP2P31629 2446 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 NBEAL1Q6ZS30 2694 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 OR4C45A6NMZ5 311 aa7.73□□□□□ -1.17
VPS35-206ENST00000565228 LOC110117498-PIK3R3F6TDL0 507 aa7.73□□□□□ -1.17
VPS35-206ENST00000565228 CD5LO43866 347 aa7.73□□□□□ -1.17
VPS35-206ENST00000565228 SULT1C4O75897 302 aa7.73□□□□□ -1.17
VPS35-206ENST00000565228 CST4P01036 141 aa7.73□□□□□ -1.17
VPS35-206ENST00000565228 ZFP36P26651 326 aaKnown RBP7.73□□□□□ -1.17
VPS35-206ENST00000565228 C21orf33P30042 268 aaPredicted RBP7.73□□□□□ -1.17
VPS35-206ENST00000565228 TMEM33P57088 247 aa7.73□□□□□ -1.17
VPS35-206ENST00000565228 POU4F2Q12837 409 aa7.73□□□□□ -1.17
VPS35-206ENST00000565228 ZNF154Q13106 437 aa7.73□□□□□ -1.17
VPS35-206ENST00000565228 PRDX4Q13162 271 aa7.73□□□□□ -1.17
VPS35-206ENST00000565228 RIPK1Q13546 671 aa7.73□□□□□ -1.17
VPS35-206ENST00000565228 GALEQ14376 348 aa7.73□□□□□ -1.17
VPS35-206ENST00000565228 OR8G1Q15617 311 aa7.73□□□□□ -1.17
VPS35-206ENST00000565228 MOGQ16653 247 aa7.73□□□□□ -1.17
VPS35-206ENST00000565228 TTC23Q5W5X9 447 aa7.73□□□□□ -1.17
VPS35-206ENST00000565228 TMEM42Q69YG0 159 aa7.73□□□□□ -1.17
VPS35-206ENST00000565228 FDX2Q6P4F2 183 aa7.73□□□□□ -1.17
VPS35-206ENST00000565228 BIVMQ86UB2 503 aa7.73□□□□□ -1.17
VPS35-206ENST00000565228 GCSAMQ8N6F7 178 aa7.73□□□□□ -1.17
VPS35-206ENST00000565228 ACBD7Q8N6N7 88 aa7.73□□□□□ -1.17
VPS35-206ENST00000565228 OR2G2Q8NGZ5 317 aa7.73□□□□□ -1.17
VPS35-206ENST00000565228 Q8TCH9 128 aa7.73□□□□□ -1.17
VPS35-206ENST00000565228 OR5P3Q8WZ94 311 aa7.73□□□□□ -1.17
VPS35-206ENST00000565228 PIGCQ92535 297 aa7.73□□□□□ -1.17
VPS35-206ENST00000565228 RFKQ969G6 155 aa7.73□□□□□ -1.17
VPS35-206ENST00000565228 C4orf36Q96KX1 117 aa7.73□□□□□ -1.17
VPS35-206ENST00000565228 JAM3Q9BX67 310 aa7.73□□□□□ -1.17
VPS35-206ENST00000565228 TMEM165Q9HC07 324 aa7.73□□□□□ -1.17
VPS35-206ENST00000565228 GNG8Q9UK08 70 aa7.73□□□□□ -1.17
VPS35-206ENST00000565228 SNX5Q9Y5X3 404 aa7.73□□□□□ -1.17
VPS35-206ENST00000565228 NPTNQ9Y639 398 aa7.73□□□□□ -1.17
VPS35-206ENST00000565228 FBN1P35555 2871 aaKnown RBP7.73□□□□□ -1.17
VPS35-206ENST00000565228 IGKV1-27A0A075B6S5 117 aa7.72□□□□□ -1.17
VPS35-206ENST00000565228 IGKV1-9A0A0C4DH69 117 aa7.72□□□□□ -1.17
VPS35-206ENST00000565228 DAPL1A0PJW8 107 aa7.72□□□□□ -1.17
VPS35-206ENST00000565228 ACOD1A6NK06 481 aa7.72□□□□□ -1.17
VPS35-206ENST00000565228 KIAA1324LA8MWY0 1029 aaPredicted RBP7.72□□□□□ -1.17
VPS35-206ENST00000565228 F5H0A9 414 aaPredicted RBP7.72□□□□□ -1.17
VPS35-206ENST00000565228 J3QLW9 94 aa7.72□□□□□ -1.17
VPS35-206ENST00000565228 PHYHO14832 338 aa7.72□□□□□ -1.17
VPS35-206ENST00000565228 TPD52L2O43399 206 aaKnown RBP7.72□□□□□ -1.17
VPS35-206ENST00000565228 MPZL2O60487 215 aa7.72□□□□□ -1.17
VPS35-206ENST00000565228 RHBDL1O75783 438 aa7.72□□□□□ -1.17
VPS35-206ENST00000565228 AVPP01185 164 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms