RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 KRCC1Q9NPI7 259 aaPredicted RBP14.51□□□□□ -0.09
CLSTN3-214ENST00000542663 NECAP2Q9NVZ3 263 aa14.51□□□□□ -0.09
CLSTN3-214ENST00000542663 FAM32AQ9Y421 112 aaKnown RBP14.51□□□□□ -0.09
CLSTN3-214ENST00000542663 ANKRD30BLA7E2S9 258 aa14.5□□□□□ -0.09
CLSTN3-214ENST00000542663 XRCC2O43543 280 aa14.5□□□□□ -0.09
CLSTN3-214ENST00000542663 PAX6P26367 422 aa14.5□□□□□ -0.09
CLSTN3-214ENST00000542663 NOS3P29474 1203 aa14.5□□□□□ -0.09
CLSTN3-214ENST00000542663 DDOSTP39656 456 aa14.5□□□□□ -0.09
CLSTN3-214ENST00000542663 KHDRBS1Q07666 443 aaKnown RBP eCLIP14.5□□□□□ -0.09
CLSTN3-214ENST00000542663 SLC35F1Q5T1Q4 408 aa14.5□□□□□ -0.09
CLSTN3-214ENST00000542663 ZNF788Q6ZQV5 615 aa14.5□□□□□ -0.09
CLSTN3-214ENST00000542663 SLC16A9Q7RTY1 509 aa14.5□□□□□ -0.09
CLSTN3-214ENST00000542663 DCXRQ7Z4W1 244 aa14.5□□□□□ -0.09
CLSTN3-214ENST00000542663 ZDHHC21Q8IVQ6 265 aa14.5□□□□□ -0.09
CLSTN3-214ENST00000542663 OR2T6Q8NHC8 308 aa14.5□□□□□ -0.09
CLSTN3-214ENST00000542663 FAM162AQ96A26 154 aa14.5□□□□□ -0.09
CLSTN3-214ENST00000542663 KCNJ15Q99712 375 aa14.5□□□□□ -0.09
CLSTN3-214ENST00000542663 COPS4Q9BT78 406 aa14.5□□□□□ -0.09
CLSTN3-214ENST00000542663 WDR13Q9H1Z4 485 aa14.5□□□□□ -0.09
CLSTN3-214ENST00000542663 RANBP3Q9H6Z4 567 aaPredicted RBP14.5□□□□□ -0.09
CLSTN3-214ENST00000542663 METTL8Q9H825 291 aaKnown RBP14.5□□□□□ -0.09
CLSTN3-214ENST00000542663 SNTG1Q9NSN8 517 aa14.5□□□□□ -0.09
CLSTN3-214ENST00000542663 HAO2Q9NYQ3 351 aa14.5□□□□□ -0.09
CLSTN3-214ENST00000542663 N6AMT1Q9Y5N5 214 aa14.5□□□□□ -0.09
CLSTN3-214ENST00000542663 COMMD3-BMI1R4GMX3 469 aa14.5□□□□□ -0.09
CLSTN3-214ENST00000542663 DNAH9Q9NYC9 4486 aa14.49□□□□□ -0.09
CLSTN3-214ENST00000542663 HMGB1P1B2RPK0 211 aaPredicted RBP14.49□□□□□ -0.09
CLSTN3-214ENST00000542663 M0R1W7 72 aa14.49□□□□□ -0.09
CLSTN3-214ENST00000542663 CDIPTO14735 213 aa14.49□□□□□ -0.09
CLSTN3-214ENST00000542663 IDH3BO43837 385 aa14.49□□□□□ -0.09
CLSTN3-214ENST00000542663 XPNPEP2O43895 674 aa14.49□□□□□ -0.09
CLSTN3-214ENST00000542663 CHST1O43916 411 aa14.49□□□□□ -0.09
CLSTN3-214ENST00000542663 VSIG10L2P0DP72 767 aa14.49□□□□□ -0.09
CLSTN3-214ENST00000542663 DGUOKQ16854 277 aa14.49□□□□□ -0.09
CLSTN3-214ENST00000542663 KLHL12Q53G59 568 aa14.49□□□□□ -0.09
CLSTN3-214ENST00000542663 NCR3LG1Q68D85 454 aa14.49□□□□□ -0.09
CLSTN3-214ENST00000542663 SGCDQ92629 289 aa14.49□□□□□ -0.09
CLSTN3-214ENST00000542663 PHF21AQ96BD5 680 aa14.49□□□□□ -0.09
CLSTN3-214ENST00000542663 GAFA1Q96PS6 74 aa14.49□□□□□ -0.09
CLSTN3-214ENST00000542663 DNTTIP1Q9H147 329 aa14.49□□□□□ -0.09
CLSTN3-214ENST00000542663 MEGF9Q9H1U4 602 aa14.49□□□□□ -0.09
CLSTN3-214ENST00000542663 MMP28Q9H239 520 aa14.49□□□□□ -0.09
CLSTN3-214ENST00000542663 CAPN7Q9Y6W3 813 aa14.49□□□□□ -0.09
CLSTN3-214ENST00000542663 DSCAML1Q8TD84 2053 aa14.48□□□□□ -0.09
CLSTN3-214ENST00000542663 ADARB2-AS1A8MUL3 147 aa14.48□□□□□ -0.09
CLSTN3-214ENST00000542663 TIPRLO75663 272 aa14.48□□□□□ -0.09
CLSTN3-214ENST00000542663 NAA10P41227 235 aaPredicted RBP14.48□□□□□ -0.09
CLSTN3-214ENST00000542663 GMFBP60983 142 aa14.48□□□□□ -0.09
CLSTN3-214ENST00000542663 MXRA7P84157 204 aa14.48□□□□□ -0.09
CLSTN3-214ENST00000542663 LRRC75BQ2VPJ9 315 aa14.48□□□□□ -0.09
CLSTN3-214ENST00000542663 NSUN5P1Q3KNT7 163 aa14.48□□□□□ -0.09
CLSTN3-214ENST00000542663 CYB561A3Q8NBI2 242 aa14.48□□□□□ -0.09
CLSTN3-214ENST00000542663 PROKR2Q8NFJ6 384 aa14.48□□□□□ -0.09
CLSTN3-214ENST00000542663 OR51L1Q8NGJ5 315 aa14.48□□□□□ -0.09
CLSTN3-214ENST00000542663 OR51G2Q8NGK0 314 aa14.48□□□□□ -0.09
CLSTN3-214ENST00000542663 OR4C15Q8NGM1 316 aa14.48□□□□□ -0.09
CLSTN3-214ENST00000542663 OR9Q1Q8NGQ5 310 aa14.48□□□□□ -0.09
CLSTN3-214ENST00000542663 SGK3Q96BR1 496 aa14.48□□□□□ -0.09
CLSTN3-214ENST00000542663 SLAMF6Q96DU3 332 aa14.48□□□□□ -0.09
CLSTN3-214ENST00000542663 CLPTM1LQ96KA5 538 aa14.48□□□□□ -0.09
CLSTN3-214ENST00000542663 RAB3IPQ96QF0 476 aaPredicted RBP14.48□□□□□ -0.09
CLSTN3-214ENST00000542663 SLC25A10Q9UBX3 287 aaPredicted RBP14.48□□□□□ -0.09
CLSTN3-214ENST00000542663 ZNF391Q9UJN7 358 aa14.48□□□□□ -0.09
CLSTN3-214ENST00000542663 hCG_38984A0A1B0GV85 526 aa14.47□□□□□ -0.09
CLSTN3-214ENST00000542663 TBX1O43435 398 aa14.47□□□□□ -0.09
CLSTN3-214ENST00000542663 GSSP48637 474 aa14.47□□□□□ -0.09
CLSTN3-214ENST00000542663 VAX1Q5SQQ9 334 aa14.47□□□□□ -0.09
CLSTN3-214ENST00000542663 PGBD2Q6P3X8 592 aa14.47□□□□□ -0.09
CLSTN3-214ENST00000542663 PRSS45Q7RTY3 260 aa14.47□□□□□ -0.09
CLSTN3-214ENST00000542663 ANGPTL6Q8NI99 470 aa14.47□□□□□ -0.09
CLSTN3-214ENST00000542663 PIFOQ8TCI5 191 aa14.47□□□□□ -0.09
CLSTN3-214ENST00000542663 DUS3LQ96G46 650 aaKnown RBP14.47□□□□□ -0.09
CLSTN3-214ENST00000542663 REEP6Q96HR9 211 aa14.47□□□□□ -0.09
CLSTN3-214ENST00000542663 KCTD14Q9BQ13 255 aaPredicted RBP14.47□□□□□ -0.09
CLSTN3-214ENST00000542663 FAM234AQ9H0X4 552 aa14.47□□□□□ -0.09
CLSTN3-214ENST00000542663 ELL3Q9HB65 397 aaPredicted RBP14.47□□□□□ -0.09
CLSTN3-214ENST00000542663 CENPMQ9NSP4 180 aa14.47□□□□□ -0.09
CLSTN3-214ENST00000542663 SERTAD4Q9NUC0 356 aa14.47□□□□□ -0.09
CLSTN3-214ENST00000542663 FGFR1OP2Q9NVK5 253 aa14.47□□□□□ -0.09
CLSTN3-214ENST00000542663 A0A1W2PQ09 198 aa14.46□□□□□ -0.09
CLSTN3-214ENST00000542663 ZNF878C9JN71 531 aa14.46□□□□□ -0.09
CLSTN3-214ENST00000542663 SLC22A2O15244 555 aa14.46□□□□□ -0.09
CLSTN3-214ENST00000542663 FBXO24O75426 580 aa14.46□□□□□ -0.09
CLSTN3-214ENST00000542663 GADD45GO95257 159 aa14.46□□□□□ -0.09
CLSTN3-214ENST00000542663 SPARCP09486 303 aa14.46□□□□□ -0.09
CLSTN3-214ENST00000542663 CD28P10747 220 aa14.46□□□□□ -0.09
CLSTN3-214ENST00000542663 CAV3P56539 151 aa14.46□□□□□ -0.09
CLSTN3-214ENST00000542663 HABP2Q14520 560 aaPredicted RBP14.46□□□□□ -0.09
CLSTN3-214ENST00000542663 TAF13Q15543 124 aa14.46□□□□□ -0.09
CLSTN3-214ENST00000542663 FOXB2Q5VYV0 432 aa14.46□□□□□ -0.09
CLSTN3-214ENST00000542663 OR10Z1Q8NGY1 313 aa14.46□□□□□ -0.09
CLSTN3-214ENST00000542663 RP9Q8TA86 221 aaKnown RBP14.46□□□□□ -0.09
CLSTN3-214ENST00000542663 WIPF2Q8TF74 440 aaPredicted RBP14.46□□□□□ -0.09
CLSTN3-214ENST00000542663 HOPXQ9BPY8 73 aaPredicted RBP14.46□□□□□ -0.09
CLSTN3-214ENST00000542663 ZNF702PQ9H963 129 aa14.46□□□□□ -0.09
CLSTN3-214ENST00000542663 DCAF13Q9NV06 445 aaKnown RBP14.46□□□□□ -0.09
CLSTN3-214ENST00000542663 SF3B6Q9Y3B4 125 aaKnown RBP14.46□□□□□ -0.09
CLSTN3-214ENST00000542663 RHBDD3Q9Y3P4 386 aa14.46□□□□□ -0.09
CLSTN3-214ENST00000542663 NKX6-3A6NJ46 265 aa14.45□□□□□ -0.1
CLSTN3-214ENST00000542663 SIGLEC5O15389 551 aa14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms