RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 TBL1XR1Q9BZK7 514 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 ING2Q9H160 280 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 DEFB129Q9H1M3 183 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 ARMC7Q9H6L4 198 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 RPRD1BQ9NQG5 326 aaKnown RBP1.57□□□□□ -2.16
CD44-238ENST00000534296 OPN4Q9UHM6 478 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 FLVCR2Q9UPI3 526 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 LRRC42Q9Y546 428 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 TTC41PQ6P2S7 1318 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 NUP214P35658 2090 aaPredicted RBP1.57□□□□□ -2.16
CD44-238ENST00000534296 IGHV1-3A0A0C4DH29 117 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 A0A1W2PRF3 423 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 A0A1W2PRM7 423 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 COLCA2A8K830 154 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 BTNL10A8MVZ5 291 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 M0R1X1 148 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 TRDMT1O14717 391 aaKnown RBP1.56□□□□□ -2.16
CD44-238ENST00000534296 NMT2O60551 498 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 SMC2O95347 1197 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 TTC4O95801 387 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 MAS1P04201 325 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 SLC35G6P0C7Q6 338 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 PGA4P0DJD7 388 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 PGA3P0DJD8 388 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 ZNF14P17017 642 aaPredicted RBP1.56□□□□□ -2.16
CD44-238ENST00000534296 PRKACAP17612 351 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 PRSS3P35030 304 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 PEX19P40855 299 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 GFERP55789 205 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 PPP1CAP62136 330 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 IRF8Q02556 426 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 SIGLEC14Q08ET2 396 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 LAMTOR4Q0VGL1 99 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 FUT5Q11128 374 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 C5orf64Q2M2E5 130 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 KLHL40Q2TBA0 621 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 TMEM205Q6UW68 189 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 UNQ9165/PRO28630Q6UXU0 137 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 KIF2BQ8N4N8 673 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 WDR31Q8NA23 367 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 C11orf72Q8NBR9 251 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 OR5T1Q8NG75 326 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 OR2Z1Q8NG97 314 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 OR4M1Q8NGD0 313 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 OR10Z1Q8NGY1 313 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 OR6N1Q8NGY5 312 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 MRPL48Q96GC5 212 aaKnown RBP1.56□□□□□ -2.16
CD44-238ENST00000534296 RDH12Q96NR8 316 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 COL21A1Q96P44 957 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 NUDT9Q9BW91 350 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 SFXN3Q9BWM7 321 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 OSBPL11Q9BXB4 747 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 API5Q9BZZ5 524 aaKnown RBP1.56□□□□□ -2.16
CD44-238ENST00000534296 C8orf33Q9H7E9 229 aaPredicted RBP1.56□□□□□ -2.16
CD44-238ENST00000534296 CD209Q9NNX6 404 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 VCX3AQ9NNX9 186 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 C8orf17Q9NRJ1 99 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 RAB23Q9ULC3 237 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 NDRG2Q9UN36 371 aaKnown RBP1.56□□□□□ -2.16
CD44-238ENST00000534296 CABIN1Q9Y6J0 2220 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 PLEKHG2Q9H7P9 1386 aa1.56□□□□□ -2.16
CD44-238ENST00000534296 NPHP4O75161 1426 aaPredicted RBP1.56□□□□□ -2.16
CD44-238ENST00000534296 SIGLEC1Q9BZZ2 1709 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 TRAV8-4A0A0B4J246 113 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 OR6C70A6NIJ9 312 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 A8MWL6 223 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 H3BN98 237 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 RPL36A-HNRNPH2H7BZ11 118 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 DFFAO00273 331 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 SOCS1O15524 211 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 RGS5O15539 181 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 AKR7A2O43488 359 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 SERPINB7O75635 380 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 GCGP01275 180 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 P01737 135 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 CATP04040 527 aaKnown RBP1.55□□□□□ -2.16
CD44-238ENST00000534296 CDK1P06493 297 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 RHOCP08134 193 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 PRKACBP22694 351 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 MPV17P39210 176 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 CLDN8P56748 225 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 MTPNP58546 118 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 TAS2R43P59537 309 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 TAS2R60P59551 318 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 OR2B8PP59922 312 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 LCN2P80188 198 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 FLI1Q01543 452 aaPredicted RBP1.55□□□□□ -2.16
CD44-238ENST00000534296 ST3GAL4Q11206 333 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 RPEL1Q2QD12 228 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 SLC25A35Q3KQZ1 300 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 HIKESHIQ53FT3 197 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 KLHL12Q53G59 568 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 RNASE13Q5GAN3 156 aaKnown RBP1.55□□□□□ -2.16
CD44-238ENST00000534296 GCSAMLQ5JQS6 135 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 KPRPQ5T749 579 aaPredicted RBP1.55□□□□□ -2.16
CD44-238ENST00000534296 HHATQ5VTY9 493 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 SPINT4Q6UDR6 99 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 LINC00523Q86TU6 105 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 ARHGAP18Q8N392 663 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 TMEM105Q8N8V8 129 aa1.55□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms