RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 DAOP14920 347 aa8.28□□□□□ -1.08
CLK3-208ENST00000562626 THBS2P35442 1172 aa8.28□□□□□ -1.08
CLK3-208ENST00000562626 CDH15P55291 814 aa8.28□□□□□ -1.08
CLK3-208ENST00000562626 TNFAIP6P98066 277 aaPredicted RBP8.28□□□□□ -1.08
CLK3-208ENST00000562626 PRDX4Q13162 271 aa8.28□□□□□ -1.08
CLK3-208ENST00000562626 MPPED2Q15777 294 aa8.28□□□□□ -1.08
CLK3-208ENST00000562626 CLEC12BQ2HXU8 276 aa8.28□□□□□ -1.08
CLK3-208ENST00000562626 ASPHD2Q6ICH7 369 aa8.28□□□□□ -1.08
CLK3-208ENST00000562626 RNF144BQ7Z419 303 aa8.28□□□□□ -1.08
CLK3-208ENST00000562626 KCTD20Q7Z5Y7 419 aa8.28□□□□□ -1.08
CLK3-208ENST00000562626 COMMD2Q86X83 199 aa8.28□□□□□ -1.08
CLK3-208ENST00000562626 KLHL36Q8N4N3 616 aa8.28□□□□□ -1.08
CLK3-208ENST00000562626 MAPK1IP1LQ8NDC0 245 aa8.28□□□□□ -1.08
CLK3-208ENST00000562626 OR13G1Q8NGZ3 307 aa8.28□□□□□ -1.08
CLK3-208ENST00000562626 OR52N1Q8NH53 320 aa8.28□□□□□ -1.08
CLK3-208ENST00000562626 ZNF420Q8TAQ5 688 aaPredicted RBP8.28□□□□□ -1.08
CLK3-208ENST00000562626 UBASH3BQ8TF42 649 aa8.28□□□□□ -1.08
CLK3-208ENST00000562626 TRMT61AQ96FX7 289 aaKnown RBP8.28□□□□□ -1.08
CLK3-208ENST00000562626 MEGF10Q96KG7 1140 aa8.28□□□□□ -1.08
CLK3-208ENST00000562626 OR2V2Q96R30 315 aa8.28□□□□□ -1.08
CLK3-208ENST00000562626 ADAT1Q9BUB4 502 aaKnown RBP8.28□□□□□ -1.08
CLK3-208ENST00000562626 CDCA4Q9BXL8 241 aa8.28□□□□□ -1.08
CLK3-208ENST00000562626 RGCCQ9H4X1 137 aa8.28□□□□□ -1.08
CLK3-208ENST00000562626 TMEM100Q9NV29 134 aa8.28□□□□□ -1.08
CLK3-208ENST00000562626 NKIRAS2Q9NYR9 191 aa8.28□□□□□ -1.08
CLK3-208ENST00000562626 PIGLQ9Y2B2 252 aa8.28□□□□□ -1.08
CLK3-208ENST00000562626 ABCA1O95477 2261 aa8.27□□□□□ -1.09
CLK3-208ENST00000562626 PNMA8CA0A1B0GUJ8 204 aa8.27□□□□□ -1.09
CLK3-208ENST00000562626 VWC2LB2RUY7 222 aa8.27□□□□□ -1.09
CLK3-208ENST00000562626 OGG1O15527 345 aa8.27□□□□□ -1.09
CLK3-208ENST00000562626 DHRS3O75911 302 aa8.27□□□□□ -1.09
CLK3-208ENST00000562626 TACSTD2P09758 323 aa8.27□□□□□ -1.09
CLK3-208ENST00000562626 BMP4P12644 408 aa8.27□□□□□ -1.09
CLK3-208ENST00000562626 MYL12AP19105 171 aa8.27□□□□□ -1.09
CLK3-208ENST00000562626 TGM4P49221 684 aa8.27□□□□□ -1.09
CLK3-208ENST00000562626 CCR9P51686 369 aa8.27□□□□□ -1.09
CLK3-208ENST00000562626 CDK5R1Q15078 307 aa8.27□□□□□ -1.09
CLK3-208ENST00000562626 RBM48Q5RL73 367 aaKnown RBP8.27□□□□□ -1.09
CLK3-208ENST00000562626 KRT74Q7RTS7 529 aa8.27□□□□□ -1.09
CLK3-208ENST00000562626 C11orf53Q8IXP5 236 aa8.27□□□□□ -1.09
CLK3-208ENST00000562626 C10orf105Q8TEF2 133 aa8.27□□□□□ -1.09
CLK3-208ENST00000562626 NEU4Q8WWR8 484 aaPredicted RBP8.27□□□□□ -1.09
CLK3-208ENST00000562626 PIGCQ92535 297 aa8.27□□□□□ -1.09
CLK3-208ENST00000562626 ORAI1Q96D31 301 aa8.27□□□□□ -1.09
CLK3-208ENST00000562626 ITPKCQ96DU7 683 aa8.27□□□□□ -1.09
CLK3-208ENST00000562626 ADAT3Q96EY9 351 aaPredicted RBP8.27□□□□□ -1.09
CLK3-208ENST00000562626 PGLYRP3Q96LB9 341 aa8.27□□□□□ -1.09
CLK3-208ENST00000562626 PAPOLGQ9BWT3 736 aaKnown RBP8.27□□□□□ -1.09
CLK3-208ENST00000562626 SP140LQ9H930 580 aa8.27□□□□□ -1.09
CLK3-208ENST00000562626 GPR173Q9NS66 373 aa8.27□□□□□ -1.09
CLK3-208ENST00000562626 CYSLTR2Q9NS75 346 aa8.27□□□□□ -1.09
CLK3-208ENST00000562626 ZNF275Q9NSD4 429 aaPredicted RBP8.27□□□□□ -1.09
CLK3-208ENST00000562626 BABAM2Q9NXR7 383 aa8.27□□□□□ -1.09
CLK3-208ENST00000562626 SCN3BQ9NY72 215 aa8.27□□□□□ -1.09
CLK3-208ENST00000562626 MRPL15Q9P015 296 aaKnown RBP8.27□□□□□ -1.09
CLK3-208ENST00000562626 CGGBP1Q9UFW8 167 aaPredicted RBP8.27□□□□□ -1.09
CLK3-208ENST00000562626 ZDHHC8Q9ULC8 765 aa8.27□□□□□ -1.09
CLK3-208ENST00000562626 EDARQ9UNE0 448 aa8.27□□□□□ -1.09
CLK3-208ENST00000562626 TPRKBQ9Y3C4 175 aa8.27□□□□□ -1.09
CLK3-208ENST00000562626 LRRC42Q9Y546 428 aa8.27□□□□□ -1.09
CLK3-208ENST00000562626 WNK2Q9Y3S1 2297 aa8.26□□□□□ -1.09
CLK3-208ENST00000562626 TRBV2A0A0J9YWF9 115 aa8.26□□□□□ -1.09
CLK3-208ENST00000562626 LOC390937A0A1W2PQ73 354 aa8.26□□□□□ -1.09
CLK3-208ENST00000562626 SYT7O43581 403 aa8.26□□□□□ -1.09
CLK3-208ENST00000562626 RGS10O43665 173 aa8.26□□□□□ -1.09
CLK3-208ENST00000562626 CST4P01036 141 aa8.26□□□□□ -1.09
CLK3-208ENST00000562626 ISG15P05161 165 aa8.26□□□□□ -1.09
CLK3-208ENST00000562626 ACHEP22303 614 aa8.26□□□□□ -1.09
CLK3-208ENST00000562626 CFL1P23528 166 aaKnown RBP8.26□□□□□ -1.09
CLK3-208ENST00000562626 LIPAP38571 399 aa8.26□□□□□ -1.09
CLK3-208ENST00000562626 CD200P41217 278 aa8.26□□□□□ -1.09
CLK3-208ENST00000562626 CRYBB2P43320 205 aa8.26□□□□□ -1.09
CLK3-208ENST00000562626 MAP2K3P46734 347 aa8.26□□□□□ -1.09
CLK3-208ENST00000562626 GBX2P52951 348 aaPredicted RBP8.26□□□□□ -1.09
CLK3-208ENST00000562626 WNT4P56705 351 aa8.26□□□□□ -1.09
CLK3-208ENST00000562626 RPS11P62280 158 aaKnown RBP eCLIP8.26□□□□□ -1.09
CLK3-208ENST00000562626 CSNK2BP67870 215 aa8.26□□□□□ -1.09
CLK3-208ENST00000562626 RIN1Q13671 783 aa8.26□□□□□ -1.09
CLK3-208ENST00000562626 OR8G1Q15617 311 aa8.26□□□□□ -1.09
CLK3-208ENST00000562626 CARTPTQ16568 116 aa8.26□□□□□ -1.09
CLK3-208ENST00000562626 MOGQ16653 247 aa8.26□□□□□ -1.09
CLK3-208ENST00000562626 PCGF3Q3KNV8 242 aa8.26□□□□□ -1.09
CLK3-208ENST00000562626 CEP78Q5JTW2 689 aa8.26□□□□□ -1.09
CLK3-208ENST00000562626 FAM209AQ5JX71 171 aa8.26□□□□□ -1.09
CLK3-208ENST00000562626 FAM201AQ5SY85 155 aa8.26□□□□□ -1.09
CLK3-208ENST00000562626 AVPI1Q5T686 147 aa8.26□□□□□ -1.09
CLK3-208ENST00000562626 RNLSQ5VYX0 342 aa8.26□□□□□ -1.09
CLK3-208ENST00000562626 TMEM42Q69YG0 159 aa8.26□□□□□ -1.09
CLK3-208ENST00000562626 DMKNQ6E0U4 476 aaPredicted RBP8.26□□□□□ -1.09
CLK3-208ENST00000562626 CRIP3Q6Q6R5 217 aa8.26□□□□□ -1.09
CLK3-208ENST00000562626 ZNF826PQ6ZT77 177 aa8.26□□□□□ -1.09
CLK3-208ENST00000562626 DOK3Q7L591 496 aa8.26□□□□□ -1.09
CLK3-208ENST00000562626 MOGAT3Q86VF5 341 aa8.26□□□□□ -1.09
CLK3-208ENST00000562626 CSNK2A3Q8NEV1 391 aa8.26□□□□□ -1.09
CLK3-208ENST00000562626 SEMA6DQ8NFY4 1073 aa8.26□□□□□ -1.09
CLK3-208ENST00000562626 MYDGFQ969H8 173 aa8.26□□□□□ -1.09
CLK3-208ENST00000562626 RASSF4Q9H2L5 321 aa8.26□□□□□ -1.09
CLK3-208ENST00000562626 OPA3Q9H6K4 179 aa8.26□□□□□ -1.09
CLK3-208ENST00000562626 METTL17Q9H7H0 456 aaPredicted RBP8.26□□□□□ -1.09
CLK3-208ENST00000562626 SAP30LQ9HAJ7 183 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms