RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 TMEM269A0A1B0GVZ9 245 aa12.34□□□□□ -0.43
USP28-204ENST00000537642 ACOD1A6NK06 481 aa12.34□□□□□ -0.43
USP28-204ENST00000537642 C3orf80F5H4A9 247 aa12.34□□□□□ -0.43
USP28-204ENST00000537642 LGALS8O00214 317 aa12.34□□□□□ -0.43
USP28-204ENST00000537642 ZNF254O75437 659 aa12.34□□□□□ -0.43
USP28-204ENST00000537642 VENTXO95231 258 aa12.34□□□□□ -0.43
USP28-204ENST00000537642 LHBP01229 141 aa12.34□□□□□ -0.43
USP28-204ENST00000537642 DCTDP32321 178 aa12.34□□□□□ -0.43
USP28-204ENST00000537642 PSMB10P40306 273 aa12.34□□□□□ -0.43
USP28-204ENST00000537642 PITPNBP48739 271 aa12.34□□□□□ -0.43
USP28-204ENST00000537642 SCGB2A2Q13296 93 aa12.34□□□□□ -0.43
USP28-204ENST00000537642 ZNF841Q6ZN19 808 aa12.34□□□□□ -0.43
USP28-204ENST00000537642 GID4Q8IVV7 300 aa12.34□□□□□ -0.43
USP28-204ENST00000537642 SLC35F2Q8IXU6 374 aa12.34□□□□□ -0.43
USP28-204ENST00000537642 ZNF679Q8IYX0 411 aa12.34□□□□□ -0.43
USP28-204ENST00000537642 GCSAMQ8N6F7 178 aa12.34□□□□□ -0.43
USP28-204ENST00000537642 OR1M1Q8NGA1 313 aa12.34□□□□□ -0.43
USP28-204ENST00000537642 DACT3Q96B18 629 aaPredicted RBP12.34□□□□□ -0.43
USP28-204ENST00000537642 ITPKCQ96DU7 683 aa12.34□□□□□ -0.43
USP28-204ENST00000537642 RBM4BQ9BQ04 359 aaKnown RBP12.34□□□□□ -0.43
USP28-204ENST00000537642 MROQ9BYG7 248 aa12.34□□□□□ -0.43
USP28-204ENST00000537642 HAO2Q9NYQ3 351 aa12.34□□□□□ -0.43
USP28-204ENST00000537642 ZNF391Q9UJN7 358 aa12.34□□□□□ -0.43
USP28-204ENST00000537642 AUP1Q9Y679 476 aa12.34□□□□□ -0.43
USP28-204ENST00000537642 ANK2Q01484 3957 aa12.34□□□□□ -0.43
USP28-204ENST00000537642 A0A0U1RQV5 110 aa12.33□□□□□ -0.44
USP28-204ENST00000537642 hCG_1807616A0A1W2PRN6 198 aa12.33□□□□□ -0.44
USP28-204ENST00000537642 OOEPA6NGQ2 149 aa12.33□□□□□ -0.44
USP28-204ENST00000537642 TNFRSF13BO14836 293 aaPredicted RBP12.33□□□□□ -0.44
USP28-204ENST00000537642 MAGEB4O15481 346 aaPredicted RBP12.33□□□□□ -0.44
USP28-204ENST00000537642 RGS9O75916 674 aaPredicted RBP12.33□□□□□ -0.44
USP28-204ENST00000537642 CST4P01036 141 aa12.33□□□□□ -0.44
USP28-204ENST00000537642 EGR1P18146 543 aa12.33□□□□□ -0.44
USP28-204ENST00000537642 GNALP38405 381 aa12.33□□□□□ -0.44
USP28-204ENST00000537642 RIDAP52758 137 aaKnown RBP12.33□□□□□ -0.44
USP28-204ENST00000537642 CSNK2BP67870 215 aa12.33□□□□□ -0.44
USP28-204ENST00000537642 PAX8Q06710 450 aa12.33□□□□□ -0.44
USP28-204ENST00000537642 PRDX4Q13162 271 aa12.33□□□□□ -0.44
USP28-204ENST00000537642 SNCBQ16143 134 aa12.33□□□□□ -0.44
USP28-204ENST00000537642 WDR25Q64LD2 544 aaPredicted RBP12.33□□□□□ -0.44
USP28-204ENST00000537642 ZNF322Q6U7Q0 402 aaPredicted RBP12.33□□□□□ -0.44
USP28-204ENST00000537642 NLRC3Q7RTR2 1065 aa12.33□□□□□ -0.44
USP28-204ENST00000537642 SEMA6DQ8NFY4 1073 aa12.33□□□□□ -0.44
USP28-204ENST00000537642 APOL4Q9BPW4 351 aa12.33□□□□□ -0.44
USP28-204ENST00000537642 MICU1Q9BPX6 476 aa12.33□□□□□ -0.44
USP28-204ENST00000537642 FGF23Q9GZV9 251 aaPredicted RBP12.33□□□□□ -0.44
USP28-204ENST00000537642 PBOV1Q9GZY1 135 aa12.33□□□□□ -0.44
USP28-204ENST00000537642 CTSZQ9UBR2 303 aa12.33□□□□□ -0.44
USP28-204ENST00000537642 IKZF2Q9UKS7 526 aa12.33□□□□□ -0.44
USP28-204ENST00000537642 MPC1Q9Y5U8 109 aa12.33□□□□□ -0.44
USP28-204ENST00000537642 A0A0A6YYJ9 748 aa12.32□□□□□ -0.44
USP28-204ENST00000537642 TRAV38-1A0A0B4J264 116 aa12.32□□□□□ -0.44
USP28-204ENST00000537642 IGHV2-70DA0A0C4DH43 119 aa12.32□□□□□ -0.44
USP28-204ENST00000537642 ZNF850A8MQ14 1090 aa12.32□□□□□ -0.44
USP28-204ENST00000537642 SRSF10O75494 262 aaKnown RBP12.32□□□□□ -0.44
USP28-204ENST00000537642 IGLV3-1P01715 115 aa12.32□□□□□ -0.44
USP28-204ENST00000537642 ALPLP05186 524 aa12.32□□□□□ -0.44
USP28-204ENST00000537642 CXCR4P61073 352 aa12.32□□□□□ -0.44
USP28-204ENST00000537642 IL5RAQ01344 420 aa12.32□□□□□ -0.44
USP28-204ENST00000537642 MFGE8Q08431 387 aaPredicted RBP12.32□□□□□ -0.44
USP28-204ENST00000537642 KCNJ8Q15842 424 aa12.32□□□□□ -0.44
USP28-204ENST00000537642 ZNF829Q3KNS6 432 aaPredicted RBP12.32□□□□□ -0.44
USP28-204ENST00000537642 KLF17Q5JT82 389 aaPredicted RBP12.32□□□□□ -0.44
USP28-204ENST00000537642 ZFP1Q6P2D0 407 aa12.32□□□□□ -0.44
USP28-204ENST00000537642 WDR82Q6UXN9 313 aa12.32□□□□□ -0.44
USP28-204ENST00000537642 GALNT4Q8N4A0 578 aa12.32□□□□□ -0.44
USP28-204ENST00000537642 FTMTQ8N4E7 242 aa12.32□□□□□ -0.44
USP28-204ENST00000537642 OR51G2Q8NGK0 314 aa12.32□□□□□ -0.44
USP28-204ENST00000537642 ZNF418Q8TF45 676 aaPredicted RBP12.32□□□□□ -0.44
USP28-204ENST00000537642 LRRC29Q8WV35 223 aa12.32□□□□□ -0.44
USP28-204ENST00000537642 HPSE2Q8WWQ2 592 aa12.32□□□□□ -0.44
USP28-204ENST00000537642 RAB40AQ8WXH6 277 aa12.32□□□□□ -0.44
USP28-204ENST00000537642 OR5P3Q8WZ94 311 aa12.32□□□□□ -0.44
USP28-204ENST00000537642 PIGCQ92535 297 aa12.32□□□□□ -0.44
USP28-204ENST00000537642 PPP1R14AQ96A00 147 aa12.32□□□□□ -0.44
USP28-204ENST00000537642 MNTQ99583 582 aa12.32□□□□□ -0.44
USP28-204ENST00000537642 SLC6A7Q99884 636 aa12.32□□□□□ -0.44
USP28-204ENST00000537642 MRI1Q9BV20 369 aa12.32□□□□□ -0.44
USP28-204ENST00000537642 TLNRD1Q9H1K6 362 aa12.32□□□□□ -0.44
USP28-204ENST00000537642 RNPEPL1Q9HAU8 725 aa12.32□□□□□ -0.44
USP28-204ENST00000537642 CLN6Q9NWW5 311 aa12.32□□□□□ -0.44
USP28-204ENST00000537642 CLN8Q9UBY8 286 aa12.32□□□□□ -0.44
USP28-204ENST00000537642 NUFIP1Q9UHK0 495 aaKnown RBP12.32□□□□□ -0.44
USP28-204ENST00000537642 IGHV3OR15-7A0A075B7D8 119 aa12.31□□□□□ -0.44
USP28-204ENST00000537642 ANXA2P2A6NMY6 339 aa12.31□□□□□ -0.44
USP28-204ENST00000537642 ZNF670-ZNF695F2Z2N8 137 aa12.31□□□□□ -0.44
USP28-204ENST00000537642 EBAG9O00559 213 aa12.31□□□□□ -0.44
USP28-204ENST00000537642 EI24O14681 340 aa12.31□□□□□ -0.44
USP28-204ENST00000537642 PHYHO14832 338 aa12.31□□□□□ -0.44
USP28-204ENST00000537642 ADAM20O43506 726 aa12.31□□□□□ -0.44
USP28-204ENST00000537642 GYPAP02724 150 aa12.31□□□□□ -0.44
USP28-204ENST00000537642 HTR1FP30939 366 aa12.31□□□□□ -0.44
USP28-204ENST00000537642 MAP2K3P46734 347 aa12.31□□□□□ -0.44
USP28-204ENST00000537642 POU4F2Q12837 409 aa12.31□□□□□ -0.44
USP28-204ENST00000537642 ARMCX4Q5H9R4 360 aa12.31□□□□□ -0.44
USP28-204ENST00000537642 TEX36Q5VZQ5 186 aa12.31□□□□□ -0.44
USP28-204ENST00000537642 USP43Q70EL4 1123 aa12.31□□□□□ -0.44
USP28-204ENST00000537642 KRT74Q7RTS7 529 aa12.31□□□□□ -0.44
USP28-204ENST00000537642 SSX6Q7RTT6 188 aa12.31□□□□□ -0.44
USP28-204ENST00000537642 FAM90A1Q86YD7 464 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 126.1 ms