RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 GLAP06280 429 aa12.4□□□□□ -0.43
SYNPO-205ENST00000522122 PIGPP57054 158 aa12.4□□□□□ -0.43
SYNPO-205ENST00000522122 TRILQ7L0X0 811 aa12.4□□□□□ -0.43
SYNPO-205ENST00000522122 MRGPREQ86SM8 312 aa12.4□□□□□ -0.43
SYNPO-205ENST00000522122 SLC38A6Q8IZM9 456 aa12.4□□□□□ -0.43
SYNPO-205ENST00000522122 PP6455Q8WZ26 134 aa12.4□□□□□ -0.43
SYNPO-205ENST00000522122 ZNF707Q96C28 371 aaPredicted RBP12.4□□□□□ -0.43
SYNPO-205ENST00000522122 REEP6Q96HR9 211 aa12.4□□□□□ -0.43
SYNPO-205ENST00000522122 ST6GALNAC2Q9UJ37 374 aa12.4□□□□□ -0.43
SYNPO-205ENST00000522122 SIRT4Q9Y6E7 314 aaPredicted RBP12.4□□□□□ -0.43
SYNPO-205ENST00000522122 PLXNA3P51805 1871 aa12.39□□□□□ -0.43
SYNPO-205ENST00000522122 ZNF732B4DXR9 585 aa12.39□□□□□ -0.43
SYNPO-205ENST00000522122 XRCC2O43543 280 aa12.39□□□□□ -0.43
SYNPO-205ENST00000522122 DUSP2Q05923 314 aa12.39□□□□□ -0.43
SYNPO-205ENST00000522122 CLN3Q13286 438 aa12.39□□□□□ -0.43
SYNPO-205ENST00000522122 PTP4A1Q93096 173 aa12.39□□□□□ -0.43
SYNPO-205ENST00000522122 INTS12Q96CB8 462 aaKnown RBP12.39□□□□□ -0.43
SYNPO-205ENST00000522122 NIT2Q9NQR4 276 aa12.39□□□□□ -0.43
SYNPO-205ENST00000522122 DCTN6O00399 190 aa12.39□□□□□ -0.43
SYNPO-205ENST00000522122 EDDM3BP56851 147 aa12.39□□□□□ -0.43
SYNPO-205ENST00000522122 TMEM71Q6P5X7 295 aa12.39□□□□□ -0.43
SYNPO-205ENST00000522122 C2CD4CQ8TF44 421 aa12.39□□□□□ -0.43
SYNPO-205ENST00000522122 DAZAP1Q96EP5 407 aaKnown RBP12.39□□□□□ -0.43
SYNPO-205ENST00000522122 RTL8AQ9BWD3 113 aa12.39□□□□□ -0.43
SYNPO-205ENST00000522122 DYNLRB1Q9NP97 96 aa12.39□□□□□ -0.43
SYNPO-205ENST00000522122 A0A087WZY1 265 aa12.39□□□□□ -0.43
SYNPO-205ENST00000522122 WDR1O75083 606 aa12.39□□□□□ -0.43
SYNPO-205ENST00000522122 CD1AP06126 327 aa12.39□□□□□ -0.43
SYNPO-205ENST00000522122 CT62P0C5K7 136 aa12.39□□□□□ -0.43
SYNPO-205ENST00000522122 FAHP16930 419 aa12.39□□□□□ -0.43
SYNPO-205ENST00000522122 SDHBP21912 280 aa12.39□□□□□ -0.43
SYNPO-205ENST00000522122 HTRA4P83105 476 aaPredicted RBP12.39□□□□□ -0.43
SYNPO-205ENST00000522122 ZNF141Q15928 474 aa12.39□□□□□ -0.43
SYNPO-205ENST00000522122 TMEM41BQ5BJD5 291 aa12.39□□□□□ -0.43
SYNPO-205ENST00000522122 OR4D9Q8NGE8 314 aa12.39□□□□□ -0.43
SYNPO-205ENST00000522122 ST3GAL6Q9Y274 331 aa12.39□□□□□ -0.43
SYNPO-205ENST00000522122 A0A1B0GTH9 108 aa12.39□□□□□ -0.43
SYNPO-205ENST00000522122 OR2C1O95371 312 aa12.39□□□□□ -0.43
SYNPO-205ENST00000522122 RPUSD3Q6P087 351 aaKnown RBP12.39□□□□□ -0.43
SYNPO-205ENST00000522122 TMEM88Q6PEY1 159 aa12.39□□□□□ -0.43
SYNPO-205ENST00000522122 DEGS2Q6QHC5 323 aa12.39□□□□□ -0.43
SYNPO-205ENST00000522122 CLRN3Q8NCR9 226 aa12.39□□□□□ -0.43
SYNPO-205ENST00000522122 IFI44Q8TCB0 444 aa12.39□□□□□ -0.43
SYNPO-205ENST00000522122 APOBEC4Q8WW27 367 aaKnown RBP12.39□□□□□ -0.43
SYNPO-205ENST00000522122 RPP25Q9BUL9 199 aaKnown RBP12.39□□□□□ -0.43
SYNPO-205ENST00000522122 FAM234AQ9H0X4 552 aa12.39□□□□□ -0.43
SYNPO-205ENST00000522122 PATZ1Q9HBE1 687 aaKnown RBP12.39□□□□□ -0.43
SYNPO-205ENST00000522122 LHX9Q9NQ69 397 aa12.39□□□□□ -0.43
SYNPO-205ENST00000522122 KCNIP2Q9NS61 270 aa12.39□□□□□ -0.43
SYNPO-205ENST00000522122 SCGB1D1O95968 90 aa12.38□□□□□ -0.43
SYNPO-205ENST00000522122 GPR3P46089 330 aa12.38□□□□□ -0.43
SYNPO-205ENST00000522122 ELLP55199 621 aaPredicted RBP12.38□□□□□ -0.43
SYNPO-205ENST00000522122 SLC25A26Q70HW3 274 aa12.38□□□□□ -0.43
SYNPO-205ENST00000522122 MUC20Q8N307 709 aaPredicted RBP12.38□□□□□ -0.43
SYNPO-205ENST00000522122 ZDHHC22Q8N966 263 aa12.38□□□□□ -0.43
SYNPO-205ENST00000522122 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.38□□□□□ -0.43
SYNPO-205ENST00000522122 SPACA9Q96E40 222 aaPredicted RBP12.38□□□□□ -0.43
SYNPO-205ENST00000522122 FOXQ1Q9C009 403 aa12.38□□□□□ -0.43
SYNPO-205ENST00000522122 POLDIP2Q9Y2S7 368 aa12.38□□□□□ -0.43
SYNPO-205ENST00000522122 PCDHGA9Q9Y5G4 932 aaKnown RBP12.38□□□□□ -0.43
SYNPO-205ENST00000522122 B3GALNT1O75752 331 aa12.38□□□□□ -0.43
SYNPO-205ENST00000522122 HLA-DOBP13765 273 aa12.38□□□□□ -0.43
SYNPO-205ENST00000522122 CDAP32320 146 aa12.38□□□□□ -0.43
SYNPO-205ENST00000522122 EDDM3AQ14507 147 aa12.38□□□□□ -0.43
SYNPO-205ENST00000522122 B3GNTL1Q67FW5 361 aaPredicted RBP12.38□□□□□ -0.43
SYNPO-205ENST00000522122 UQCC3Q6UW78 93 aa12.38□□□□□ -0.43
SYNPO-205ENST00000522122 OR5AS1Q8N127 324 aa12.38□□□□□ -0.43
SYNPO-205ENST00000522122 NOXO1Q8NFA2 376 aa12.38□□□□□ -0.43
SYNPO-205ENST00000522122 LINC00052Q96N35 136 aa12.38□□□□□ -0.43
SYNPO-205ENST00000522122 IGHV3-15A0A0B4J1V0 119 aa12.38□□□□□ -0.43
SYNPO-205ENST00000522122 C4orf47A7E2U8 309 aa12.38□□□□□ -0.43
SYNPO-205ENST00000522122 CTAG2O75638 210 aa12.38□□□□□ -0.43
SYNPO-205ENST00000522122 HOXC4P09017 264 aaPredicted RBP12.38□□□□□ -0.43
SYNPO-205ENST00000522122 HAGHQ16775 308 aa12.38□□□□□ -0.43
SYNPO-205ENST00000522122 C9orf50Q5SZB4 431 aa12.38□□□□□ -0.43
SYNPO-205ENST00000522122 C6orf15Q6UXA7 325 aaPredicted RBP12.38□□□□□ -0.43
SYNPO-205ENST00000522122 HSD17B13Q7Z5P4 300 aaPredicted RBP12.38□□□□□ -0.43
SYNPO-205ENST00000522122 OR2AE1Q8NHA4 323 aa12.38□□□□□ -0.43
SYNPO-205ENST00000522122 MARVELD3Q96A59 401 aa12.38□□□□□ -0.43
SYNPO-205ENST00000522122 CYB5R1Q9UHQ9 305 aa12.38□□□□□ -0.43
SYNPO-205ENST00000522122 DHRS2Q13268 280 aa12.38□□□□□ -0.43
SYNPO-205ENST00000522122 ZNF239Q16600 458 aaKnown RBP12.38□□□□□ -0.43
SYNPO-205ENST00000522122 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.38□□□□□ -0.43
SYNPO-205ENST00000522122 Q6ZS52 159 aa12.38□□□□□ -0.43
SYNPO-205ENST00000522122 ZNF784Q8NCA9 323 aaPredicted RBP12.38□□□□□ -0.43
SYNPO-205ENST00000522122 ATG2BQ96BY7 2078 aa12.37□□□□□ -0.43
SYNPO-205ENST00000522122 CYB5BO43169 146 aa12.37□□□□□ -0.43
SYNPO-205ENST00000522122 ADRA2AP08913 450 aa12.37□□□□□ -0.43
SYNPO-205ENST00000522122 NME1P15531 152 aaKnown RBP12.37□□□□□ -0.43
SYNPO-205ENST00000522122 THBS4P35443 961 aa12.37□□□□□ -0.43
SYNPO-205ENST00000522122 THBS3P49746 956 aa12.37□□□□□ -0.43
SYNPO-205ENST00000522122 FMODQ06828 376 aa12.37□□□□□ -0.43
SYNPO-205ENST00000522122 GGTLC2Q14390 218 aa12.37□□□□□ -0.43
SYNPO-205ENST00000522122 CBLN3Q6UW01 205 aa12.37□□□□□ -0.43
SYNPO-205ENST00000522122 NHLRC1Q6VVB1 395 aa12.37□□□□□ -0.43
SYNPO-205ENST00000522122 H2BFWTQ7Z2G1 175 aa12.37□□□□□ -0.43
SYNPO-205ENST00000522122 GPBAR1Q8TDU6 330 aa12.37□□□□□ -0.43
SYNPO-205ENST00000522122 GAB2Q9UQC2 676 aa12.37□□□□□ -0.43
SYNPO-205ENST00000522122 ALG1L2C9J202 215 aa12.37□□□□□ -0.43
SYNPO-205ENST00000522122 ZNF250P15622 560 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms