RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 BEND2Q8NDZ0 799 aa13.44□□□□□ -0.26
CLN3-208ENST00000561505 PROKR2Q8NFJ6 384 aa13.44□□□□□ -0.26
CLN3-208ENST00000561505 ITPKCQ96DU7 683 aa13.44□□□□□ -0.26
CLN3-208ENST00000561505 NSRP1Q9H0G5 558 aaKnown RBP13.44□□□□□ -0.26
CLN3-208ENST00000561505 TOR3AQ9H497 397 aa13.44□□□□□ -0.26
CLN3-208ENST00000561505 EGLN3Q9H6Z9 239 aa13.44□□□□□ -0.26
CLN3-208ENST00000561505 hCG_1807616A0A1W2PRN6 198 aa13.43□□□□□ -0.26
CLN3-208ENST00000561505 MEGF11A6BM72 1044 aa13.43□□□□□ -0.26
CLN3-208ENST00000561505 M0R1W7 72 aa13.43□□□□□ -0.26
CLN3-208ENST00000561505 NDUFB3O43676 98 aa13.43□□□□□ -0.26
CLN3-208ENST00000561505 OPN1MWP04001 364 aa13.43□□□□□ -0.26
CLN3-208ENST00000561505 OPN1MW2P0DN77 364 aa13.43□□□□□ -0.26
CLN3-208ENST00000561505 OPN1MW3P0DN78 364 aa13.43□□□□□ -0.26
CLN3-208ENST00000561505 SLC2A1P11166 492 aa13.43□□□□□ -0.26
CLN3-208ENST00000561505 EEF1B2P24534 225 aaKnown RBP13.43□□□□□ -0.26
CLN3-208ENST00000561505 PRDX6P30041 224 aa13.43□□□□□ -0.26
CLN3-208ENST00000561505 FMO3P31513 532 aa13.43□□□□□ -0.26
CLN3-208ENST00000561505 EFNB2P52799 333 aa13.43□□□□□ -0.26
CLN3-208ENST00000561505 CSNK2BP67870 215 aa13.43□□□□□ -0.26
CLN3-208ENST00000561505 MXRA7P84157 204 aa13.43□□□□□ -0.26
CLN3-208ENST00000561505 EGR3Q06889 387 aa13.43□□□□□ -0.26
CLN3-208ENST00000561505 LINC01590Q5TEZ4 76 aa13.43□□□□□ -0.26
CLN3-208ENST00000561505 C11orf88Q6PI97 169 aa13.43□□□□□ -0.26
CLN3-208ENST00000561505 RASSF6Q6ZTQ3 369 aa13.43□□□□□ -0.26
CLN3-208ENST00000561505 OR8D4Q8NGM9 314 aa13.43□□□□□ -0.26
CLN3-208ENST00000561505 FAM110DQ8TAY7 271 aaPredicted RBP13.43□□□□□ -0.26
CLN3-208ENST00000561505 RNF133Q8WVZ7 376 aa13.43□□□□□ -0.26
CLN3-208ENST00000561505 SEH1LQ96EE3 360 aa13.43□□□□□ -0.26
CLN3-208ENST00000561505 RAB3IPQ96QF0 476 aaPredicted RBP13.43□□□□□ -0.26
CLN3-208ENST00000561505 COPS4Q9BT78 406 aa13.43□□□□□ -0.26
CLN3-208ENST00000561505 PPP1R3EQ9H7J1 279 aa13.43□□□□□ -0.26
CLN3-208ENST00000561505 SIRT7Q9NRC8 400 aa13.43□□□□□ -0.26
CLN3-208ENST00000561505 HAO2Q9NYQ3 351 aa13.43□□□□□ -0.26
CLN3-208ENST00000561505 ZNF319Q9P2F9 582 aa13.43□□□□□ -0.26
CLN3-208ENST00000561505 DHRS12A0PJE2 317 aa13.42□□□□□ -0.26
CLN3-208ENST00000561505 BTBD17A6NE02 478 aa13.42□□□□□ -0.26
CLN3-208ENST00000561505 ZNF593O00488 134 aaPredicted RBP13.42□□□□□ -0.26
CLN3-208ENST00000561505 CDIPTO14735 213 aa13.42□□□□□ -0.26
CLN3-208ENST00000561505 KRT36O76013 467 aa13.42□□□□□ -0.26
CLN3-208ENST00000561505 CSF1P09603 554 aa13.42□□□□□ -0.26
CLN3-208ENST00000561505 CFL1P23528 166 aaKnown RBP13.42□□□□□ -0.26
CLN3-208ENST00000561505 RRM2P31350 389 aa13.42□□□□□ -0.26
CLN3-208ENST00000561505 DCTDP32321 178 aa13.42□□□□□ -0.26
CLN3-208ENST00000561505 SAA4P35542 130 aa13.42□□□□□ -0.26
CLN3-208ENST00000561505 SLC15A1P46059 708 aa13.42□□□□□ -0.26
CLN3-208ENST00000561505 BLVRAP53004 296 aa13.42□□□□□ -0.26
CLN3-208ENST00000561505 CAV3P56539 151 aa13.42□□□□□ -0.26
CLN3-208ENST00000561505 GRB2P62993 217 aaKnown RBP13.42□□□□□ -0.26
CLN3-208ENST00000561505 HERPUD1Q15011 391 aa13.42□□□□□ -0.26
CLN3-208ENST00000561505 AANATQ16613 207 aa13.42□□□□□ -0.26
CLN3-208ENST00000561505 HCP5Q6MZN7 132 aa13.42□□□□□ -0.26
CLN3-208ENST00000561505 LINC00471Q8N535 108 aa13.42□□□□□ -0.26
CLN3-208ENST00000561505 ZNF511Q8NB15 262 aa13.42□□□□□ -0.26
CLN3-208ENST00000561505 OR52H1Q8NGJ2 320 aa13.42□□□□□ -0.26
CLN3-208ENST00000561505 OR8S1Q8NH09 359 aa13.42□□□□□ -0.26
CLN3-208ENST00000561505 ANGPTL6Q8NI99 470 aa13.42□□□□□ -0.26
CLN3-208ENST00000561505 CMTM5Q96DZ9 223 aa13.42□□□□□ -0.26
CLN3-208ENST00000561505 BTBD10Q9BSF8 475 aa13.42□□□□□ -0.26
CLN3-208ENST00000561505 MEGF9Q9H1U4 602 aa13.42□□□□□ -0.26
CLN3-208ENST00000561505 METTL8Q9H825 291 aaKnown RBP13.42□□□□□ -0.26
CLN3-208ENST00000561505 SP140LQ9H930 580 aa13.42□□□□□ -0.26
CLN3-208ENST00000561505 ARGLU1Q9NWB6 273 aaPredicted RBP13.42□□□□□ -0.26
CLN3-208ENST00000561505 ONECUT1Q9UBC0 465 aa13.42□□□□□ -0.26
CLN3-208ENST00000561505 MAGEL2Q9UJ55 1249 aa13.42□□□□□ -0.26
CLN3-208ENST00000561505 APOC1P02654 83 aa13.41□□□□□ -0.26
CLN3-208ENST00000561505 FABP3P05413 133 aa13.41□□□□□ -0.26
CLN3-208ENST00000561505 SPI1P17947 270 aa13.41□□□□□ -0.26
CLN3-208ENST00000561505 GSK3AP49840 483 aa13.41□□□□□ -0.26
CLN3-208ENST00000561505 LRRC10Q5BKY1 277 aa13.41□□□□□ -0.26
CLN3-208ENST00000561505 NCR3LG1Q68D85 454 aa13.41□□□□□ -0.26
CLN3-208ENST00000561505 CSNK2A3Q8NEV1 391 aa13.41□□□□□ -0.26
CLN3-208ENST00000561505 OR52L1Q8NGH7 329 aa13.41□□□□□ -0.26
CLN3-208ENST00000561505 OR51L1Q8NGJ5 315 aa13.41□□□□□ -0.26
CLN3-208ENST00000561505 OR9Q1Q8NGQ5 310 aa13.41□□□□□ -0.26
CLN3-208ENST00000561505 PPP1R35Q8TAP8 253 aa13.41□□□□□ -0.26
CLN3-208ENST00000561505 MED30Q96HR3 178 aa13.41□□□□□ -0.26
CLN3-208ENST00000561505 REEP6Q96HR9 211 aa13.41□□□□□ -0.26
CLN3-208ENST00000561505 GAFA1Q96PS6 74 aa13.41□□□□□ -0.26
CLN3-208ENST00000561505 CENPMQ9NSP4 180 aa13.41□□□□□ -0.26
CLN3-208ENST00000561505 RHBDD3Q9Y3P4 386 aa13.41□□□□□ -0.26
CLN3-208ENST00000561505 MAB21L2Q9Y586 359 aa13.41□□□□□ -0.26
CLN3-208ENST00000561505 MPC1Q9Y5U8 109 aa13.41□□□□□ -0.26
CLN3-208ENST00000561505 LYVE1Q9Y5Y7 322 aa13.41□□□□□ -0.26
CLN3-208ENST00000561505 G3V4G9 280 aa13.4□□□□□ -0.26
CLN3-208ENST00000561505 SIGLEC5O15389 551 aa13.4□□□□□ -0.26
CLN3-208ENST00000561505 GMNNO75496 209 aa13.4□□□□□ -0.26
CLN3-208ENST00000561505 CST4P01036 141 aa13.4□□□□□ -0.26
CLN3-208ENST00000561505 ACAA1P09110 424 aaPredicted RBP13.4□□□□□ -0.26
CLN3-208ENST00000561505 SPARCP09486 303 aa13.4□□□□□ -0.26
CLN3-208ENST00000561505 SELLP14151 372 aa13.4□□□□□ -0.26
CLN3-208ENST00000561505 MAGEA2P43356 314 aa13.4□□□□□ -0.26
CLN3-208ENST00000561505 CX3CR1P49238 355 aa13.4□□□□□ -0.26
CLN3-208ENST00000561505 IL5RAQ01344 420 aa13.4□□□□□ -0.26
CLN3-208ENST00000561505 KLRD1Q13241 179 aa13.4□□□□□ -0.26
CLN3-208ENST00000561505 CRMP1Q14194 572 aa13.4□□□□□ -0.26
CLN3-208ENST00000561505 SNCBQ16143 134 aa13.4□□□□□ -0.26
CLN3-208ENST00000561505 DGUOKQ16854 277 aa13.4□□□□□ -0.26
CLN3-208ENST00000561505 Q6ZPA2 131 aa13.4□□□□□ -0.26
CLN3-208ENST00000561505 RNF148Q8N7C7 305 aa13.4□□□□□ -0.26
CLN3-208ENST00000561505 ABHD6Q9BV23 337 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms