RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 KMT5CQ86Y97 462 aa11.36□□□□□ -0.59
USP53-209ENST00000514665 DHRS9Q9BPW9 319 aa11.36□□□□□ -0.59
USP53-209ENST00000514665 SAMD10Q9BYL1 202 aa11.36□□□□□ -0.59
USP53-209ENST00000514665 KPTNQ9Y664 436 aa11.36□□□□□ -0.59
USP53-209ENST00000514665 SIRPB1O00241 398 aa11.35□□□□□ -0.59
USP53-209ENST00000514665 NFYBP25208 207 aa11.35□□□□□ -0.59
USP53-209ENST00000514665 SELENOPP49908 381 aa11.35□□□□□ -0.59
USP53-209ENST00000514665 RAG2P55895 527 aa11.35□□□□□ -0.59
USP53-209ENST00000514665 HLXQ14774 488 aaPredicted RBP11.35□□□□□ -0.59
USP53-209ENST00000514665 PRSS53Q2L4Q9 553 aa11.35□□□□□ -0.59
USP53-209ENST00000514665 ELFN2Q5R3F8 820 aa11.35□□□□□ -0.59
USP53-209ENST00000514665 LAIR2Q6ISS4 152 aa11.35□□□□□ -0.59
USP53-209ENST00000514665 C11orf87Q6NUJ2 197 aa11.35□□□□□ -0.59
USP53-209ENST00000514665 ZNF687Q8N1G0 1237 aa11.35□□□□□ -0.59
USP53-209ENST00000514665 HPSE2Q8WWQ2 592 aa11.35□□□□□ -0.59
USP53-209ENST00000514665 ARV1Q9H2C2 271 aa11.35□□□□□ -0.59
USP53-209ENST00000514665 DYNLRB1Q9NP97 96 aa11.35□□□□□ -0.59
USP53-209ENST00000514665 CYR61O00622 381 aa11.35□□□□□ -0.59
USP53-209ENST00000514665 FAM157BP0CG42 384 aa11.35□□□□□ -0.59
USP53-209ENST00000514665 CD37P11049 281 aa11.35□□□□□ -0.59
USP53-209ENST00000514665 GLULP15104 373 aa11.35□□□□□ -0.59
USP53-209ENST00000514665 MZT1Q08AG7 82 aa11.35□□□□□ -0.59
USP53-209ENST00000514665 SMAD4Q13485 552 aaKnown RBP11.35□□□□□ -0.59
USP53-209ENST00000514665 KIAA0141Q14154 515 aaPredicted RBP11.35□□□□□ -0.59
USP53-209ENST00000514665 ARSJQ5FYB0 599 aaPredicted RBP11.35□□□□□ -0.59
USP53-209ENST00000514665 MRPL41Q8IXM3 137 aaKnown RBP11.35□□□□□ -0.59
USP53-209ENST00000514665 TMEM178AQ8NBL3 297 aa11.35□□□□□ -0.59
USP53-209ENST00000514665 NOXO1Q8NFA2 376 aa11.35□□□□□ -0.59
USP53-209ENST00000514665 OR2AE1Q8NHA4 323 aa11.35□□□□□ -0.59
USP53-209ENST00000514665 WBP1LQ9NX94 342 aa11.35□□□□□ -0.59
USP53-209ENST00000514665 AK3Q9UIJ7 227 aa11.35□□□□□ -0.59
USP53-209ENST00000514665 ZNF732B4DXR9 585 aa11.35□□□□□ -0.59
USP53-209ENST00000514665 UMAD1C9J7I0 102 aa11.35□□□□□ -0.59
USP53-209ENST00000514665 YKT6O15498 198 aa11.35□□□□□ -0.59
USP53-209ENST00000514665 BCL2L11O43521 198 aa11.35□□□□□ -0.59
USP53-209ENST00000514665 DFFBO76075 338 aa11.35□□□□□ -0.59
USP53-209ENST00000514665 ARL3P36405 182 aa11.35□□□□□ -0.59
USP53-209ENST00000514665 WIPI1Q5MNZ9 446 aaPredicted RBP11.35□□□□□ -0.59
USP53-209ENST00000514665 BRICD5Q6PL45 260 aa11.35□□□□□ -0.59
USP53-209ENST00000514665 ARRDC1Q8N5I2 433 aa11.35□□□□□ -0.59
USP53-209ENST00000514665 GABRG3Q99928 467 aa11.35□□□□□ -0.59
USP53-209ENST00000514665 GNG13Q9P2W3 67 aa11.35□□□□□ -0.59
USP53-209ENST00000514665 QSER1Q2KHR3 1735 aa11.34□□□□□ -0.59
USP53-209ENST00000514665 TRIM77I1YAP6 450 aa11.34□□□□□ -0.59
USP53-209ENST00000514665 SCAF4O95104 1147 aaKnown RBP11.34□□□□□ -0.59
USP53-209ENST00000514665 SUMO3P55854 103 aaPredicted RBP11.34□□□□□ -0.59
USP53-209ENST00000514665 KISS1Q15726 138 aa11.34□□□□□ -0.59
USP53-209ENST00000514665 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.34□□□□□ -0.59
USP53-209ENST00000514665 ARHGEF39Q8N4T4 335 aa11.34□□□□□ -0.59
USP53-209ENST00000514665 DTWD2Q8NBA8 298 aa11.34□□□□□ -0.59
USP53-209ENST00000514665 NIT2Q9NQR4 276 aa11.34□□□□□ -0.59
USP53-209ENST00000514665 FRRS1LQ9P0K9 344 aa11.34□□□□□ -0.59
USP53-209ENST00000514665 MED12Q93074 2177 aa11.34□□□□□ -0.59
USP53-209ENST00000514665 IGKV1-8A0A0C4DH67 115 aa11.34□□□□□ -0.59
USP53-209ENST00000514665 TAAR5O14804 337 aa11.34□□□□□ -0.59
USP53-209ENST00000514665 OGG1O15527 345 aa11.34□□□□□ -0.59
USP53-209ENST00000514665 CBR3O75828 277 aa11.34□□□□□ -0.59
USP53-209ENST00000514665 PEBP1P30086 187 aaKnown RBP11.34□□□□□ -0.59
USP53-209ENST00000514665 KIR2DL1P43626 348 aaPredicted RBP11.34□□□□□ -0.59
USP53-209ENST00000514665 INSM1Q01101 510 aaPredicted RBP11.34□□□□□ -0.59
USP53-209ENST00000514665 PDZD11Q5EBL8 140 aa11.34□□□□□ -0.59
USP53-209ENST00000514665 ZNF770Q6IQ21 691 aaPredicted RBP11.34□□□□□ -0.59
USP53-209ENST00000514665 ZNF321PQ8N8H1 164 aa11.34□□□□□ -0.59
USP53-209ENST00000514665 OR4A16Q8NH70 328 aa11.34□□□□□ -0.59
USP53-209ENST00000514665 CMTM3Q96MX0 182 aa11.34□□□□□ -0.59
USP53-209ENST00000514665 FN3KRPQ9HA64 309 aa11.34□□□□□ -0.59
USP53-209ENST00000514665 DTX4Q9Y2E6 619 aa11.34□□□□□ -0.59
USP53-209ENST00000514665 TRAV8-7A0A075B6U6 113 aa11.34□□□□□ -0.59
USP53-209ENST00000514665 CST7O76096 145 aa11.34□□□□□ -0.59
USP53-209ENST00000514665 WNT11O96014 354 aa11.34□□□□□ -0.59
USP53-209ENST00000514665 GPR3P46089 330 aa11.34□□□□□ -0.59
USP53-209ENST00000514665 RRADP55042 308 aa11.34□□□□□ -0.59
USP53-209ENST00000514665 SSBP1Q04837 148 aaKnown RBP11.34□□□□□ -0.59
USP53-209ENST00000514665 TBC1D28Q2M2D7 210 aa11.34□□□□□ -0.59
USP53-209ENST00000514665 ZFP62Q8NB50 900 aaPredicted RBP11.34□□□□□ -0.59
USP53-209ENST00000514665 OR2I1PQ8NGU4 316 aa11.34□□□□□ -0.59
USP53-209ENST00000514665 GAB2Q9UQC2 676 aa11.34□□□□□ -0.59
USP53-209ENST00000514665 TRIM64BA6NI03 449 aa11.33□□□□□ -0.59
USP53-209ENST00000514665 E5RGE8 158 aa11.33□□□□□ -0.59
USP53-209ENST00000514665 TMEM127O75204 238 aa11.33□□□□□ -0.59
USP53-209ENST00000514665 TXNDC12O95881 172 aa11.33□□□□□ -0.59
USP53-209ENST00000514665 PATE4P0C8F1 98 aa11.33□□□□□ -0.59
USP53-209ENST00000514665 RAB5CP51148 216 aa11.33□□□□□ -0.59
USP53-209ENST00000514665 HLA-BQ31612 363 aa11.33□□□□□ -0.59
USP53-209ENST00000514665 MESTQ5EB52 335 aa11.33□□□□□ -0.59
USP53-209ENST00000514665 DEFB108BQ8NET1 73 aa11.33□□□□□ -0.59
USP53-209ENST00000514665 PP6455Q8WZ26 134 aa11.33□□□□□ -0.59
USP53-209ENST00000514665 C19orf12Q9NSK7 152 aa11.33□□□□□ -0.59
USP53-209ENST00000514665 CES1P1Q9UKY3 287 aa11.33□□□□□ -0.59
USP53-209ENST00000514665 NSG2Q9Y328 171 aa11.33□□□□□ -0.59
USP53-209ENST00000514665 ADRA2CP18825 462 aa11.33□□□□□ -0.6
USP53-209ENST00000514665 AGFG1P52594 562 aaKnown RBP11.33□□□□□ -0.6
USP53-209ENST00000514665 FOXL2P58012 376 aa11.33□□□□□ -0.6
USP53-209ENST00000514665 PLA1AQ53H76 456 aa11.33□□□□□ -0.6
USP53-209ENST00000514665 SLC25A30Q5SVS4 291 aa11.33□□□□□ -0.6
USP53-209ENST00000514665 SPATA46Q5T0L3 261 aa11.33□□□□□ -0.6
USP53-209ENST00000514665 SSX9Q7RTT3 188 aa11.33□□□□□ -0.6
USP53-209ENST00000514665 CNTD2Q9H8S5 307 aa11.33□□□□□ -0.6
USP53-209ENST00000514665 PATZ1Q9HBE1 687 aaKnown RBP11.33□□□□□ -0.6
USP53-209ENST00000514665 PPP1R2P9O14990 202 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms