RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 SPATA46Q5T0L3 261 aa9.01□□□□□ -0.97
VPS33A-204ENST00000540669 HIST2H2BCQ6DN03 193 aa9.01□□□□□ -0.97
VPS33A-204ENST00000540669 RGS7BPQ6MZT1 257 aaPredicted RBP9.01□□□□□ -0.97
VPS33A-204ENST00000540669 Q6ZR03 302 aa9.01□□□□□ -0.97
VPS33A-204ENST00000540669 PGAP1Q75T13 922 aa9.01□□□□□ -0.97
VPS33A-204ENST00000540669 SATL1Q86VE3 508 aa9.01□□□□□ -0.97
VPS33A-204ENST00000540669 LRP11Q86VZ4 500 aa9.01□□□□□ -0.97
VPS33A-204ENST00000540669 OR5AS1Q8N127 324 aa9.01□□□□□ -0.97
VPS33A-204ENST00000540669 HPSE2Q8WWQ2 592 aa9.01□□□□□ -0.97
VPS33A-204ENST00000540669 RPL3LQ92901 407 aaKnown RBP9.01□□□□□ -0.97
VPS33A-204ENST00000540669 PIGTQ969N2 578 aa9.01□□□□□ -0.97
VPS33A-204ENST00000540669 PIK3IP1Q96FE7 263 aa9.01□□□□□ -0.97
VPS33A-204ENST00000540669 OR14A2Q96R54 314 aa9.01□□□□□ -0.97
VPS33A-204ENST00000540669 DHRS9Q9BPW9 319 aa9.01□□□□□ -0.97
VPS33A-204ENST00000540669 SLC30A2Q9BRI3 323 aa9.01□□□□□ -0.97
VPS33A-204ENST00000540669 PLEKHF2Q9H8W4 249 aa9.01□□□□□ -0.97
VPS33A-204ENST00000540669 MRPL15Q9P015 296 aaKnown RBP9.01□□□□□ -0.97
VPS33A-204ENST00000540669 STUB1Q9UNE7 303 aa9.01□□□□□ -0.97
VPS33A-204ENST00000540669 SPEF1Q9Y4P9 236 aa9.01□□□□□ -0.97
VPS33A-204ENST00000540669 NAV2Q8IVL1 2488 aa9□□□□□ -0.97
VPS33A-204ENST00000540669 CSMD2Q7Z408 3487 aa9□□□□□ -0.97
VPS33A-204ENST00000540669 TRAV8-7A0A075B6U6 113 aa9□□□□□ -0.97
VPS33A-204ENST00000540669 IGKV1-9A0A0C4DH69 117 aa9□□□□□ -0.97
VPS33A-204ENST00000540669 ZNF816-ZNF321PA0A0X1KG74 233 aa9□□□□□ -0.97
VPS33A-204ENST00000540669 PNMA8CA0A1B0GUJ8 204 aa9□□□□□ -0.97
VPS33A-204ENST00000540669 ZNF701M0R085 212 aaPredicted RBP9□□□□□ -0.97
VPS33A-204ENST00000540669 HS3ST1O14792 307 aa9□□□□□ -0.97
VPS33A-204ENST00000540669 MLNRO43193 412 aa9□□□□□ -0.97
VPS33A-204ENST00000540669 TBX1O43435 398 aa9□□□□□ -0.97
VPS33A-204ENST00000540669 MTRF1O75570 445 aaKnown RBP9□□□□□ -0.97
VPS33A-204ENST00000540669 ATE1O95260 518 aa9□□□□□ -0.97
VPS33A-204ENST00000540669 FAHP16930 419 aa9□□□□□ -0.97
VPS33A-204ENST00000540669 MAGEB1P43366 347 aa9□□□□□ -0.97
VPS33A-204ENST00000540669 KLF3P57682 345 aaPredicted RBP9□□□□□ -0.97
VPS33A-204ENST00000540669 ZNF718Q3SXZ3 478 aa9□□□□□ -0.97
VPS33A-204ENST00000540669 FAM27D1Q5T7N8 215 aa9□□□□□ -0.97
VPS33A-204ENST00000540669 FOXB2Q5VYV0 432 aa9□□□□□ -0.97
VPS33A-204ENST00000540669 SLC22A25Q6T423 547 aa9□□□□□ -0.97
VPS33A-204ENST00000540669 MRPL21Q7Z2W9 205 aaKnown RBP9□□□□□ -0.97
VPS33A-204ENST00000540669 ZNF611Q8N823 705 aa9□□□□□ -0.97
VPS33A-204ENST00000540669 CSNK2A3Q8NEV1 391 aa9□□□□□ -0.97
VPS33A-204ENST00000540669 PP6455Q8WZ26 134 aa9□□□□□ -0.97
VPS33A-204ENST00000540669 TMEM106AQ96A25 262 aa9□□□□□ -0.97
VPS33A-204ENST00000540669 CMBLQ96DG6 245 aa9□□□□□ -0.97
VPS33A-204ENST00000540669 ITPKCQ96DU7 683 aa9□□□□□ -0.97
VPS33A-204ENST00000540669 FAM71F1Q96KD3 344 aaPredicted RBP9□□□□□ -0.97
VPS33A-204ENST00000540669 NAA50Q9GZZ1 169 aaKnown RBP9□□□□□ -0.97
VPS33A-204ENST00000540669 OR51E2Q9H255 320 aa9□□□□□ -0.97
VPS33A-204ENST00000540669 OR51B6Q9H340 312 aa9□□□□□ -0.97
VPS33A-204ENST00000540669 PLK3Q9H4B4 646 aa9□□□□□ -0.97
VPS33A-204ENST00000540669 TXNL4BQ9NX01 149 aaKnown RBP9□□□□□ -0.97
VPS33A-204ENST00000540669 CEPT1Q9Y6K0 416 aa9□□□□□ -0.97
VPS33A-204ENST00000540669 AKAP9Q99996 3911 aa8.99□□□□□ -0.97
VPS33A-204ENST00000540669 TRAV1-2A0A0B4J238 106 aa8.99□□□□□ -0.97
VPS33A-204ENST00000540669 A0A0G2JK05 382 aa8.99□□□□□ -0.97
VPS33A-204ENST00000540669 A6NHS1 94 aa8.99□□□□□ -0.97
VPS33A-204ENST00000540669 ZSCAN5BA6NJL1 495 aa8.99□□□□□ -0.97
VPS33A-204ENST00000540669 SERPINA3P01011 423 aa8.99□□□□□ -0.97
VPS33A-204ENST00000540669 CD8AP01732 235 aa8.99□□□□□ -0.97
VPS33A-204ENST00000540669 OCM2P0CE71 109 aa8.99□□□□□ -0.97
VPS33A-204ENST00000540669 SELEP16581 610 aa8.99□□□□□ -0.97
VPS33A-204ENST00000540669 ADRA2CP18825 462 aa8.99□□□□□ -0.97
VPS33A-204ENST00000540669 MAPK3P27361 379 aaPredicted RBP8.99□□□□□ -0.97
VPS33A-204ENST00000540669 APOBEC3AP31941 199 aaPredicted RBP8.99□□□□□ -0.97
VPS33A-204ENST00000540669 MAP2K3P46734 347 aa8.99□□□□□ -0.97
VPS33A-204ENST00000540669 TIMM50Q3ZCQ8 353 aa8.99□□□□□ -0.97
VPS33A-204ENST00000540669 ACSM3Q53FZ2 586 aa8.99□□□□□ -0.97
VPS33A-204ENST00000540669 OR2T2Q6IF00 324 aa8.99□□□□□ -0.97
VPS33A-204ENST00000540669 GPR141Q7Z602 305 aa8.99□□□□□ -0.97
VPS33A-204ENST00000540669 LRRTM1Q86UE6 522 aa8.99□□□□□ -0.97
VPS33A-204ENST00000540669 SEMA6DQ8NFY4 1073 aa8.99□□□□□ -0.97
VPS33A-204ENST00000540669 OR8G5Q8NG78 346 aa8.99□□□□□ -0.97
VPS33A-204ENST00000540669 ZNF420Q8TAQ5 688 aaPredicted RBP8.99□□□□□ -0.97
VPS33A-204ENST00000540669 SYNPRQ8TBG9 265 aa8.99□□□□□ -0.97
VPS33A-204ENST00000540669 GFI1Q99684 422 aa8.99□□□□□ -0.97
VPS33A-204ENST00000540669 CENPOQ9BU64 300 aa8.99□□□□□ -0.97
VPS33A-204ENST00000540669 TMED9Q9BVK6 235 aa8.99□□□□□ -0.97
VPS33A-204ENST00000540669 CLEC4MQ9H2X3 399 aaPredicted RBP8.99□□□□□ -0.97
VPS33A-204ENST00000540669 GTF2A1LQ9UNN4 478 aa8.99□□□□□ -0.97
VPS33A-204ENST00000540669 FOXJ3Q9UPW0 622 aa8.99□□□□□ -0.97
VPS33A-204ENST00000540669 DHDHQ9UQ10 334 aa8.99□□□□□ -0.97
VPS33A-204ENST00000540669 CMAHPQ9Y471 501 aa8.99□□□□□ -0.97
VPS33A-204ENST00000540669 DSCAMO60469 2012 aa8.98□□□□□ -0.97
VPS33A-204ENST00000540669 SMIM31A0A1B0GVY4 71 aa8.98□□□□□ -0.97
VPS33A-204ENST00000540669 ANKRD61A6NGH8 418 aa8.98□□□□□ -0.97
VPS33A-204ENST00000540669 B9A039 149 aa8.98□□□□□ -0.97
VPS33A-204ENST00000540669 CD55P08174 381 aa8.98□□□□□ -0.97
VPS33A-204ENST00000540669 OR4A8P0C604 315 aa8.98□□□□□ -0.97
VPS33A-204ENST00000540669 PRF1P14222 555 aa8.98□□□□□ -0.97
VPS33A-204ENST00000540669 TMBIM6P55061 237 aa8.98□□□□□ -0.97
VPS33A-204ENST00000540669 RIPPLY1Q0D2K3 151 aa8.98□□□□□ -0.97
VPS33A-204ENST00000540669 UBE2V2Q15819 145 aa8.98□□□□□ -0.97
VPS33A-204ENST00000540669 ODF4Q2M2E3 257 aa8.98□□□□□ -0.97
VPS33A-204ENST00000540669 GFOD2Q3B7J2 385 aa8.98□□□□□ -0.97
VPS33A-204ENST00000540669 FAM76BQ5HYJ3 339 aa8.98□□□□□ -0.97
VPS33A-204ENST00000540669 CEP78Q5JTW2 689 aa8.98□□□□□ -0.97
VPS33A-204ENST00000540669 CLVS2Q5SYC1 327 aa8.98□□□□□ -0.97
VPS33A-204ENST00000540669 FAM166AQ6J272 317 aa8.98□□□□□ -0.97
VPS33A-204ENST00000540669 ALKBH2Q6NS38 261 aa8.98□□□□□ -0.97
VPS33A-204ENST00000540669 PAMR1Q6UXH9 720 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms