RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 DLX2Q07687 328 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-212ENST00000552491 TGIF1Q15583 401 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 OR2A2Q6IF42 318 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 DNM1P34Q6PK57 102 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 CRIP3Q6Q6R5 217 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 LANCL3Q6ZV70 420 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 ZNF101Q8IZC7 436 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 OR5D14Q8NGL3 314 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 ARHGAP5-AS1Q96IT6 56 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 AQP10Q96PS8 301 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 CRB3Q9BUF7 120 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 KRTAP9-2Q9BYQ4 174 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 DZANK1Q9NVP4 752 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 CYP8B1Q9UNU6 501 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 WDR87Q6ZQQ6 2873 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 IGHV3-20A0A0C4DH32 117 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 A0A1W2PPE3 182 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 A6NIZ1 184 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 PRSS44E7EML9 344 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 NPIPA5E9PKD4 350 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 RNASEK-C17orf49H0YIS7 233 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 TO15178 435 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 EFNA2O43921 213 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 CDC14BO60729 498 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 CSTBP04080 98 aaKnown RBP4.79□□□□□ -1.64
LIMA1-212ENST00000552491 CD5P06127 495 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 HOXB5P09067 269 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 CBR1P16152 277 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 HIST1H1DP16402 221 aaKnown RBP4.79□□□□□ -1.64
LIMA1-212ENST00000552491 CDAP32320 146 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 PPM1FP49593 454 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-212ENST00000552491 P2RY4P51582 365 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 F2RL1P55085 397 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 GPR85P60893 370 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 RAP1BP61224 184 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 SNRPEP62304 92 aaKnown RBP4.79□□□□□ -1.64
LIMA1-212ENST00000552491 RAP1AP62834 184 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 VAX1Q5SQQ9 334 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 DHRS11Q6UWP2 260 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 C5orf46Q6UWT4 87 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 SHISA6Q6ZSJ9 500 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 C1QL2Q7Z5L3 287 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 PEG10Q86TG7 708 aaKnown RBP4.79□□□□□ -1.64
LIMA1-212ENST00000552491 LHFPL1Q86WI0 220 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 FOXRED2Q8IWF2 684 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 ARRDC1Q8N5I2 433 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 ZNF441Q8N8Z8 693 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 POC1AQ8NBT0 407 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 RAB3CQ96E17 227 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 FBXO17Q96EF6 278 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 TMEM41AQ96HV5 264 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 PARP12Q9H0J9 701 aaKnown RBP4.79□□□□□ -1.64
LIMA1-212ENST00000552491 ZNF304Q9HCX3 659 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 CUTCQ9NTM9 273 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 NPIPA1Q9UND3 350 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 MMACHCQ9Y4U1 282 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 WIF1Q9Y5W5 379 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 LHFPL6Q9Y693 200 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 IGKV1D-8A0A087WSZ0 117 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 IGKV1-9A0A0C4DH69 117 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 SHISA7A6NL88 538 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 LINC00587B1AMM8 73 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 MFNGO00587 321 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 FBXO24O75426 580 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 MED6O75586 246 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 OPN1LWP04000 364 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 GSTP1P09211 210 aaKnown RBP4.78□□□□□ -1.64
LIMA1-212ENST00000552491 OR8U9P0C7N5 309 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 HKR1P10072 659 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 ZNF708P17019 499 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 CD80P33681 288 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 BIDP55957 195 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 EIF5AP63241 154 aaKnown RBP4.78□□□□□ -1.64
LIMA1-212ENST00000552491 HSF1Q00613 529 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 ZP4Q12836 540 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 PEA15Q15121 130 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 NSDHLQ15738 373 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 AKIRIN2Q53H80 203 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 ACTBL2Q562R1 376 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 HLA-DQA1Q5Y7H0 255 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 EIF5AL1Q6IS14 154 aaKnown RBP4.78□□□□□ -1.64
LIMA1-212ENST00000552491 BTNL8Q6UX41 500 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 CLEC9AQ6UXN8 241 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 SLC16A13Q7RTY0 426 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 NAA40Q86UY6 237 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 MISPQ8IVT2 679 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 DEFB119Q8N690 84 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 OR8U1Q8NH10 309 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 NANPQ8TBE9 248 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 BSCL2Q96G97 398 aaPredicted RBP4.78□□□□□ -1.64
LIMA1-212ENST00000552491 NECAB3Q96P71 396 aaPredicted RBP4.78□□□□□ -1.64
LIMA1-212ENST00000552491 SCGB3A2Q96PL1 93 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 CLCC1Q96S66 551 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 NAA11Q9BSU3 229 aaPredicted RBP4.78□□□□□ -1.64
LIMA1-212ENST00000552491 GSKIPQ9P0R6 139 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 B3GAT1Q9P2W7 334 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 DNAJB11Q9UBS4 358 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 SRPK3Q9UPE1 567 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 OSGIN2Q9Y236 505 aa4.78□□□□□ -1.64
LIMA1-212ENST00000552491 VDAC3Q9Y277 283 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms