RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 PROKR2Q8NFJ6 384 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 PXT1Q8NFP0 134 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 OR51A7Q8NH64 312 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 MARCH1Q8TCQ1 289 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 ZFP90Q8TF47 636 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 DEDD2Q8WXF8 326 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 TMEM203Q969S6 136 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 PPWD1Q96BP3 646 aaKnown RBP2.8□□□□□ -1.96
CD44-217ENST00000525348 RAB3CQ96E17 227 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 SMIM12Q96EX1 92 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 NARS2Q96I59 477 aaKnown RBP2.8□□□□□ -1.96
CD44-217ENST00000525348 MS4A14Q96JA4 679 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 AKR1E2Q96JD6 320 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 GPR137Q96N19 417 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 SIGLEC12Q96PQ1 595 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 SORT1Q99523 831 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 TSNAXQ99598 290 aaKnown RBP2.8□□□□□ -1.96
CD44-217ENST00000525348 PDCD10Q9BUL8 212 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 ALG12Q9BV10 488 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 C1orf50Q9BV19 199 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 ROPN1BQ9BZX4 212 aaPredicted RBP2.8□□□□□ -1.96
CD44-217ENST00000525348 CHRNA10Q9GZZ6 450 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 PORCNQ9H237 461 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 C1orf198Q9H425 327 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 APMAPQ9HDC9 416 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 AMBNQ9NP70 447 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 AGPAT4Q9NRZ5 378 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 MCUBQ9NWR8 336 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 MRPL22Q9NWU5 206 aaKnown RBP2.8□□□□□ -1.96
CD44-217ENST00000525348 C1orf109Q9NX04 203 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 LYARQ9NX58 379 aaKnown RBP2.8□□□□□ -1.96
CD44-217ENST00000525348 PTTG3PQ9NZH4 202 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 TMEM9Q9P0T7 183 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 ZNF639Q9UID6 485 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 MRTO4Q9UKD2 239 aaKnown RBP2.8□□□□□ -1.96
CD44-217ENST00000525348 ZNF490Q9ULM2 529 aaPredicted RBP2.8□□□□□ -1.96
CD44-217ENST00000525348 BAIAP2Q9UQB8 552 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 MRPS33Q9Y291 106 aaKnown RBP2.8□□□□□ -1.96
CD44-217ENST00000525348 GSTK1Q9Y2Q3 226 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 PRG3Q9Y2Y8 225 aaPredicted RBP2.8□□□□□ -1.96
CD44-217ENST00000525348 NPTNQ9Y639 398 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 SLCO1B1Q9Y6L6 691 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 OTOFQ9HC10 1997 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 CACNA1SQ13698 1873 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 PARP4Q9UKK3 1724 aaKnown RBP2.79□□□□□ -1.96
CD44-217ENST00000525348 TRBV11-1A0A0K0K1C0 115 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 TMEM213A2RRL7 107 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 SDR42E2A6NKP2 422 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 RNF212BA8MTL3 300 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 FAM220BPB1ANY3 271 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 KRBOX1C9JBD0 128 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 H3BMQ9 156 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 SLC28A1O00337 649 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 CDIPTO14735 213 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 UBDO15205 165 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 SOX15O60248 233 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 LRP3O75074 770 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 WBP4O75554 376 aaKnown RBP2.79□□□□□ -1.96
CD44-217ENST00000525348 ATG12O94817 140 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 OR4F21O95013 312 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 GH1P01241 217 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 IGHV2-5P01817 119 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 RPN2P04844 631 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 C2P06681 752 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 SERPINE2P07093 398 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 CRYGBP07316 175 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 C8GP07360 202 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 CD37P11049 281 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 ANXA3P12429 323 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 GTF2F2P13984 249 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 NCK1P16333 377 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 TPSB2P20231 275 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 ZBTB25P24278 435 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 AKR1C3P42330 323 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 RGS4P49798 205 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 KCNK10P57789 538 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 SEC61GP60059 68 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 PAX2Q02962 417 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 GNA12Q03113 381 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 AESQ08117 197 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 SKP2Q13309 424 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 BIKQ13323 160 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 KRR1Q13601 381 aaKnown RBP2.79□□□□□ -1.96
CD44-217ENST00000525348 TPBGQ13641 420 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 PDE7AQ13946 482 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 GK2Q14410 553 aaPredicted RBP2.79□□□□□ -1.96
CD44-217ENST00000525348 ELAVL3Q14576 367 aaKnown RBP2.79□□□□□ -1.96
CD44-217ENST00000525348 TMED2Q15363 201 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 SF3A2Q15428 464 aaKnown RBP2.79□□□□□ -1.96
CD44-217ENST00000525348 OR1C1Q15619 314 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 TPSAB1Q15661 275 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 CARTPTQ16568 116 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 GUCA2BQ16661 112 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 HAGHQ16775 308 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 ATP6V1FQ16864 119 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 AGKQ53H12 422 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 XKR7Q5GH72 579 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 N4BP2L1Q5TBK1 243 aaPredicted RBP2.79□□□□□ -1.96
CD44-217ENST00000525348 OR4F3Q6IEY1 312 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 SLC8B1Q6J4K2 584 aa2.79□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms