RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 ZNF736B4DX44 427 aaPredicted RBP6.57□□□□□ -1.36
VPS39-204ENST00000561818 DVL2O14641 736 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 NKX2-8O15522 239 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 CREBL2O60519 120 aaPredicted RBP6.57□□□□□ -1.36
VPS39-204ENST00000561818 NDUFB6O95139 128 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 CST4P01036 141 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 NRASP01111 189 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 MMP7P09237 267 aaPredicted RBP6.57□□□□□ -1.36
VPS39-204ENST00000561818 CD3GP09693 182 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 H2AFB2P0C5Z0 115 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 ANXA3P12429 323 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 GTF2F2P13984 249 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 PTGFRP43088 359 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 TAS2R31P59538 309 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 GNG2P59768 71 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 DGCR2P98153 550 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 PSG4Q00888 419 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 KISS1Q15726 138 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 NDUFA5Q16718 116 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 DEFB109BQ30KR1 87 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 RNASE10Q5GAN6 216 aaKnown RBP6.57□□□□□ -1.36
VPS39-204ENST00000561818 TSPO2Q5TGU0 170 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 NSUN5P2Q63ZY6 315 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 TMEM42Q69YG0 159 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 STEAP1BQ6NZ63 245 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 PLXDC2Q6UX71 529 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 Q6ZS92 163 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 BEND4Q6ZU67 534 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 MRPL21Q7Z2W9 205 aaKnown RBP6.57□□□□□ -1.36
VPS39-204ENST00000561818 NAA40Q86UY6 237 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 ANGPTL5Q86XS5 388 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 TUSC5Q8IXB3 177 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 Q8IYB0 196 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 OR10R2Q8NGX6 335 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 OR52I2Q8NH67 350 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 AQP3Q92482 292 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 SLC7A6Q92536 515 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 RAB3CQ96E17 227 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 ADAT3Q96EY9 351 aaPredicted RBP6.57□□□□□ -1.36
VPS39-204ENST00000561818 ZNF845Q96IR2 970 aaPredicted RBP6.57□□□□□ -1.36
VPS39-204ENST00000561818 NEDD4LQ96PU5 975 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 TM2D1Q9BX74 207 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 CHST6Q9GZX3 395 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 C20orf85Q9H1P6 137 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 MED28Q9H204 178 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 SLC7A10Q9NS82 523 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 NUDT15Q9NV35 164 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 TUBD1Q9UJT1 453 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 HSF4Q9ULV5 492 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 CLEC4AQ9UMR7 237 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 ING4Q9UNL4 249 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 PIGLQ9Y2B2 252 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 AMDHD2Q9Y303 409 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 CACNA1CQ13936 2221 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 A0A1B0GTH9 108 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 hCG_38984A0A1B0GV85 526 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 ANKRD30BLA7E2S9 258 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 H7C1Q1 480 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 KLK10O43240 276 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 RGS11O94810 467 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 CD74P04233 296 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 IFNA6P05013 189 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 GLAP06280 429 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 HIST1H1DP16402 221 aaKnown RBP6.56□□□□□ -1.36
VPS39-204ENST00000561818 DTYMKP23919 212 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 GIFP27352 417 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 MTCP1P56278 107 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 ARF1P84077 181 aaKnown RBP6.56□□□□□ -1.36
VPS39-204ENST00000561818 RBPJQ06330 500 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 FAPQ12884 760 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 SURF2Q15527 256 aaPredicted RBP6.56□□□□□ -1.36
VPS39-204ENST00000561818 TGIF1Q15583 401 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 MPPED2Q15777 294 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 PABPC1L2AQ5JQF8 200 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 NHLRC3Q5JS37 347 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 PHYHD1Q5SRE7 291 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 FAM180AQ6UWF9 173 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 GLIPR1L1Q6UWM5 242 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 ZNF782Q6ZMW2 699 aaPredicted RBP6.56□□□□□ -1.36
VPS39-204ENST00000561818 Q6ZTK2 550 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 VASH2Q86V25 355 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 TMEM200AQ86VY9 491 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 LIX1LQ8IVB5 337 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 MKXQ8IYA7 352 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 IZUMO1Q8IYV9 350 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 FAM89BQ8N5H3 189 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 ZDHHC22Q8N966 263 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 OR52N4Q8NGI2 321 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 OR1K1Q8NGR3 316 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 OR6F1Q8NGZ6 308 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 GRPEL2Q8TAA5 225 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 UBASH3BQ8TF42 649 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 SSC4DQ8WTU2 575 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 SNRNP27Q8WVK2 155 aaKnown RBP6.56□□□□□ -1.36
VPS39-204ENST00000561818 UPRTQ96BW1 309 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 RADILQ96JH8 1075 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 HYLS1Q96M11 299 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 GAL3ST1Q99999 423 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 WNT5BQ9H1J7 359 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 OR10A4Q9H209 315 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms