RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 ADGRG5Q8IZF4 528 aa15.7■□□□□ 0.1
VPS35-202ENST00000561713 HS3ST5Q8IZT8 346 aa15.7■□□□□ 0.1
VPS35-202ENST00000561713 GIPC3Q8TF64 312 aa15.7■□□□□ 0.1
VPS35-202ENST00000561713 RNF133Q8WVZ7 376 aa15.7■□□□□ 0.1
VPS35-202ENST00000561713 SGK3Q96BR1 496 aa15.7■□□□□ 0.1
VPS35-202ENST00000561713 PKP2Q99959 881 aa15.7■□□□□ 0.1
VPS35-202ENST00000561713 PAPOLGQ9BWT3 736 aaKnown RBP15.7■□□□□ 0.1
VPS35-202ENST00000561713 CHIAQ9BZP6 476 aa15.7■□□□□ 0.1
VPS35-202ENST00000561713 MMP27Q9H306 513 aa15.7■□□□□ 0.1
VPS35-202ENST00000561713 OPA3Q9H6K4 179 aa15.7■□□□□ 0.1
VPS35-202ENST00000561713 KLHDC2Q9Y2U9 406 aa15.7■□□□□ 0.1
VPS35-202ENST00000561713 M0QZ24 198 aa15.69■□□□□ 0.1
VPS35-202ENST00000561713 TNFRSF13BO14836 293 aaPredicted RBP15.69■□□□□ 0.1
VPS35-202ENST00000561713 T-ENOLP0DO92 83 aa15.69■□□□□ 0.1
VPS35-202ENST00000561713 RAP2AP10114 183 aa15.69■□□□□ 0.1
VPS35-202ENST00000561713 SELLP14151 372 aa15.69■□□□□ 0.1
VPS35-202ENST00000561713 OPRL1P41146 370 aa15.69■□□□□ 0.1
VPS35-202ENST00000561713 NAA10P41227 235 aaPredicted RBP15.69■□□□□ 0.1
VPS35-202ENST00000561713 SLC15A1P46059 708 aa15.69■□□□□ 0.1
VPS35-202ENST00000561713 NPY4RP50391 375 aa15.69■□□□□ 0.1
VPS35-202ENST00000561713 PLBD1Q6P4A8 553 aa15.69■□□□□ 0.1
VPS35-202ENST00000561713 Q6YL49 198 aa15.69■□□□□ 0.1
VPS35-202ENST00000561713 BTN2A1Q7KYR7 527 aa15.69■□□□□ 0.1
VPS35-202ENST00000561713 C11orf53Q8IXP5 236 aa15.69■□□□□ 0.1
VPS35-202ENST00000561713 TIGD4Q8IY51 512 aa15.69■□□□□ 0.1
VPS35-202ENST00000561713 ARHGAP24Q8N264 748 aa15.69■□□□□ 0.1
VPS35-202ENST00000561713 FAM216BQ8N7L0 139 aa15.69■□□□□ 0.1
VPS35-202ENST00000561713 BBS1Q8NFJ9 593 aa15.69■□□□□ 0.1
VPS35-202ENST00000561713 PGAM5Q96HS1 289 aa15.69■□□□□ 0.1
VPS35-202ENST00000561713 LRGUKQ96M69 825 aa15.69■□□□□ 0.1
VPS35-202ENST00000561713 WDFY2Q96P53 400 aa15.69■□□□□ 0.1
VPS35-202ENST00000561713 SIRPDQ9H106 197 aa15.69■□□□□ 0.1
VPS35-202ENST00000561713 C14orf119Q9NWQ9 140 aa15.69■□□□□ 0.1
VPS35-202ENST00000561713 RHBDD3Q9Y3P4 386 aa15.69■□□□□ 0.1
VPS35-202ENST00000561713 CENPVL3A0A0U1RRI6 287 aa15.68■□□□□ 0.1
VPS35-202ENST00000561713 CLPSL1A2RUU4 121 aa15.68■□□□□ 0.1
VPS35-202ENST00000561713 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP15.68■□□□□ 0.1
VPS35-202ENST00000561713 GLCEO94923 617 aa15.68■□□□□ 0.1
VPS35-202ENST00000561713 NDUFA7O95182 113 aa15.68■□□□□ 0.1
VPS35-202ENST00000561713 CST1P01037 141 aa15.68■□□□□ 0.1
VPS35-202ENST00000561713 MELTFP08582 738 aa15.68■□□□□ 0.1
VPS35-202ENST00000561713 CALB2P22676 271 aa15.68■□□□□ 0.1
VPS35-202ENST00000561713 GSK3AP49840 483 aa15.68■□□□□ 0.1
VPS35-202ENST00000561713 ARF6P62330 175 aa15.68■□□□□ 0.1
VPS35-202ENST00000561713 WDR38Q5JTN6 314 aa15.68■□□□□ 0.1
VPS35-202ENST00000561713 WDR82Q6UXN9 313 aa15.68■□□□□ 0.1
VPS35-202ENST00000561713 SPERTQ8NA61 448 aa15.68■□□□□ 0.1
VPS35-202ENST00000561713 PLPP7Q8NBV4 271 aa15.68■□□□□ 0.1
VPS35-202ENST00000561713 OR1M1Q8NGA1 313 aa15.68■□□□□ 0.1
VPS35-202ENST00000561713 LHX4Q969G2 390 aa15.68■□□□□ 0.1
VPS35-202ENST00000561713 ASB9Q96DX5 294 aa15.68■□□□□ 0.1
VPS35-202ENST00000561713 CCL13Q99616 98 aa15.68■□□□□ 0.1
VPS35-202ENST00000561713 CHID1Q9BWS9 393 aa15.68■□□□□ 0.1
VPS35-202ENST00000561713 FGF23Q9GZV9 251 aaPredicted RBP15.68■□□□□ 0.1
VPS35-202ENST00000561713 TOR3AQ9H497 397 aa15.68■□□□□ 0.1
VPS35-202ENST00000561713 P2RY10O00398 339 aa15.67■□□□□ 0.1
VPS35-202ENST00000561713 LHBP01229 141 aa15.67■□□□□ 0.1
VPS35-202ENST00000561713 H2BFMP0C1H6 154 aa15.67■□□□□ 0.1
VPS35-202ENST00000561713 ACKR3P25106 362 aa15.67■□□□□ 0.1
VPS35-202ENST00000561713 BLVRAP53004 296 aa15.67■□□□□ 0.1
VPS35-202ENST00000561713 DLX1P56177 255 aa15.67■□□□□ 0.1
VPS35-202ENST00000561713 METTL11BQ5VVY1 283 aa15.67■□□□□ 0.1
VPS35-202ENST00000561713 TEX36Q5VZQ5 186 aa15.67■□□□□ 0.1
VPS35-202ENST00000561713 CD276Q5ZPR3 534 aa15.67■□□□□ 0.1
VPS35-202ENST00000561713 ASPHD2Q6ICH7 369 aa15.67■□□□□ 0.1
VPS35-202ENST00000561713 CD300LDQ6UXZ3 194 aa15.67■□□□□ 0.1
VPS35-202ENST00000561713 CCDC197Q8NCU1 140 aa15.67■□□□□ 0.1
VPS35-202ENST00000561713 RBM4BQ9BQ04 359 aaKnown RBP15.67■□□□□ 0.1
VPS35-202ENST00000561713 OR10A2Q9H208 303 aa15.67■□□□□ 0.1
VPS35-202ENST00000561713 SEMA6AQ9H2E6 1030 aa15.67■□□□□ 0.1
VPS35-202ENST00000561713 NOX4Q9NPH5 578 aa15.67■□□□□ 0.1
VPS35-202ENST00000561713 TRIM36Q9NQ86 728 aa15.67■□□□□ 0.1
VPS35-202ENST00000561713 PRPF19Q9UMS4 504 aaKnown RBP15.67■□□□□ 0.1
VPS35-202ENST00000561713 ACOT8O14734 319 aa15.66■□□□□ 0.1
VPS35-202ENST00000561713 TIMM23O14925 209 aa15.66■□□□□ 0.1
VPS35-202ENST00000561713 GNALP38405 381 aa15.66■□□□□ 0.1
VPS35-202ENST00000561713 DDOSTP39656 456 aa15.66■□□□□ 0.1
VPS35-202ENST00000561713 MZT1Q08AG7 82 aa15.66■□□□□ 0.1
VPS35-202ENST00000561713 IKZF1Q13422 519 aa15.66■□□□□ 0.1
VPS35-202ENST00000561713 GINS1Q14691 196 aa15.66■□□□□ 0.1
VPS35-202ENST00000561713 PNLDC1Q8NA58 520 aaKnown RBP15.66■□□□□ 0.1
VPS35-202ENST00000561713 CANT1Q8WVQ1 401 aa15.66■□□□□ 0.1
VPS35-202ENST00000561713 RPL3LQ92901 407 aaKnown RBP15.66■□□□□ 0.1
VPS35-202ENST00000561713 THTPAQ9BU02 230 aa15.66■□□□□ 0.1
VPS35-202ENST00000561713 TTTY10Q9BZA0 68 aa15.66■□□□□ 0.1
VPS35-202ENST00000561713 SNTG1Q9NSN8 517 aa15.66■□□□□ 0.1
VPS35-202ENST00000561713 KIF17Q9P2E2 1029 aa15.66■□□□□ 0.1
VPS35-202ENST00000561713 ONECUT1Q9UBC0 465 aa15.66■□□□□ 0.1
VPS35-202ENST00000561713 DNAJB11Q9UBS4 358 aa15.66■□□□□ 0.1
VPS35-202ENST00000561713 A0A0U1RQK1 487 aa15.65■□□□□ 0.1
VPS35-202ENST00000561713 PRR23D1E9PI22 279 aaPredicted RBP15.65■□□□□ 0.1
VPS35-202ENST00000561713 CDIPTO14735 213 aa15.65■□□□□ 0.1
VPS35-202ENST00000561713 E2F6O75461 281 aa15.65■□□□□ 0.1
VPS35-202ENST00000561713 PRR23D2P0DMB1 279 aaPredicted RBP15.65■□□□□ 0.1
VPS35-202ENST00000561713 PAICSP22234 425 aaKnown RBP15.65■□□□□ 0.1
VPS35-202ENST00000561713 BPIFB3P59826 476 aa15.65■□□□□ 0.1
VPS35-202ENST00000561713 PRDX4Q13162 271 aa15.65■□□□□ 0.1
VPS35-202ENST00000561713 SHFQ7M4L6 423 aa15.65■□□□□ 0.1
VPS35-202ENST00000561713 VMO1Q7Z5L0 202 aa15.65■□□□□ 0.1
VPS35-202ENST00000561713 C1QL4Q86Z23 238 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms