RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 LGALS14Q8TCE9 139 aa18.34■□□□□ 0.53
VPS28-212ENST00000530836 SOSTQ9BQB4 213 aa18.34■□□□□ 0.53
VPS28-212ENST00000530836 SOX7Q9BT81 388 aa18.34■□□□□ 0.53
VPS28-212ENST00000530836 CHST5Q9GZS9 411 aa18.34■□□□□ 0.53
VPS28-212ENST00000530836 METTL17Q9H7H0 456 aaPredicted RBP18.34■□□□□ 0.53
VPS28-212ENST00000530836 TBCCD1Q9NVR7 557 aa18.34■□□□□ 0.53
VPS28-212ENST00000530836 CLDN14O95500 239 aa18.34■□□□□ 0.53
VPS28-212ENST00000530836 HTR2CP28335 458 aa18.34■□□□□ 0.53
VPS28-212ENST00000530836 RIN1Q13671 783 aa18.34■□□□□ 0.53
VPS28-212ENST00000530836 RAB40AQ8WXH6 277 aa18.34■□□□□ 0.53
VPS28-212ENST00000530836 USB1Q9BQ65 265 aaKnown RBP18.34■□□□□ 0.53
VPS28-212ENST00000530836 ABCG5Q9H222 651 aa18.34■□□□□ 0.53
VPS28-212ENST00000530836 hCG_38984A0A1B0GV85 526 aa18.33■□□□□ 0.52
VPS28-212ENST00000530836 OR5H1A6NKK0 313 aa18.33■□□□□ 0.52
VPS28-212ENST00000530836 ICMTO60725 284 aa18.33■□□□□ 0.52
VPS28-212ENST00000530836 UPK1BO75841 260 aa18.33■□□□□ 0.52
VPS28-212ENST00000530836 IGKV3-15P01624 115 aa18.33■□□□□ 0.52
VPS28-212ENST00000530836 OCMP0CE72 109 aaPredicted RBP18.33■□□□□ 0.52
VPS28-212ENST00000530836 PSMB1P20618 241 aaKnown RBP18.33■□□□□ 0.52
VPS28-212ENST00000530836 IL32P24001 234 aa18.33■□□□□ 0.52
VPS28-212ENST00000530836 GSK3AP49840 483 aa18.33■□□□□ 0.52
VPS28-212ENST00000530836 ZNF92Q03936 586 aa18.33■□□□□ 0.52
VPS28-212ENST00000530836 OR8B8Q15620 311 aa18.33■□□□□ 0.52
VPS28-212ENST00000530836 ZNF474Q6S9Z5 364 aaPredicted RBP18.33■□□□□ 0.52
VPS28-212ENST00000530836 LYPD6Q86Y78 171 aa18.33■□□□□ 0.52
VPS28-212ENST00000530836 JAGN1Q8N5M9 183 aa18.33■□□□□ 0.52
VPS28-212ENST00000530836 OR5H6Q8NGV6 325 aa18.33■□□□□ 0.52
VPS28-212ENST00000530836 OR2AE1Q8NHA4 323 aa18.33■□□□□ 0.52
VPS28-212ENST00000530836 TECTBQ96PL2 329 aa18.33■□□□□ 0.52
VPS28-212ENST00000530836 EIF3KQ9UBQ5 218 aaKnown RBP18.33■□□□□ 0.52
VPS28-212ENST00000530836 EXTL2Q9UBQ6 330 aa18.33■□□□□ 0.52
VPS28-212ENST00000530836 OR5V1Q9UGF6 321 aa18.33■□□□□ 0.52
VPS28-212ENST00000530836 A8MXE2 369 aa18.32■□□□□ 0.52
VPS28-212ENST00000530836 EIF4EP06730 217 aaKnown RBP18.32■□□□□ 0.52
VPS28-212ENST00000530836 NR4A2P43354 598 aa18.32■□□□□ 0.52
VPS28-212ENST00000530836 FAM3AP98173 230 aa18.32■□□□□ 0.52
VPS28-212ENST00000530836 UNQ6126/PRO20091Q6UXV3 157 aa18.32■□□□□ 0.52
VPS28-212ENST00000530836 WDR31Q8NA23 367 aa18.32■□□□□ 0.52
VPS28-212ENST00000530836 CPNE2Q96FN4 548 aaPredicted RBP18.32■□□□□ 0.52
VPS28-212ENST00000530836 SRRQ9GZT4 340 aa18.32■□□□□ 0.52
VPS28-212ENST00000530836 A0A0B4J203 849 aa18.31■□□□□ 0.52
VPS28-212ENST00000530836 LOC100289279A0A1B0GTE1 492 aa18.31■□□□□ 0.52
VPS28-212ENST00000530836 ISPDA4D126 451 aa18.31■□□□□ 0.52
VPS28-212ENST00000530836 A6NIN4 97 aa18.31■□□□□ 0.52
VPS28-212ENST00000530836 TPPPO94811 219 aa18.31■□□□□ 0.52
VPS28-212ENST00000530836 FAHP16930 419 aa18.31■□□□□ 0.52
VPS28-212ENST00000530836 ART1P52961 327 aa18.31■□□□□ 0.52
VPS28-212ENST00000530836 IL18Q14116 193 aa18.31■□□□□ 0.52
VPS28-212ENST00000530836 ZNF79Q15937 498 aa18.31■□□□□ 0.52
VPS28-212ENST00000530836 TIMM23BQ5SRD1 257 aa18.31■□□□□ 0.52
VPS28-212ENST00000530836 RELL2Q8NC24 303 aaPredicted RBP18.31■□□□□ 0.52
VPS28-212ENST00000530836 FAM3DQ96BQ1 224 aa18.31■□□□□ 0.52
VPS28-212ENST00000530836 REPIN1Q9BWE0 567 aaKnown RBP18.31■□□□□ 0.52
VPS28-212ENST00000530836 PPP1R3EQ9H7J1 279 aa18.31■□□□□ 0.52
VPS28-212ENST00000530836 CDH20Q9HBT6 801 aa18.31■□□□□ 0.52
VPS28-212ENST00000530836 KCNJ16Q9NPI9 418 aa18.31■□□□□ 0.52
VPS28-212ENST00000530836 ELOVL5Q9NYP7 299 aa18.31■□□□□ 0.52
VPS28-212ENST00000530836 INTS1Q8N201 2190 aaKnown RBP18.31■□□□□ 0.52
VPS28-212ENST00000530836 CCL2P13500 99 aa18.31■□□□□ 0.52
VPS28-212ENST00000530836 PRF1P14222 555 aa18.31■□□□□ 0.52
VPS28-212ENST00000530836 ZNF93P35789 620 aaPredicted RBP18.31■□□□□ 0.52
VPS28-212ENST00000530836 PITPNBP48739 271 aa18.31■□□□□ 0.52
VPS28-212ENST00000530836 CLDN12P56749 244 aa18.31■□□□□ 0.52
VPS28-212ENST00000530836 OR5AS1Q8N127 324 aa18.31■□□□□ 0.52
VPS28-212ENST00000530836 FTMTQ8N4E7 242 aa18.31■□□□□ 0.52
VPS28-212ENST00000530836 OR52N4Q8NGI2 321 aa18.31■□□□□ 0.52
VPS28-212ENST00000530836 SLC25A28Q96A46 364 aa18.31■□□□□ 0.52
VPS28-212ENST00000530836 PTX4Q96A99 478 aa18.31■□□□□ 0.52
VPS28-212ENST00000530836 SPSB1Q96BD6 273 aa18.31■□□□□ 0.52
VPS28-212ENST00000530836 S100A16Q96FQ6 103 aaKnown RBP18.31■□□□□ 0.52
VPS28-212ENST00000530836 MS4A3Q96HJ5 214 aa18.31■□□□□ 0.52
VPS28-212ENST00000530836 JKAMPQ9P055 326 aa18.31■□□□□ 0.52
VPS28-212ENST00000530836 SPTBN1Q01082 2364 aaKnown RBP18.3■□□□□ 0.52
VPS28-212ENST00000530836 ZNF816-ZNF321PA0A0X1KG74 233 aa18.3■□□□□ 0.52
VPS28-212ENST00000530836 FAM90A27PA6NNH2 459 aa18.3■□□□□ 0.52
VPS28-212ENST00000530836 HCKP08631 526 aa18.3■□□□□ 0.52
VPS28-212ENST00000530836 ARSBP15848 533 aa18.3■□□□□ 0.52
VPS28-212ENST00000530836 TUBG1P23258 451 aa18.3■□□□□ 0.52
VPS28-212ENST00000530836 IDH3GP51553 393 aaPredicted RBP18.3■□□□□ 0.52
VPS28-212ENST00000530836 PITPNAQ00169 270 aa18.3■□□□□ 0.52
VPS28-212ENST00000530836 CNN3Q15417 329 aaKnown RBP18.3■□□□□ 0.52
VPS28-212ENST00000530836 TSC22D1Q15714 1073 aa18.3■□□□□ 0.52
VPS28-212ENST00000530836 C3orf36Q3SXR2 165 aa18.3■□□□□ 0.52
VPS28-212ENST00000530836 PYDC2Q56P42 97 aa18.3■□□□□ 0.52
VPS28-212ENST00000530836 CLVS2Q5SYC1 327 aa18.3■□□□□ 0.52
VPS28-212ENST00000530836 TMEM42Q69YG0 159 aa18.3■□□□□ 0.52
VPS28-212ENST00000530836 PYHIN1Q6K0P9 492 aa18.3■□□□□ 0.52
VPS28-212ENST00000530836 MRPL21Q7Z2W9 205 aaKnown RBP18.3■□□□□ 0.52
VPS28-212ENST00000530836 STEAP2Q8NFT2 490 aa18.3■□□□□ 0.52
VPS28-212ENST00000530836 C15orf40Q8WUR7 153 aa18.3■□□□□ 0.52
VPS28-212ENST00000530836 PSMG3-AS1Q96PY0 264 aa18.3■□□□□ 0.52
VPS28-212ENST00000530836 TUBG2Q9NRH3 451 aa18.3■□□□□ 0.52
VPS28-212ENST00000530836 NKX2-6A6NCS4 301 aa18.29■□□□□ 0.52
VPS28-212ENST00000530836 PRKACBP22694 351 aa18.29■□□□□ 0.52
VPS28-212ENST00000530836 ACKR3P25106 362 aa18.29■□□□□ 0.52
VPS28-212ENST00000530836 POU3F4P49335 361 aa18.29■□□□□ 0.52
VPS28-212ENST00000530836 GK2Q14410 553 aaPredicted RBP18.29■□□□□ 0.52
VPS28-212ENST00000530836 C2orf76Q3KRA6 126 aa18.29■□□□□ 0.52
VPS28-212ENST00000530836 KRT74Q7RTS7 529 aa18.29■□□□□ 0.52
VPS28-212ENST00000530836 SSX8Q7RTT4 187 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms