RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 ZNF764Q96H86 408 aaPredicted RBP3.8□□□□□ -1.8
VCAN-209ENST00000513016 ZNF75AQ96N20 296 aa3.8□□□□□ -1.8
VCAN-209ENST00000513016 NDUFB11Q9NX14 153 aa3.8□□□□□ -1.8
VCAN-209ENST00000513016 BCORQ6W2J9 1755 aa3.8□□□□□ -1.8
VCAN-209ENST00000513016 PPIAL4EA0A075B759 164 aa3.8□□□□□ -1.8
VCAN-209ENST00000513016 PPIAL4DF5H284 164 aa3.8□□□□□ -1.8
VCAN-209ENST00000513016 SDCBPO00560 298 aaPredicted RBP3.8□□□□□ -1.8
VCAN-209ENST00000513016 MT-ND4P03905 459 aa3.8□□□□□ -1.8
VCAN-209ENST00000513016 PPIAL4FP0DN26 164 aa3.8□□□□□ -1.8
VCAN-209ENST00000513016 HOXB3P14651 431 aaPredicted RBP3.8□□□□□ -1.8
VCAN-209ENST00000513016 GDNFP39905 211 aa3.8□□□□□ -1.8
VCAN-209ENST00000513016 MNX1P50219 401 aaPredicted RBP3.8□□□□□ -1.8
VCAN-209ENST00000513016 CHCHD2P9Q5T1J5 151 aaPredicted RBP3.8□□□□□ -1.8
VCAN-209ENST00000513016 RHOXF1Q8NHV9 184 aa3.8□□□□□ -1.8
VCAN-209ENST00000513016 SUN5Q8TC36 379 aa3.8□□□□□ -1.8
VCAN-209ENST00000513016 GPX8Q8TED1 209 aa3.8□□□□□ -1.8
VCAN-209ENST00000513016 ZNF418Q8TF45 676 aaPredicted RBP3.8□□□□□ -1.8
VCAN-209ENST00000513016 UBE2FQ969M7 185 aa3.8□□□□□ -1.8
VCAN-209ENST00000513016 SOX7Q9BT81 388 aa3.8□□□□□ -1.8
VCAN-209ENST00000513016 DPCDQ9BVM2 203 aaPredicted RBP3.8□□□□□ -1.8
VCAN-209ENST00000513016 SFXN3Q9BWM7 321 aa3.8□□□□□ -1.8
VCAN-209ENST00000513016 PRR14Q9BWN1 585 aa3.8□□□□□ -1.8
VCAN-209ENST00000513016 TNFRSF19Q9NS68 423 aa3.8□□□□□ -1.8
VCAN-209ENST00000513016 PPIAL4AQ9Y536 164 aa3.8□□□□□ -1.8
VCAN-209ENST00000513016 TRBV23-1A0A0A0MS06 115 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 S100A4P26447 101 aaKnown RBP3.79□□□□□ -1.8
VCAN-209ENST00000513016 CASP3P42574 277 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 OR3A4PP47883 348 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 ATP5J2P56134 94 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 RPS25P62851 125 aaKnown RBP3.79□□□□□ -1.8
VCAN-209ENST00000513016 FLI1Q01543 452 aaPredicted RBP3.79□□□□□ -1.8
VCAN-209ENST00000513016 GGTLC2Q14390 218 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 SSX9Q7RTT3 188 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 OR2W3Q7Z3T1 314 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 OR52N4Q8NGI2 321 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 ZNF596Q8TC21 504 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 MCHR2Q969V1 340 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 OR8B4Q96RC9 309 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 TTTY12Q9BZ98 90 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 RAB18Q9NP72 206 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 ASF1BQ9NVP2 202 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 ZNF225Q9UK10 706 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 MS4A18H0YCH9 400 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 RPA2P15927 270 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 CA6P23280 308 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 SLC35A2P78381 396 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 MRPS34P82930 218 aaKnown RBP3.79□□□□□ -1.8
VCAN-209ENST00000513016 HMGN3Q15651 99 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 MS4A18Q3C1V0 323 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 CMPK2Q5EBM0 449 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 FAM162BQ5T6X4 162 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 ACSM6Q6P461 480 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 ZNF546Q86UE3 836 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 LYG1Q8N1E2 194 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 OR4F17Q8NGA8 305 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 OR13C8Q8NGS7 320 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 OR4F5Q8NH21 305 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 EXTL1Q92935 676 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 GNPNAT1Q96EK6 184 aaPredicted RBP3.79□□□□□ -1.8
VCAN-209ENST00000513016 OR4F4Q96R69 305 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 OR2B2Q9GZK3 357 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 RNF115Q9Y4L5 304 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 ARPC5O15511 151 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 EPXP11678 715 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 GZMHP20718 246 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 GPM6AP51674 278 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 TAF9Q16594 264 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 OR2M3Q8NG83 312 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 CLDN23Q96B33 292 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 ZNF501Q96CX3 271 aaPredicted RBP3.79□□□□□ -1.8
VCAN-209ENST00000513016 C10orf35Q96D05 121 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 ACTR3CQ9C0K3 210 aaPredicted RBP3.79□□□□□ -1.8
VCAN-209ENST00000513016 TUBB1Q9H4B7 451 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 FAM60AQ9NP50 221 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 GNG13Q9P2W3 67 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 FLVCR1Q9Y5Y0 555 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 DOCK2Q92608 1830 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 TNKS1BP1Q9C0C2 1729 aaKnown RBP3.79□□□□□ -1.8
VCAN-209ENST00000513016 MYH9P35579 1960 aaKnown RBP3.79□□□□□ -1.8
VCAN-209ENST00000513016 TCRBV16S1A1N1A0A5B0 115 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 FOXH1O75593 365 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 ZNF26P17031 533 aaPredicted RBP3.79□□□□□ -1.8
VCAN-209ENST00000513016 ACKR3P25106 362 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 GIFP27352 417 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 CALCRP30988 508 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 CD96P40200 585 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 PTGFRP43088 359 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 DBX2Q6ZNG2 339 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 ADPRHL1Q8NDY3 354 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 OR10K1Q8NGX5 313 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 C17orf50Q8WW18 174 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 ZNF2Q9BSG1 426 aaPredicted RBP3.79□□□□□ -1.8
VCAN-209ENST00000513016 GON7Q9BXV9 100 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 CES1P1Q9UKY3 287 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 IGHV3-64DA0A0J9YX35 117 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 SLC2A10O95528 541 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 CCR9P51686 369 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 EMX1Q04741 257 aaPredicted RBP3.79□□□□□ -1.8
VCAN-209ENST00000513016 OR8G2PQ6IF36 304 aa3.79□□□□□ -1.8
VCAN-209ENST00000513016 OLIG3Q7RTU3 272 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms