RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 PAPOLGQ9BWT3 736 aaKnown RBP11.91□□□□□ -0.5
PTCH1-226ENST00000553011 FGF20Q9NP95 211 aaPredicted RBP11.91□□□□□ -0.5
PTCH1-226ENST00000553011 UFSP2Q9NUQ7 469 aa11.91□□□□□ -0.5
PTCH1-226ENST00000553011 ERVK13-1Q9NX77 482 aa11.91□□□□□ -0.5
PTCH1-226ENST00000553011 NOP16Q9Y3C1 178 aaKnown RBP11.91□□□□□ -0.5
PTCH1-226ENST00000553011 LOC100289279A0A1B0GTE1 492 aa11.9□□□□□ -0.5
PTCH1-226ENST00000553011 A0A1B0GTI1 187 aa11.9□□□□□ -0.5
PTCH1-226ENST00000553011 H0YJX3 145 aa11.9□□□□□ -0.5
PTCH1-226ENST00000553011 H3BSH0 61 aa11.9□□□□□ -0.5
PTCH1-226ENST00000553011 J3QLW9 94 aa11.9□□□□□ -0.5
PTCH1-226ENST00000553011 HEXAP06865 529 aa11.9□□□□□ -0.5
PTCH1-226ENST00000553011 IGHV4-31P0DP07 118 aa11.9□□□□□ -0.5
PTCH1-226ENST00000553011 ZNF19P17023 458 aa11.9□□□□□ -0.5
PTCH1-226ENST00000553011 GNALP38405 381 aa11.9□□□□□ -0.5
PTCH1-226ENST00000553011 KIR3DL2P43630 455 aa11.9□□□□□ -0.5
PTCH1-226ENST00000553011 GATA4P43694 442 aa11.9□□□□□ -0.5
PTCH1-226ENST00000553011 MAP2K3P46734 347 aa11.9□□□□□ -0.5
PTCH1-226ENST00000553011 CHN2P52757 468 aa11.9□□□□□ -0.5
PTCH1-226ENST00000553011 SLC3A1Q07837 685 aa11.9□□□□□ -0.5
PTCH1-226ENST00000553011 PRDX4Q13162 271 aa11.9□□□□□ -0.5
PTCH1-226ENST00000553011 WDR38Q5JTN6 314 aa11.9□□□□□ -0.5
PTCH1-226ENST00000553011 KLBQ86Z14 1044 aa11.9□□□□□ -0.5
PTCH1-226ENST00000553011 PRSS35Q8N3Z0 413 aa11.9□□□□□ -0.5
PTCH1-226ENST00000553011 CELF2-AS1Q8N7Q2 184 aa11.9□□□□□ -0.5
PTCH1-226ENST00000553011 CLDND2Q8NHS1 167 aa11.9□□□□□ -0.5
PTCH1-226ENST00000553011 FBLIM1Q8WUP2 373 aa11.9□□□□□ -0.5
PTCH1-226ENST00000553011 RAB1CQ92928 201 aa11.9□□□□□ -0.5
PTCH1-226ENST00000553011 PELI1Q96FA3 418 aa11.9□□□□□ -0.5
PTCH1-226ENST00000553011 TIMD4Q96H15 378 aa11.9□□□□□ -0.5
PTCH1-226ENST00000553011 C4orf36Q96KX1 117 aa11.9□□□□□ -0.5
PTCH1-226ENST00000553011 ISG20L2Q9H9L3 353 aaKnown RBP11.9□□□□□ -0.5
PTCH1-226ENST00000553011 NAV3Q8IVL0 2385 aa11.89□□□□□ -0.51
PTCH1-226ENST00000553011 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.89□□□□□ -0.51
PTCH1-226ENST00000553011 ZNF816-ZNF321PA0A0X1KG74 233 aa11.89□□□□□ -0.51
PTCH1-226ENST00000553011 ZNF850A8MQ14 1090 aa11.89□□□□□ -0.51
PTCH1-226ENST00000553011 TMEM178BH3BS89 294 aa11.89□□□□□ -0.51
PTCH1-226ENST00000553011 CYB5R3P00387 301 aaPredicted RBP11.89□□□□□ -0.51
PTCH1-226ENST00000553011 CST4P01036 141 aa11.89□□□□□ -0.51
PTCH1-226ENST00000553011 LIMS3P0CW19 117 aa11.89□□□□□ -0.51
PTCH1-226ENST00000553011 LIMS4P0CW20 117 aa11.89□□□□□ -0.51
PTCH1-226ENST00000553011 ATP6V1B1P15313 513 aa11.89□□□□□ -0.51
PTCH1-226ENST00000553011 FAHP16930 419 aa11.89□□□□□ -0.51
PTCH1-226ENST00000553011 NANOS3P60323 173 aaKnown RBP11.89□□□□□ -0.51
PTCH1-226ENST00000553011 ACTA2P62736 377 aa11.89□□□□□ -0.51
PTCH1-226ENST00000553011 ACTG2P63267 376 aa11.89□□□□□ -0.51
PTCH1-226ENST00000553011 SNCBQ16143 134 aa11.89□□□□□ -0.51
PTCH1-226ENST00000553011 IZUMO2Q6UXV1 221 aa11.89□□□□□ -0.51
PTCH1-226ENST00000553011 KCTD20Q7Z5Y7 419 aa11.89□□□□□ -0.51
PTCH1-226ENST00000553011 THAP5Q7Z6K1 395 aa11.89□□□□□ -0.51
PTCH1-226ENST00000553011 WDR86Q86TI4 376 aa11.89□□□□□ -0.51
PTCH1-226ENST00000553011 SPERTQ8NA61 448 aa11.89□□□□□ -0.51
PTCH1-226ENST00000553011 PLPP7Q8NBV4 271 aa11.89□□□□□ -0.51
PTCH1-226ENST00000553011 SEMA6DQ8NFY4 1073 aa11.89□□□□□ -0.51
PTCH1-226ENST00000553011 OR2G2Q8NGZ5 317 aa11.89□□□□□ -0.51
PTCH1-226ENST00000553011 OR8S1Q8NH09 359 aa11.89□□□□□ -0.51
PTCH1-226ENST00000553011 PIGCQ92535 297 aa11.89□□□□□ -0.51
PTCH1-226ENST00000553011 ITPKCQ96DU7 683 aa11.89□□□□□ -0.51
PTCH1-226ENST00000553011 FGF23Q9GZV9 251 aaPredicted RBP11.89□□□□□ -0.51
PTCH1-226ENST00000553011 VCX3BQ9H321 246 aa11.89□□□□□ -0.51
PTCH1-226ENST00000553011 INPP5EQ9NRR6 644 aa11.89□□□□□ -0.51
PTCH1-226ENST00000553011 PIGLQ9Y2B2 252 aa11.89□□□□□ -0.51
PTCH1-226ENST00000553011 RRP15Q9Y3B9 282 aaKnown RBP11.89□□□□□ -0.51
PTCH1-226ENST00000553011 NPTNQ9Y639 398 aa11.89□□□□□ -0.51
PTCH1-226ENST00000553011 ISPDA4D126 451 aa11.88□□□□□ -0.51
PTCH1-226ENST00000553011 CD5LO43866 347 aa11.88□□□□□ -0.51
PTCH1-226ENST00000553011 XPNPEP2O43895 674 aa11.88□□□□□ -0.51
PTCH1-226ENST00000553011 MTRF1O75570 445 aaKnown RBP11.88□□□□□ -0.51
PTCH1-226ENST00000553011 DHRS3O75911 302 aa11.88□□□□□ -0.51
PTCH1-226ENST00000553011 ZNF205O95201 554 aa11.88□□□□□ -0.51
PTCH1-226ENST00000553011 PTBP3O95758 552 aaKnown RBP11.88□□□□□ -0.51
PTCH1-226ENST00000553011 IGHV2-70P01814 119 aa11.88□□□□□ -0.51
PTCH1-226ENST00000553011 GRPP07492 148 aa11.88□□□□□ -0.51
PTCH1-226ENST00000553011 HTR1AP08908 422 aa11.88□□□□□ -0.51
PTCH1-226ENST00000553011 ZNF16P17020 682 aaPredicted RBP11.88□□□□□ -0.51
PTCH1-226ENST00000553011 ETV1P50549 477 aa11.88□□□□□ -0.51
PTCH1-226ENST00000553011 LMO4P61968 165 aa11.88□□□□□ -0.51
PTCH1-226ENST00000553011 HOXA4Q00056 320 aaPredicted RBP11.88□□□□□ -0.51
PTCH1-226ENST00000553011 RIPPLY1Q0D2K3 151 aa11.88□□□□□ -0.51
PTCH1-226ENST00000553011 ZMYND11Q15326 602 aa11.88□□□□□ -0.51
PTCH1-226ENST00000553011 DMRTC1Q5HYR2 192 aa11.88□□□□□ -0.51
PTCH1-226ENST00000553011 FAM201AQ5SY85 155 aa11.88□□□□□ -0.51
PTCH1-226ENST00000553011 FDX2Q6P4F2 183 aa11.88□□□□□ -0.51
PTCH1-226ENST00000553011 ZNF826PQ6ZT77 177 aa11.88□□□□□ -0.51
PTCH1-226ENST00000553011 PEG10Q86TG7 708 aaKnown RBP11.88□□□□□ -0.51
PTCH1-226ENST00000553011 RDH10Q8IZV5 341 aa11.88□□□□□ -0.51
PTCH1-226ENST00000553011 SYS1Q8N2H4 156 aa11.88□□□□□ -0.51
PTCH1-226ENST00000553011 FTMTQ8N4E7 242 aa11.88□□□□□ -0.51
PTCH1-226ENST00000553011 OR14K1Q8NGZ2 314 aa11.88□□□□□ -0.51
PTCH1-226ENST00000553011 HPSE2Q8WWQ2 592 aa11.88□□□□□ -0.51
PTCH1-226ENST00000553011 GGHQ92820 318 aa11.88□□□□□ -0.51
PTCH1-226ENST00000553011 MSI2Q96DH6 328 aaKnown RBP11.88□□□□□ -0.51
PTCH1-226ENST00000553011 MRPL48Q96GC5 212 aaKnown RBP11.88□□□□□ -0.51
PTCH1-226ENST00000553011 JAM3Q9BX67 310 aa11.88□□□□□ -0.51
PTCH1-226ENST00000553011 MPC1Q9Y5U8 109 aa11.88□□□□□ -0.51
PTCH1-226ENST00000553011 JMJD1CQ15652 2540 aa11.88□□□□□ -0.51
PTCH1-226ENST00000553011 A0A1B0GVI7 797 aa11.87□□□□□ -0.51
PTCH1-226ENST00000553011 LOC107986453A0A1B0GWG9 222 aa11.87□□□□□ -0.51
PTCH1-226ENST00000553011 IRGMA1A4Y4 181 aa11.87□□□□□ -0.51
PTCH1-226ENST00000553011 A6NIN4 97 aa11.87□□□□□ -0.51
PTCH1-226ENST00000553011 A6NLC8 198 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms