RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 MYCNOSP40205 109 aa3.8□□□□□ -1.8
LIMS1-214ENST00000542845 MVDP53602 400 aa3.8□□□□□ -1.8
LIMS1-214ENST00000542845 CLNS1AP54105 237 aaKnown RBP3.8□□□□□ -1.8
LIMS1-214ENST00000542845 LCN6P62502 163 aa3.8□□□□□ -1.8
LIMS1-214ENST00000542845 SCRN3Q0VDG4 424 aa3.8□□□□□ -1.8
LIMS1-214ENST00000542845 SSX2Q16385 188 aa3.8□□□□□ -1.8
LIMS1-214ENST00000542845 AANATQ16613 207 aa3.8□□□□□ -1.8
LIMS1-214ENST00000542845 PCK2Q16822 640 aa3.8□□□□□ -1.8
LIMS1-214ENST00000542845 ZNF260Q3ZCT1 412 aa3.8□□□□□ -1.8
LIMS1-214ENST00000542845 GTDC1Q4AE62 458 aa3.8□□□□□ -1.8
LIMS1-214ENST00000542845 ABCA11PQ4W5N1 156 aa3.8□□□□□ -1.8
LIMS1-214ENST00000542845 ARMC4Q5T2S8 1044 aa3.8□□□□□ -1.8
LIMS1-214ENST00000542845 C9orf66Q5T8R8 295 aa3.8□□□□□ -1.8
LIMS1-214ENST00000542845 HCP5Q6MZN7 132 aa3.8□□□□□ -1.8
LIMS1-214ENST00000542845 C8orf74Q6P047 294 aa3.8□□□□□ -1.8
LIMS1-214ENST00000542845 MZT2AQ6P582 158 aa3.8□□□□□ -1.8
LIMS1-214ENST00000542845 C4orf33Q8N1A6 199 aa3.8□□□□□ -1.8
LIMS1-214ENST00000542845 PCYOX1LQ8NBM8 494 aa3.8□□□□□ -1.8
LIMS1-214ENST00000542845 KLHL30-AS1Q8NEE0 82 aa3.8□□□□□ -1.8
LIMS1-214ENST00000542845 OR5D13Q8NGL4 314 aa3.8□□□□□ -1.8
LIMS1-214ENST00000542845 OR1F12Q8NHA8 337 aa3.8□□□□□ -1.8
LIMS1-214ENST00000542845 NFKBIDQ8NI38 313 aa3.8□□□□□ -1.8
LIMS1-214ENST00000542845 BBS10Q8TAM1 723 aa3.8□□□□□ -1.8
LIMS1-214ENST00000542845 TCP10LQ8TDR4 215 aa3.8□□□□□ -1.8
LIMS1-214ENST00000542845 LRRC29Q8WV35 223 aa3.8□□□□□ -1.8
LIMS1-214ENST00000542845 CAPSLQ8WWF8 208 aa3.8□□□□□ -1.8
LIMS1-214ENST00000542845 ACOT11Q8WXI4 607 aaPredicted RBP3.8□□□□□ -1.8
LIMS1-214ENST00000542845 SLC35B4Q969S0 331 aa3.8□□□□□ -1.8
LIMS1-214ENST00000542845 APOBEC3DQ96AK3 386 aaPredicted RBP3.8□□□□□ -1.8
LIMS1-214ENST00000542845 TESCQ96BS2 214 aa3.8□□□□□ -1.8
LIMS1-214ENST00000542845 CDRT15Q96T59 188 aa3.8□□□□□ -1.8
LIMS1-214ENST00000542845 ADAT1Q9BUB4 502 aaKnown RBP3.8□□□□□ -1.8
LIMS1-214ENST00000542845 RAD21L1Q9H4I0 556 aa3.8□□□□□ -1.8
LIMS1-214ENST00000542845 HEXA-AS1Q9H8Q6 139 aa3.8□□□□□ -1.8
LIMS1-214ENST00000542845 SMURF2Q9HAU4 748 aa3.8□□□□□ -1.8
LIMS1-214ENST00000542845 TPT1P8Q9HAU6 139 aa3.8□□□□□ -1.8
LIMS1-214ENST00000542845 ELL3Q9HB65 397 aaPredicted RBP3.8□□□□□ -1.8
LIMS1-214ENST00000542845 KCNK9Q9NPC2 374 aa3.8□□□□□ -1.8
LIMS1-214ENST00000542845 PSMC3IPQ9P2W1 217 aaPredicted RBP3.8□□□□□ -1.8
LIMS1-214ENST00000542845 KAAG1Q9UBP8 84 aa3.8□□□□□ -1.8
LIMS1-214ENST00000542845 ZNF229Q9UJW7 825 aa3.8□□□□□ -1.8
LIMS1-214ENST00000542845 SLC7A7Q9UM01 511 aa3.8□□□□□ -1.8
LIMS1-214ENST00000542845 SLC45A2Q9UMX9 530 aa3.8□□□□□ -1.8
LIMS1-214ENST00000542845 HILPDAQ9Y5L2 63 aa3.8□□□□□ -1.8
LIMS1-214ENST00000542845 STAB2Q8WWQ8 2551 aa3.8□□□□□ -1.8
LIMS1-214ENST00000542845 HECTD4Q9Y4D8 3996 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 LOC102723971A0A1B0GUV8 181 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 PSMB11A5LHX3 300 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 GMNCA6NCL1 334 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 GGT3PA6NGU5 568 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 CENPBD1B2RD01 187 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 SEC14L6B5MCN3 397 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 F5H5K5 113 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 RER1O15258 196 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 RGS10O43665 173 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 CHP2O43745 196 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 GMDSO60547 372 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 LCATP04180 440 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 ARG1P05089 322 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 ASAH2BP0C7U1 165 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 NR2C1P13056 603 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 KRT4P19013 534 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 BGNP21810 368 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 IL12AP29459 219 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 AQP1P29972 269 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 GABRA2P47869 451 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 CENPAP49450 140 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 ZNF133P52736 654 aaPredicted RBP3.79□□□□□ -1.8
LIMS1-214ENST00000542845 CAPZA1P52907 286 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 GP2P55259 537 aaKnown RBP3.79□□□□□ -1.8
LIMS1-214ENST00000542845 SLC34A1Q06495 639 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 DYNC1I2Q13409 638 aaKnown RBP3.79□□□□□ -1.8
LIMS1-214ENST00000542845 GK2Q14410 553 aaPredicted RBP3.79□□□□□ -1.8
LIMS1-214ENST00000542845 MLANAQ16655 118 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 CCDC92Q53HC0 331 aaPredicted RBP3.79□□□□□ -1.8
LIMS1-214ENST00000542845 ENTPD8Q5MY95 495 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 C6orf10Q5SRN2 563 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 TEX36Q5VZQ5 186 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 ZNF782Q6ZMW2 699 aaPredicted RBP3.79□□□□□ -1.8
LIMS1-214ENST00000542845 PGAP1Q75T13 922 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 MRPL21Q7Z2W9 205 aaKnown RBP3.79□□□□□ -1.8
LIMS1-214ENST00000542845 DHDDSQ86SQ9 333 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 ZNF329Q86UD4 541 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 NAA40Q86UY6 237 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 SATL1Q86VE3 508 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 KRT73Q86Y46 540 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 RBM45Q8IUH3 476 aaKnown RBP3.79□□□□□ -1.8
LIMS1-214ENST00000542845 SMYD1Q8NB12 490 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 OR5M8Q8NGP6 311 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 PFN4Q8NHR9 129 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 VPS33AQ96AX1 596 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 FMO2Q99518 471 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 ZBTB18Q99592 522 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 SPATA25Q9BR10 227 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 SPATA5L1Q9BVQ7 753 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 TSPYL1Q9H0U9 437 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 TXNIPQ9H3M7 391 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 EDA2RQ9HAV5 297 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 SLCO1B3Q9NPD5 702 aa3.79□□□□□ -1.8
LIMS1-214ENST00000542845 POLE4Q9NR33 117 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms