RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 FER1L6-AS2Q96M78 137 aa18.45■□□□□ 0.54
CCDC88B-208ENST00000492980 ALX4Q9H161 411 aaPredicted RBP18.45■□□□□ 0.54
CCDC88B-208ENST00000492980 POFUT1Q9H488 388 aa18.45■□□□□ 0.54
CCDC88B-208ENST00000492980 KNTC1P50748 2209 aa18.45■□□□□ 0.54
CCDC88B-208ENST00000492980 MEF2DQ14814 521 aa18.44■□□□□ 0.54
CCDC88B-208ENST00000492980 SLC22A6Q4U2R8 563 aa18.44■□□□□ 0.54
CCDC88B-208ENST00000492980 PIP4P1Q86T03 277 aa18.44■□□□□ 0.54
CCDC88B-208ENST00000492980 MUC20Q8N307 709 aaPredicted RBP18.44■□□□□ 0.54
CCDC88B-208ENST00000492980 PNLDC1Q8NA58 520 aaKnown RBP18.44■□□□□ 0.54
CCDC88B-208ENST00000492980 SLC23A1Q9UHI7 598 aa18.44■□□□□ 0.54
CCDC88B-208ENST00000492980 MED13Q9UHV7 2174 aa18.44■□□□□ 0.54
CCDC88B-208ENST00000492980 PCNX2A6NKB5 2137 aa18.44■□□□□ 0.54
CCDC88B-208ENST00000492980 SOCS1O15524 211 aa18.44■□□□□ 0.54
CCDC88B-208ENST00000492980 CRTAPO75718 401 aaPredicted RBP18.44■□□□□ 0.54
CCDC88B-208ENST00000492980 OR2A4O95047 310 aa18.44■□□□□ 0.54
CCDC88B-208ENST00000492980 ZNF708P17019 499 aa18.44■□□□□ 0.54
CCDC88B-208ENST00000492980 ALDH3B1P43353 468 aa18.44■□□□□ 0.54
CCDC88B-208ENST00000492980 PSG4Q00888 419 aa18.44■□□□□ 0.54
CCDC88B-208ENST00000492980 PLAC9Q5JTB6 97 aa18.44■□□□□ 0.54
CCDC88B-208ENST00000492980 OR5D18Q8NGL1 313 aa18.44■□□□□ 0.54
CCDC88B-208ENST00000492980 FGFBP3Q8TAT2 258 aa18.44■□□□□ 0.54
CCDC88B-208ENST00000492980 OR2A7Q96R45 310 aa18.44■□□□□ 0.54
CCDC88B-208ENST00000492980 TIMM10BQ9Y5J6 103 aa18.44■□□□□ 0.54
CCDC88B-208ENST00000492980 TMEM82A0PJX8 343 aa18.43■□□□□ 0.54
CCDC88B-208ENST00000492980 OR14I1A6ND48 311 aa18.43■□□□□ 0.54
CCDC88B-208ENST00000492980 TOXO94900 526 aa18.43■□□□□ 0.54
CCDC88B-208ENST00000492980 PTGFRP43088 359 aa18.43■□□□□ 0.54
CCDC88B-208ENST00000492980 RNASE10Q5GAN6 216 aaKnown RBP18.43■□□□□ 0.54
CCDC88B-208ENST00000492980 OR52W1Q6IF63 320 aa18.43■□□□□ 0.54
CCDC88B-208ENST00000492980 SLC16A14Q7RTX9 510 aa18.43■□□□□ 0.54
CCDC88B-208ENST00000492980 C1QL2Q7Z5L3 287 aa18.43■□□□□ 0.54
CCDC88B-208ENST00000492980 SKA3Q8IX90 412 aa18.43■□□□□ 0.54
CCDC88B-208ENST00000492980 MDS2Q8NDY4 140 aa18.43■□□□□ 0.54
CCDC88B-208ENST00000492980 OR13C8Q8NGS7 320 aa18.43■□□□□ 0.54
CCDC88B-208ENST00000492980 OR2AE1Q8NHA4 323 aa18.43■□□□□ 0.54
CCDC88B-208ENST00000492980 OR2H1Q9GZK4 316 aa18.43■□□□□ 0.54
CCDC88B-208ENST00000492980 WNT5BQ9H1J7 359 aa18.43■□□□□ 0.54
CCDC88B-208ENST00000492980 SLC2A8Q9NY64 477 aa18.43■□□□□ 0.54
CCDC88B-208ENST00000492980 KCNK7Q9Y2U2 307 aa18.43■□□□□ 0.54
CCDC88B-208ENST00000492980 NOSIPQ9Y314 301 aaKnown RBP18.43■□□□□ 0.54
CCDC88B-208ENST00000492980 DISC1C4P0D8 188 aa18.43■□□□□ 0.54
CCDC88B-208ENST00000492980 SP1P08047 785 aa18.43■□□□□ 0.54
CCDC88B-208ENST00000492980 GSTP1P09211 210 aaKnown RBP18.43■□□□□ 0.54
CCDC88B-208ENST00000492980 NAT2P11245 290 aa18.43■□□□□ 0.54
CCDC88B-208ENST00000492980 S100A1P23297 94 aa18.43■□□□□ 0.54
CCDC88B-208ENST00000492980 HTR5AP47898 357 aa18.43■□□□□ 0.54
CCDC88B-208ENST00000492980 PLGLB1Q02325 96 aa18.43■□□□□ 0.54
CCDC88B-208ENST00000492980 NKPD1Q17RQ9 610 aa18.43■□□□□ 0.54
CCDC88B-208ENST00000492980 LGALSLQ3ZCW2 172 aaPredicted RBP18.43■□□□□ 0.54
CCDC88B-208ENST00000492980 ATP1A1-AS1Q5TC04 95 aa18.43■□□□□ 0.54
CCDC88B-208ENST00000492980 TSPO2Q5TGU0 170 aa18.43■□□□□ 0.54
CCDC88B-208ENST00000492980 PLXDC2Q6UX71 529 aa18.43■□□□□ 0.54
CCDC88B-208ENST00000492980 GALNTL5Q7Z4T8 443 aa18.43■□□□□ 0.54
CCDC88B-208ENST00000492980 GLRX5Q86SX6 157 aa18.43■□□□□ 0.54
CCDC88B-208ENST00000492980 RAB3CQ96E17 227 aa18.43■□□□□ 0.54
CCDC88B-208ENST00000492980 TMEM165Q9HC07 324 aa18.43■□□□□ 0.54
CCDC88B-208ENST00000492980 IFT46Q9NQC8 304 aa18.43■□□□□ 0.54
CCDC88B-208ENST00000492980 GHRLQ9UBU3 117 aa18.43■□□□□ 0.54
CCDC88B-208ENST00000492980 RTTNQ86VV8 2226 aa18.43■□□□□ 0.54
CCDC88B-208ENST00000492980 NME2P1O60361 137 aa18.42■□□□□ 0.54
CCDC88B-208ENST00000492980 TSC22D2O75157 780 aa18.42■□□□□ 0.54
CCDC88B-208ENST00000492980 CSN2P05814 226 aa18.42■□□□□ 0.54
CCDC88B-208ENST00000492980 HIST1H1DP16402 221 aaKnown RBP18.42■□□□□ 0.54
CCDC88B-208ENST00000492980 NME2P22392 152 aa18.42■□□□□ 0.54
CCDC88B-208ENST00000492980 ACKR3P25106 362 aa18.42■□□□□ 0.54
CCDC88B-208ENST00000492980 MPZP25189 248 aa18.42■□□□□ 0.54
CCDC88B-208ENST00000492980 TMEM50BP56557 158 aa18.42■□□□□ 0.54
CCDC88B-208ENST00000492980 PCBD1P61457 104 aa18.42■□□□□ 0.54
CCDC88B-208ENST00000492980 C2orf68Q2NKX9 166 aa18.42■□□□□ 0.54
CCDC88B-208ENST00000492980 SCGB2B2Q4G0G5 96 aa18.42■□□□□ 0.54
CCDC88B-208ENST00000492980 C4orf46Q504U0 113 aa18.42■□□□□ 0.54
CCDC88B-208ENST00000492980 ATPAF1Q5TC12 328 aaPredicted RBP18.42■□□□□ 0.54
CCDC88B-208ENST00000492980 CCDC107Q8WV48 283 aa18.42■□□□□ 0.54
CCDC88B-208ENST00000492980 HAS2Q92819 552 aa18.42■□□□□ 0.54
CCDC88B-208ENST00000492980 REEP6Q96HR9 211 aa18.42■□□□□ 0.54
CCDC88B-208ENST00000492980 URM1Q9BTM9 101 aaKnown RBP18.42■□□□□ 0.54
CCDC88B-208ENST00000492980 EIF3KQ9UBQ5 218 aaKnown RBP18.42■□□□□ 0.54
CCDC88B-208ENST00000492980 DHRS7CA6NNS2 312 aa18.41■□□□□ 0.54
CCDC88B-208ENST00000492980 MRPL33O75394 65 aaKnown RBP18.41■□□□□ 0.54
CCDC88B-208ENST00000492980 IGHV3-9P01782 118 aa18.41■□□□□ 0.54
CCDC88B-208ENST00000492980 TPOP07202 933 aa18.41■□□□□ 0.54
CCDC88B-208ENST00000492980 FCGR2AP12318 317 aa18.41■□□□□ 0.54
CCDC88B-208ENST00000492980 MEOX1P50221 254 aa18.41■□□□□ 0.54
CCDC88B-208ENST00000492980 GNG2P59768 71 aa18.41■□□□□ 0.54
CCDC88B-208ENST00000492980 UBE2MP61081 183 aaKnown RBP18.41■□□□□ 0.54
CCDC88B-208ENST00000492980 RAP2BP61225 183 aa18.41■□□□□ 0.54
CCDC88B-208ENST00000492980 FAM189A2Q15884 450 aa18.41■□□□□ 0.54
CCDC88B-208ENST00000492980 ZNF767PQ75MW2 155 aa18.41■□□□□ 0.54
CCDC88B-208ENST00000492980 CD163Q86VB7 1156 aa18.41■□□□□ 0.54
CCDC88B-208ENST00000492980 SEMA6DQ8NFY4 1073 aa18.41■□□□□ 0.54
CCDC88B-208ENST00000492980 OR2AK2Q8NG84 335 aa18.41■□□□□ 0.54
CCDC88B-208ENST00000492980 OR56B1Q8NGI3 324 aa18.41■□□□□ 0.54
CCDC88B-208ENST00000492980 PIGTQ969N2 578 aa18.41■□□□□ 0.54
CCDC88B-208ENST00000492980 WDR89Q96FK6 387 aaPredicted RBP18.41■□□□□ 0.54
CCDC88B-208ENST00000492980 CST11Q9H112 138 aa18.41■□□□□ 0.54
CCDC88B-208ENST00000492980 MYOZ1Q9NP98 299 aaPredicted RBP18.41■□□□□ 0.54
CCDC88B-208ENST00000492980 KLF13Q9Y2Y9 288 aaPredicted RBP18.41■□□□□ 0.54
CCDC88B-208ENST00000492980 LCATP04180 440 aa18.41■□□□□ 0.54
CCDC88B-208ENST00000492980 OR4E1P0C645 316 aa18.41■□□□□ 0.54
CCDC88B-208ENST00000492980 RPS27AP62979 156 aaKnown RBP18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms