RNA–Protein interactions for RNA: ENST00000555067.1

VRK1-203, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 604 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-203ENST00000555067 PPP1CBP62140 327 aa3.82□□□□□ -1.8
VRK1-203ENST00000555067 RPL10AP62906 217 aaKnown RBP3.82□□□□□ -1.8
VRK1-203ENST00000555067 CACNG7P62955 275 aa3.82□□□□□ -1.8
VRK1-203ENST00000555067 ACTG1P63261 375 aa3.82□□□□□ -1.8
VRK1-203ENST00000555067 SLC35A1P78382 337 aa3.82□□□□□ -1.8
VRK1-203ENST00000555067 CD164Q04900 197 aa3.82□□□□□ -1.8
VRK1-203ENST00000555067 C2orf54Q08AI8 447 aa3.82□□□□□ -1.8
VRK1-203ENST00000555067 TRIP13Q15645 432 aaPredicted RBP3.82□□□□□ -1.8
VRK1-203ENST00000555067 PRR30Q53SZ7 412 aaPredicted RBP3.82□□□□□ -1.8
VRK1-203ENST00000555067 PIGGQ5H8A4 983 aa3.82□□□□□ -1.8
VRK1-203ENST00000555067 HBMQ6B0K9 141 aa3.82□□□□□ -1.8
VRK1-203ENST00000555067 TEX43Q6ZNM6 134 aa3.82□□□□□ -1.8
VRK1-203ENST00000555067 SLC30A8Q8IWU4 369 aa3.82□□□□□ -1.8
VRK1-203ENST00000555067 GPD1LQ8N335 351 aa3.82□□□□□ -1.8
VRK1-203ENST00000555067 TMEM251Q8N6I4 163 aa3.82□□□□□ -1.8
VRK1-203ENST00000555067 METTL13Q8N6R0 699 aa3.82□□□□□ -1.8
VRK1-203ENST00000555067 RNF133Q8WVZ7 376 aa3.82□□□□□ -1.8
VRK1-203ENST00000555067 YIPF6Q96EC8 236 aa3.82□□□□□ -1.8
VRK1-203ENST00000555067 RNF185Q96GF1 192 aa3.82□□□□□ -1.8
VRK1-203ENST00000555067 C19orf24Q9BVV8 132 aa3.82□□□□□ -1.8
VRK1-203ENST00000555067 YTHDF1Q9BYJ9 559 aaKnown RBP3.82□□□□□ -1.8
VRK1-203ENST00000555067 PRORYQ9H606 182 aa3.82□□□□□ -1.8
VRK1-203ENST00000555067 ZNF442Q9H7R0 627 aa3.82□□□□□ -1.8
VRK1-203ENST00000555067 ZNF629Q9UEG4 869 aaPredicted RBP3.82□□□□□ -1.8
VRK1-203ENST00000555067 TFR2Q9UP52 801 aa3.82□□□□□ -1.8
VRK1-203ENST00000555067 ZNF257Q9Y2Q1 563 aa3.82□□□□□ -1.8
VRK1-203ENST00000555067 POLR3HQ9Y535 204 aaPredicted RBP3.82□□□□□ -1.8
VRK1-203ENST00000555067 NUP153P49790 1475 aaKnown RBP3.81□□□□□ -1.8
VRK1-203ENST00000555067 OR6C70A6NIJ9 312 aa3.81□□□□□ -1.8
VRK1-203ENST00000555067 GNAO1P09471 354 aa3.81□□□□□ -1.8
VRK1-203ENST00000555067 OR3A4PP47883 348 aa3.81□□□□□ -1.8
VRK1-203ENST00000555067 OR12D2P58182 307 aa3.81□□□□□ -1.8
VRK1-203ENST00000555067 CAPRIN1Q14444 709 aaKnown RBP3.81□□□□□ -1.8
VRK1-203ENST00000555067 UAP1Q16222 522 aaPredicted RBP3.81□□□□□ -1.8
VRK1-203ENST00000555067 DRAM2Q6UX65 266 aa3.81□□□□□ -1.8
VRK1-203ENST00000555067 MOB1BQ7L9L4 216 aa3.81□□□□□ -1.8
VRK1-203ENST00000555067 HSD17B13Q7Z5P4 300 aaPredicted RBP3.81□□□□□ -1.8
VRK1-203ENST00000555067 ZNF786Q8N393 782 aa3.81□□□□□ -1.8
VRK1-203ENST00000555067 C11orf72Q8NBR9 251 aa3.81□□□□□ -1.8
VRK1-203ENST00000555067 OR2G3Q8NGZ4 309 aa3.81□□□□□ -1.8
VRK1-203ENST00000555067 ESR2Q92731 530 aa3.81□□□□□ -1.8
VRK1-203ENST00000555067 CREB3L1Q96BA8 519 aa3.81□□□□□ -1.8
VRK1-203ENST00000555067 LRRC58Q96CX6 371 aa3.81□□□□□ -1.8
VRK1-203ENST00000555067 CMTM5Q96DZ9 223 aa3.81□□□□□ -1.8
VRK1-203ENST00000555067 BTN2A3PQ96KV6 586 aa3.81□□□□□ -1.8
VRK1-203ENST00000555067 HBEGFQ99075 208 aa3.81□□□□□ -1.8
VRK1-203ENST00000555067 SLIRPQ9GZT3 109 aaKnown RBP3.81□□□□□ -1.8
VRK1-203ENST00000555067 COA1Q9GZY4 146 aa3.81□□□□□ -1.8
VRK1-203ENST00000555067 PTGES2Q9H7Z7 377 aa3.81□□□□□ -1.8
VRK1-203ENST00000555067 ZDHHC11Q9H8X9 412 aa3.81□□□□□ -1.8
VRK1-203ENST00000555067 CCL28Q9NRJ3 127 aa3.81□□□□□ -1.8
VRK1-203ENST00000555067 RGS18Q9NS28 235 aa3.81□□□□□ -1.8
VRK1-203ENST00000555067 DDIT4Q9NX09 232 aa3.81□□□□□ -1.8
VRK1-203ENST00000555067 CD274Q9NZQ7 290 aa3.81□□□□□ -1.8
VRK1-203ENST00000555067 RAB23Q9ULC3 237 aa3.81□□□□□ -1.8
VRK1-203ENST00000555067 PRG3Q9Y2Y8 225 aaPredicted RBP3.81□□□□□ -1.8
VRK1-203ENST00000555067 USH1CQ9Y6N9 552 aa3.81□□□□□ -1.8
VRK1-203ENST00000555067 MAP3K15Q6ZN16 1313 aa3.8□□□□□ -1.8
VRK1-203ENST00000555067 LINC01619G3V211 115 aa3.8□□□□□ -1.8
VRK1-203ENST00000555067 XKRYO14609 159 aa3.8□□□□□ -1.8
VRK1-203ENST00000555067 HAT1O14929 419 aa3.8□□□□□ -1.8
VRK1-203ENST00000555067 KMOO15229 486 aa3.8□□□□□ -1.8
VRK1-203ENST00000555067 SLC31A1O15431 190 aa3.8□□□□□ -1.8
VRK1-203ENST00000555067 SLC31A2O15432 143 aa3.8□□□□□ -1.8
VRK1-203ENST00000555067 CRXO43186 299 aaPredicted RBP3.8□□□□□ -1.8
VRK1-203ENST00000555067 PHF1O43189 567 aaPredicted RBP3.8□□□□□ -1.8
VRK1-203ENST00000555067 VAMP5O95183 116 aa3.8□□□□□ -1.8
VRK1-203ENST00000555067 ATP6V1G2O95670 118 aa3.8□□□□□ -1.8
VRK1-203ENST00000555067 CHTF8P0CG12 524 aa3.8□□□□□ -1.8
VRK1-203ENST00000555067 ZNF35P13682 527 aa3.8□□□□□ -1.8
VRK1-203ENST00000555067 ZP3P21754 424 aa3.8□□□□□ -1.8
VRK1-203ENST00000555067 GDF1P27539 372 aa3.8□□□□□ -1.8
VRK1-203ENST00000555067 GGT2P36268 569 aa3.8□□□□□ -1.8
VRK1-203ENST00000555067 NCBP2P52298 156 aaKnown RBP eCLIP3.8□□□□□ -1.8
VRK1-203ENST00000555067 CLDN12P56749 244 aa3.8□□□□□ -1.8
VRK1-203ENST00000555067 VSX2P58304 361 aaPredicted RBP3.8□□□□□ -1.8
VRK1-203ENST00000555067 RPS23P62266 143 aaKnown RBP3.8□□□□□ -1.8
VRK1-203ENST00000555067 IL5RAQ01344 420 aa3.8□□□□□ -1.8
VRK1-203ENST00000555067 PON3Q15166 354 aa3.8□□□□□ -1.8
VRK1-203ENST00000555067 QPRTQ15274 297 aa3.8□□□□□ -1.8
VRK1-203ENST00000555067 PRSS8Q16651 343 aa3.8□□□□□ -1.8
VRK1-203ENST00000555067 MED27Q6P2C8 311 aa3.8□□□□□ -1.8
VRK1-203ENST00000555067 SLC34A3Q8N130 599 aa3.8□□□□□ -1.8
VRK1-203ENST00000555067 PHOSPHO2Q8TCD6 241 aa3.8□□□□□ -1.8
VRK1-203ENST00000555067 RNF138Q8WVD3 245 aa3.8□□□□□ -1.8
VRK1-203ENST00000555067 API5Q9BZZ5 524 aaKnown RBP3.8□□□□□ -1.8
VRK1-203ENST00000555067 CLMPQ9H6B4 373 aa3.8□□□□□ -1.8
VRK1-203ENST00000555067 CELA1Q9UNI1 258 aa3.8□□□□□ -1.8
VRK1-203ENST00000555067 F11RQ9Y624 299 aaKnown RBP3.8□□□□□ -1.8
VRK1-203ENST00000555067 CIB4A0PJX0 185 aa3.79□□□□□ -1.8
VRK1-203ENST00000555067 SMIM23A6NLE4 172 aa3.79□□□□□ -1.8
VRK1-203ENST00000555067 TNFRSF11BO00300 401 aa3.79□□□□□ -1.8
VRK1-203ENST00000555067 HPGDSO60760 199 aa3.79□□□□□ -1.8
VRK1-203ENST00000555067 LYPLA2O95372 231 aa3.79□□□□□ -1.8
VRK1-203ENST00000555067 IGHV3-43DP0DP04 118 aa3.79□□□□□ -1.8
VRK1-203ENST00000555067 ERGP11308 486 aa3.79□□□□□ -1.8
VRK1-203ENST00000555067 ICAM2P13598 275 aa3.79□□□□□ -1.8
VRK1-203ENST00000555067 MYL9P24844 172 aa3.79□□□□□ -1.8
VRK1-203ENST00000555067 CEACAM6P40199 344 aa3.79□□□□□ -1.8
VRK1-203ENST00000555067 RPL34P49207 117 aaKnown RBP3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms