RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 MYOTQ9UBF9 498 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 CACFD1Q9UGQ2 172 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 ZNF281Q9Y2X9 895 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 KPTNQ9Y664 436 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 USP9YO00507 2555 aaPredicted RBP6.79□□□□□ -1.32
LIMA1-216ENST00000552909 CRYBG3Q68DQ2 2970 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 DOPEY2Q9Y3R5 2298 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 DIDO1Q9BTC0 2240 aaKnown RBP6.79□□□□□ -1.32
LIMA1-216ENST00000552909 PTPN13Q12923 2485 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 TRAV17A0A0B4J275 112 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 A0A0B4J2A0 478 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 hCG_1809904A0A1W2PP81 198 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 A0A1W2PPH5 198 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 A0A1W2PR64 198 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 A0A1W2PRV1 198 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 MEIS3P1A6NDR6 274 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 ZNF208O43345 1280 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 IFNA10P01566 189 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 IFNA17P01571 189 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 HLA-AP01891 365 aaKnown RBP6.79□□□□□ -1.32
LIMA1-216ENST00000552909 OR2T7P0C7T2 308 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 PGAM2P15259 253 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 MAKP20794 623 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 PSMB10P40306 273 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 SLC37A1P57057 533 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 OR2B8PP59922 312 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 PMP22Q01453 160 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 GUCA2AQ02747 115 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 HMGN3Q15651 99 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 ZNF239Q16600 458 aaKnown RBP6.79□□□□□ -1.32
LIMA1-216ENST00000552909 PNLIPRP3Q17RR3 467 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 ADAM5Q6NVV9 412 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 MDGA2Q7Z553 956 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 ANGPTL5Q86XS5 388 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 C9orf40Q8IXQ3 194 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 CYB561A3Q8NBI2 242 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 MDS2Q8NDY4 140 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 OR2T27Q8NH04 317 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 NUBPLQ8TB37 319 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 GRHL3Q8TE85 626 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 DVL3Q92997 716 aaPredicted RBP6.79□□□□□ -1.32
LIMA1-216ENST00000552909 ZBTB8AQ96BR9 441 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 MALSU1Q96EH3 234 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 SAT2Q96F10 170 aaPredicted RBP6.79□□□□□ -1.32
LIMA1-216ENST00000552909 CNN2Q99439 309 aaKnown RBP6.79□□□□□ -1.32
LIMA1-216ENST00000552909 SDF2Q99470 211 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 MICU1Q9BPX6 476 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 SULT4A1Q9BR01 284 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 SELENOIQ9C0D9 397 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 OR10A5Q9H207 317 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 CALML5Q9NZT1 146 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 LRFN1Q9P244 771 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 SHPKQ9UHJ6 478 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 SPTBN1Q01082 2364 aaKnown RBP6.78□□□□□ -1.32
LIMA1-216ENST00000552909 ADGRG4Q8IZF6 3080 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 PCNX1Q96RV3 2341 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 CENPEQ02224 2701 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 TEX13DA0A0J9YY54 714 aaPredicted RBP6.78□□□□□ -1.32
LIMA1-216ENST00000552909 WISP1O95388 367 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 ZIC2O95409 532 aaPredicted RBP6.78□□□□□ -1.32
LIMA1-216ENST00000552909 RAB3DO95716 219 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 CD5P06127 495 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 HOXB5P09067 269 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 HOXA5P20719 270 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 GALNSP34059 522 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 PRSS3P35030 304 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 CYB561P49447 251 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 SCAND1P57086 179 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 TAS2R19P59542 299 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 ACTBP60709 375 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 ACTG1P63261 375 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 SSBP1Q04837 148 aaKnown RBP6.78□□□□□ -1.32
LIMA1-216ENST00000552909 FUT7Q11130 342 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 MRPL49Q13405 166 aaKnown RBP6.78□□□□□ -1.32
LIMA1-216ENST00000552909 ZNHIT3Q15649 155 aaPredicted RBP6.78□□□□□ -1.32
LIMA1-216ENST00000552909 ARHGAP11BQ3KRB8 267 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 LBHQ53QV2 105 aaPredicted RBP6.78□□□□□ -1.32
LIMA1-216ENST00000552909 ZNF766Q5HY98 468 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 THSD4Q6ZMP0 1018 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 STAC2Q6ZMT1 411 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 SLC35F2Q8IXU6 374 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 CDK20Q8IZL9 346 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 GABRG1Q8N1C3 465 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 COX18Q8N8Q8 333 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 DCUN1D4Q92564 292 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 ISOC2Q96AB3 205 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 FOXRED1Q96CU9 486 aaPredicted RBP6.78□□□□□ -1.32
LIMA1-216ENST00000552909 ZMYND19Q96E35 227 aaPredicted RBP6.78□□□□□ -1.32
LIMA1-216ENST00000552909 RASL10BQ96S79 203 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 MTHFD2LQ9H903 347 aaPredicted RBP6.78□□□□□ -1.32
LIMA1-216ENST00000552909 FKRPQ9H9S5 495 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 FBXO34Q9NWN3 711 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 STEAP1Q9UHE8 339 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 TIMM10BQ9Y5J6 103 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 WIF1Q9Y5W5 379 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 ZNF407Q9C0G0 2248 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 DNAJC13O75165 2243 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 TRAV18A0A075B6X5 111 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 BTBD17A6NE02 478 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 YIF1AO95070 293 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms