RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 WDR82Q6UXN9 313 aa13.79□□□□□ -0.2
VPS29-204ENST00000548259 CBLL1Q75N03 491 aa13.79□□□□□ -0.2
VPS29-204ENST00000548259 MAP6Q96JE9 813 aa13.79□□□□□ -0.2
VPS29-204ENST00000548259 MICU1Q9BPX6 476 aa13.79□□□□□ -0.2
VPS29-204ENST00000548259 IFT27Q9BW83 186 aa13.79□□□□□ -0.2
VPS29-204ENST00000548259 MMP28Q9H239 520 aa13.79□□□□□ -0.2
VPS29-204ENST00000548259 DUX4Q9UBX2 424 aa13.79□□□□□ -0.2
VPS29-204ENST00000548259 N6AMT1Q9Y5N5 214 aa13.79□□□□□ -0.2
VPS29-204ENST00000548259 A0A1W2PPH5 198 aa13.78□□□□□ -0.2
VPS29-204ENST00000548259 ANXA2P2A6NMY6 339 aa13.78□□□□□ -0.2
VPS29-204ENST00000548259 ANGPTL7O43827 346 aa13.78□□□□□ -0.2
VPS29-204ENST00000548259 HIST1H1CP16403 213 aaKnown RBP13.78□□□□□ -0.2
VPS29-204ENST00000548259 RHCEP18577 417 aa13.78□□□□□ -0.2
VPS29-204ENST00000548259 LGALS4P56470 323 aa13.78□□□□□ -0.2
VPS29-204ENST00000548259 IL5RAQ01344 420 aa13.78□□□□□ -0.2
VPS29-204ENST00000548259 TIGD6Q17RP2 521 aa13.78□□□□□ -0.2
VPS29-204ENST00000548259 DUS3LQ96G46 650 aaKnown RBP13.78□□□□□ -0.2
VPS29-204ENST00000548259 KCNJ15Q99712 375 aa13.78□□□□□ -0.2
VPS29-204ENST00000548259 OCSTAMPQ9BR26 566 aa13.78□□□□□ -0.2
VPS29-204ENST00000548259 ZNF391Q9UJN7 358 aa13.78□□□□□ -0.2
VPS29-204ENST00000548259 TRBV23-1A0A0A0MS06 115 aa13.77□□□□□ -0.21
VPS29-204ENST00000548259 hCG_1809904A0A1W2PP81 198 aa13.77□□□□□ -0.21
VPS29-204ENST00000548259 A0A1W2PPE2 198 aa13.77□□□□□ -0.21
VPS29-204ENST00000548259 A0A1W2PR64 198 aa13.77□□□□□ -0.21
VPS29-204ENST00000548259 A0A1W2PRV1 198 aa13.77□□□□□ -0.21
VPS29-204ENST00000548259 CDIPTO14735 213 aa13.77□□□□□ -0.21
VPS29-204ENST00000548259 TBX1O43435 398 aa13.77□□□□□ -0.21
VPS29-204ENST00000548259 SERPINA1P01009 418 aa13.77□□□□□ -0.21
VPS29-204ENST00000548259 VSIG8P0DPA2 414 aa13.77□□□□□ -0.21
VPS29-204ENST00000548259 SLC15A1P46059 708 aa13.77□□□□□ -0.21
VPS29-204ENST00000548259 PRKXP51817 358 aa13.77□□□□□ -0.21
VPS29-204ENST00000548259 DLX1P56177 255 aa13.77□□□□□ -0.21
VPS29-204ENST00000548259 CAV3P56539 151 aa13.77□□□□□ -0.21
VPS29-204ENST00000548259 SMIM11AP58511 58 aa13.77□□□□□ -0.21
VPS29-204ENST00000548259 FXYD6P3P58550 94 aa13.77□□□□□ -0.21
VPS29-204ENST00000548259 CSNK2BP67870 215 aa13.77□□□□□ -0.21
VPS29-204ENST00000548259 ARSJQ5FYB0 599 aaPredicted RBP13.77□□□□□ -0.21
VPS29-204ENST00000548259 DEFB121Q5J5C9 76 aa13.77□□□□□ -0.21
VPS29-204ENST00000548259 C11orf53Q8IXP5 236 aa13.77□□□□□ -0.21
VPS29-204ENST00000548259 PROKR2Q8NFJ6 384 aa13.77□□□□□ -0.21
VPS29-204ENST00000548259 OR5T2Q8NGG2 359 aa13.77□□□□□ -0.21
VPS29-204ENST00000548259 FAM162AQ96A26 154 aa13.77□□□□□ -0.21
VPS29-204ENST00000548259 ATP6V1G3Q96LB4 118 aa13.77□□□□□ -0.21
VPS29-204ENST00000548259 CDCA4Q9BXL8 241 aa13.77□□□□□ -0.21
VPS29-204ENST00000548259 OR52D1Q9H346 318 aa13.77□□□□□ -0.21
VPS29-204ENST00000548259 HEXA-AS1Q9H8Q6 139 aa13.77□□□□□ -0.21
VPS29-204ENST00000548259 CENPMQ9NSP4 180 aa13.77□□□□□ -0.21
VPS29-204ENST00000548259 ADA2Q9NZK5 511 aa13.77□□□□□ -0.21
VPS29-204ENST00000548259 LOC100653049A0A140TA62 436 aa13.76□□□□□ -0.21
VPS29-204ENST00000548259 KRT34O76011 436 aa13.76□□□□□ -0.21
VPS29-204ENST00000548259 APOC1P02654 83 aa13.76□□□□□ -0.21
VPS29-204ENST00000548259 ALDOBP05062 364 aa13.76□□□□□ -0.21
VPS29-204ENST00000548259 CD28P10747 220 aa13.76□□□□□ -0.21
VPS29-204ENST00000548259 IFNGR2P38484 337 aa13.76□□□□□ -0.21
VPS29-204ENST00000548259 GMFBP60983 142 aa13.76□□□□□ -0.21
VPS29-204ENST00000548259 LIPEQ05469 1076 aa13.76□□□□□ -0.21
VPS29-204ENST00000548259 KLF10Q13118 480 aa13.76□□□□□ -0.21
VPS29-204ENST00000548259 ZBTB37Q5TC79 503 aa13.76□□□□□ -0.21
VPS29-204ENST00000548259 ZDHHC21Q8IVQ6 265 aa13.76□□□□□ -0.21
VPS29-204ENST00000548259 PAPD5Q8NDF8 572 aaKnown RBP13.76□□□□□ -0.21
VPS29-204ENST00000548259 CSNK2A3Q8NEV1 391 aa13.76□□□□□ -0.21
VPS29-204ENST00000548259 SDR9C7Q8NEX9 313 aa13.76□□□□□ -0.21
VPS29-204ENST00000548259 OR10Z1Q8NGY1 313 aa13.76□□□□□ -0.21
VPS29-204ENST00000548259 OR2T4Q8NH00 348 aa13.76□□□□□ -0.21
VPS29-204ENST00000548259 RORBQ92753 470 aa13.76□□□□□ -0.21
VPS29-204ENST00000548259 SPSB4Q96A44 273 aa13.76□□□□□ -0.21
VPS29-204ENST00000548259 WWC2-AS2Q96NR7 200 aa13.76□□□□□ -0.21
VPS29-204ENST00000548259 RAB3IPQ96QF0 476 aaPredicted RBP13.76□□□□□ -0.21
VPS29-204ENST00000548259 RTL8AQ9BWD3 113 aa13.76□□□□□ -0.21
VPS29-204ENST00000548259 PAPOLGQ9BWT3 736 aaKnown RBP13.76□□□□□ -0.21
VPS29-204ENST00000548259 ABCB9Q9NP78 766 aa13.76□□□□□ -0.21
VPS29-204ENST00000548259 MRPL22Q9NWU5 206 aaKnown RBP13.76□□□□□ -0.21
VPS29-204ENST00000548259 PITPNC1Q9UKF7 332 aa13.76□□□□□ -0.21
VPS29-204ENST00000548259 OR6C68A6NDL8 312 aa13.75□□□□□ -0.21
VPS29-204ENST00000548259 ZNF878C9JN71 531 aa13.75□□□□□ -0.21
VPS29-204ENST00000548259 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.75□□□□□ -0.21
VPS29-204ENST00000548259 NDUFAB1O14561 156 aa13.75□□□□□ -0.21
VPS29-204ENST00000548259 SIGLEC5O15389 551 aa13.75□□□□□ -0.21
VPS29-204ENST00000548259 EDF1O60869 148 aaKnown RBP13.75□□□□□ -0.21
VPS29-204ENST00000548259 SLC2A1P11166 492 aa13.75□□□□□ -0.21
VPS29-204ENST00000548259 GRB2P62993 217 aaKnown RBP13.75□□□□□ -0.21
VPS29-204ENST00000548259 ELF3P78545 371 aaPredicted RBP13.75□□□□□ -0.21
VPS29-204ENST00000548259 SPIBQ01892 262 aa13.75□□□□□ -0.21
VPS29-204ENST00000548259 CRIP3Q6Q6R5 217 aa13.75□□□□□ -0.21
VPS29-204ENST00000548259 ZNF788Q6ZQV5 615 aa13.75□□□□□ -0.21
VPS29-204ENST00000548259 SLC16A9Q7RTY1 509 aa13.75□□□□□ -0.21
VPS29-204ENST00000548259 DCXRQ7Z4W1 244 aa13.75□□□□□ -0.21
VPS29-204ENST00000548259 WDR86Q86TI4 376 aa13.75□□□□□ -0.21
VPS29-204ENST00000548259 CITED2Q99967 270 aaPredicted RBP13.75□□□□□ -0.21
VPS29-204ENST00000548259 PRSS22Q9GZN4 317 aa13.75□□□□□ -0.21
VPS29-204ENST00000548259 TLNRD1Q9H1K6 362 aa13.75□□□□□ -0.21
VPS29-204ENST00000548259 ABCB10Q9NRK6 738 aa13.75□□□□□ -0.21
VPS29-204ENST00000548259 SNTG1Q9NSN8 517 aa13.75□□□□□ -0.21
VPS29-204ENST00000548259 TRBV4-1A0A0J9YWV2 114 aa13.74□□□□□ -0.21
VPS29-204ENST00000548259 TMEM210A6NLX4 147 aa13.74□□□□□ -0.21
VPS29-204ENST00000548259 H3BUI4 141 aa13.74□□□□□ -0.21
VPS29-204ENST00000548259 DUS4LO95620 317 aaKnown RBP13.74□□□□□ -0.21
VPS29-204ENST00000548259 ANXA2P07355 339 aaKnown RBP13.74□□□□□ -0.21
VPS29-204ENST00000548259 ACAA1P09110 424 aaPredicted RBP13.74□□□□□ -0.21
VPS29-204ENST00000548259 PF4V1P10720 104 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms