RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 DCTN5Q9BTE1 182 aa12.65□□□□□ -0.38
CLSTN3-213ENST00000541953 NMNAT2Q9BZQ4 307 aa12.65□□□□□ -0.38
CLSTN3-213ENST00000541953 DPAGT1Q9H3H5 408 aa12.65□□□□□ -0.38
CLSTN3-213ENST00000541953 GORASP2Q9H8Y8 452 aa12.65□□□□□ -0.38
CLSTN3-213ENST00000541953 ELL3Q9HB65 397 aaPredicted RBP12.65□□□□□ -0.38
CLSTN3-213ENST00000541953 SPAG4Q9NPE6 437 aa12.65□□□□□ -0.38
CLSTN3-213ENST00000541953 DNAJC27Q9NZQ0 273 aa12.65□□□□□ -0.38
CLSTN3-213ENST00000541953 FOXJ3Q9UPW0 622 aa12.65□□□□□ -0.38
CLSTN3-213ENST00000541953 FAM96BQ9Y3D0 163 aa12.65□□□□□ -0.38
CLSTN3-213ENST00000541953 RHBDD3Q9Y3P4 386 aa12.65□□□□□ -0.38
CLSTN3-213ENST00000541953 PLXNB1O43157 2135 aa12.65□□□□□ -0.38
CLSTN3-213ENST00000541953 DNAH9Q9NYC9 4486 aa12.65□□□□□ -0.38
CLSTN3-213ENST00000541953 ZNF593O00488 134 aaPredicted RBP12.64□□□□□ -0.39
CLSTN3-213ENST00000541953 ARPC2O15144 300 aa12.64□□□□□ -0.39
CLSTN3-213ENST00000541953 MUC1P15941 1255 aaPredicted RBP12.64□□□□□ -0.39
CLSTN3-213ENST00000541953 SPI1P17947 270 aa12.64□□□□□ -0.39
CLSTN3-213ENST00000541953 DGUOKQ16854 277 aa12.64□□□□□ -0.39
CLSTN3-213ENST00000541953 MICBQ29980 383 aa12.64□□□□□ -0.39
CLSTN3-213ENST00000541953 GFOD2Q3B7J2 385 aa12.64□□□□□ -0.39
CLSTN3-213ENST00000541953 ZNF770Q6IQ21 691 aaPredicted RBP12.64□□□□□ -0.39
CLSTN3-213ENST00000541953 SPERTQ8NA61 448 aa12.64□□□□□ -0.39
CLSTN3-213ENST00000541953 OR2T4Q8NH00 348 aa12.64□□□□□ -0.39
CLSTN3-213ENST00000541953 OR8S1Q8NH09 359 aa12.64□□□□□ -0.39
CLSTN3-213ENST00000541953 GNPDA2Q8TDQ7 276 aa12.64□□□□□ -0.39
CLSTN3-213ENST00000541953 RORBQ92753 470 aa12.64□□□□□ -0.39
CLSTN3-213ENST00000541953 RPL3LQ92901 407 aaKnown RBP12.64□□□□□ -0.39
CLSTN3-213ENST00000541953 ITPKCQ96DU7 683 aa12.64□□□□□ -0.39
CLSTN3-213ENST00000541953 GAFA1Q96PS6 74 aa12.64□□□□□ -0.39
CLSTN3-213ENST00000541953 TLNRD1Q9H1K6 362 aa12.64□□□□□ -0.39
CLSTN3-213ENST00000541953 PPA2Q9H2U2 334 aa12.64□□□□□ -0.39
CLSTN3-213ENST00000541953 TOR3AQ9H497 397 aa12.64□□□□□ -0.39
CLSTN3-213ENST00000541953 MED20Q9H944 212 aa12.64□□□□□ -0.39
CLSTN3-213ENST00000541953 RNPEPL1Q9HAU8 725 aa12.64□□□□□ -0.39
CLSTN3-213ENST00000541953 C14orf119Q9NWQ9 140 aa12.64□□□□□ -0.39
CLSTN3-213ENST00000541953 VNN3Q9NY84 501 aa12.64□□□□□ -0.39
CLSTN3-213ENST00000541953 LYVE1Q9Y5Y7 322 aa12.64□□□□□ -0.39
CLSTN3-213ENST00000541953 RYR3Q15413 4870 aa12.63□□□□□ -0.39
CLSTN3-213ENST00000541953 NBEAL2Q6ZNJ1 2754 aa12.63□□□□□ -0.39
CLSTN3-213ENST00000541953 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.63□□□□□ -0.39
CLSTN3-213ENST00000541953 MEIOCA2RUB1 952 aa12.63□□□□□ -0.39
CLSTN3-213ENST00000541953 ANKRD30BLA7E2S9 258 aa12.63□□□□□ -0.39
CLSTN3-213ENST00000541953 ZNF878C9JN71 531 aa12.63□□□□□ -0.39
CLSTN3-213ENST00000541953 XRCC2O43543 280 aa12.63□□□□□ -0.39
CLSTN3-213ENST00000541953 CCDC22O60826 627 aa12.63□□□□□ -0.39
CLSTN3-213ENST00000541953 SOX14O95416 240 aa12.63□□□□□ -0.39
CLSTN3-213ENST00000541953 FABP3P05413 133 aa12.63□□□□□ -0.39
CLSTN3-213ENST00000541953 ANXA2P07355 339 aaKnown RBP12.63□□□□□ -0.39
CLSTN3-213ENST00000541953 ACKR3P25106 362 aa12.63□□□□□ -0.39
CLSTN3-213ENST00000541953 GSK3AP49840 483 aa12.63□□□□□ -0.39
CLSTN3-213ENST00000541953 MXRA7P84157 204 aa12.63□□□□□ -0.39
CLSTN3-213ENST00000541953 C2orf68Q2NKX9 166 aa12.63□□□□□ -0.39
CLSTN3-213ENST00000541953 C1orf122Q6ZSJ8 110 aa12.63□□□□□ -0.39
CLSTN3-213ENST00000541953 FAM57BQ71RH2 274 aa12.63□□□□□ -0.39
CLSTN3-213ENST00000541953 OR4C15Q8NGM1 316 aa12.63□□□□□ -0.39
CLSTN3-213ENST00000541953 C8orf46Q8TAG6 207 aa12.63□□□□□ -0.39
CLSTN3-213ENST00000541953 LRTOMTQ8WZ04 291 aa12.63□□□□□ -0.39
CLSTN3-213ENST00000541953 H1FXQ92522 213 aaKnown RBP12.63□□□□□ -0.39
CLSTN3-213ENST00000541953 IL20Q9NYY1 176 aa12.63□□□□□ -0.39
CLSTN3-213ENST00000541953 NDUFAB1O14561 156 aa12.62□□□□□ -0.39
CLSTN3-213ENST00000541953 AKR7A2O43488 359 aa12.62□□□□□ -0.39
CLSTN3-213ENST00000541953 NDUFB3O43676 98 aa12.62□□□□□ -0.39
CLSTN3-213ENST00000541953 GASTP01350 101 aa12.62□□□□□ -0.39
CLSTN3-213ENST00000541953 CSF1P09603 554 aa12.62□□□□□ -0.39
CLSTN3-213ENST00000541953 ZNF121P58317 390 aaPredicted RBP12.62□□□□□ -0.39
CLSTN3-213ENST00000541953 SMIM11AP58511 58 aa12.62□□□□□ -0.39
CLSTN3-213ENST00000541953 TAF13Q15543 124 aa12.62□□□□□ -0.39
CLSTN3-213ENST00000541953 LY6EQ16553 131 aa12.62□□□□□ -0.39
CLSTN3-213ENST00000541953 TIGD6Q17RP2 521 aa12.62□□□□□ -0.39
CLSTN3-213ENST00000541953 Q6ZPA2 131 aa12.62□□□□□ -0.39
CLSTN3-213ENST00000541953 LINC00471Q8N535 108 aa12.62□□□□□ -0.39
CLSTN3-213ENST00000541953 OR52L1Q8NGH7 329 aa12.62□□□□□ -0.39
CLSTN3-213ENST00000541953 OR6K6Q8NGW6 343 aa12.62□□□□□ -0.39
CLSTN3-213ENST00000541953 HPSE2Q8WWQ2 592 aa12.62□□□□□ -0.39
CLSTN3-213ENST00000541953 PAPOLGQ9BWT3 736 aaKnown RBP12.62□□□□□ -0.39
CLSTN3-213ENST00000541953 OPA3Q9H6K4 179 aa12.62□□□□□ -0.39
CLSTN3-213ENST00000541953 IL1RAPQ9NPH3 570 aa12.62□□□□□ -0.39
CLSTN3-213ENST00000541953 BRD7Q9NPI1 651 aa12.62□□□□□ -0.39
CLSTN3-213ENST00000541953 TBC1D23Q9NUY8 699 aa12.62□□□□□ -0.39
CLSTN3-213ENST00000541953 ARMC1Q9NVT9 282 aa12.62□□□□□ -0.39
CLSTN3-213ENST00000541953 HAO2Q9NYQ3 351 aa12.62□□□□□ -0.39
CLSTN3-213ENST00000541953 TAS2R1Q9NYW7 299 aa12.62□□□□□ -0.39
CLSTN3-213ENST00000541953 CD300AQ9UGN4 299 aa12.62□□□□□ -0.39
CLSTN3-213ENST00000541953 ZNF391Q9UJN7 358 aa12.62□□□□□ -0.39
CLSTN3-213ENST00000541953 H3BUX3 64 aa12.61□□□□□ -0.39
CLSTN3-213ENST00000541953 HSD17B1P14061 328 aa12.61□□□□□ -0.39
CLSTN3-213ENST00000541953 FMO3P31513 532 aa12.61□□□□□ -0.39
CLSTN3-213ENST00000541953 TGFBR2P37173 567 aa12.61□□□□□ -0.39
CLSTN3-213ENST00000541953 EFNB2P52799 333 aa12.61□□□□□ -0.39
CLSTN3-213ENST00000541953 EIF2B1Q14232 305 aaKnown RBP12.61□□□□□ -0.39
CLSTN3-213ENST00000541953 C11orf91Q3C1V1 193 aa12.61□□□□□ -0.39
CLSTN3-213ENST00000541953 DMRTC1Q5HYR2 192 aa12.61□□□□□ -0.39
CLSTN3-213ENST00000541953 TEX30Q5JUR7 227 aa12.61□□□□□ -0.39
CLSTN3-213ENST00000541953 ATPAF1Q5TC12 328 aaPredicted RBP12.61□□□□□ -0.39
CLSTN3-213ENST00000541953 SAMD5Q5TGI4 173 aa12.61□□□□□ -0.39
CLSTN3-213ENST00000541953 CRIP3Q6Q6R5 217 aa12.61□□□□□ -0.39
CLSTN3-213ENST00000541953 ZNF788Q6ZQV5 615 aa12.61□□□□□ -0.39
CLSTN3-213ENST00000541953 SLC36A1Q7Z2H8 476 aa12.61□□□□□ -0.39
CLSTN3-213ENST00000541953 LYG1Q8N1E2 194 aa12.61□□□□□ -0.39
CLSTN3-213ENST00000541953 ANGPTL6Q8NI99 470 aa12.61□□□□□ -0.39
CLSTN3-213ENST00000541953 LYZL4Q96KX0 146 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms