RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 SP140LQ9H930 580 aa11.28□□□□□ -0.6
COL6A3-211ENST00000491233 RNPEPL1Q9HAU8 725 aa11.28□□□□□ -0.6
COL6A3-211ENST00000491233 ACOXLQ9NUZ1 547 aa11.28□□□□□ -0.6
COL6A3-211ENST00000491233 ZNF319Q9P2F9 582 aa11.28□□□□□ -0.6
COL6A3-211ENST00000491233 KAAG1Q9UBP8 84 aa11.28□□□□□ -0.6
COL6A3-211ENST00000491233 DUX4Q9UBX2 424 aa11.28□□□□□ -0.6
COL6A3-211ENST00000491233 MMP24Q9Y5R2 645 aa11.28□□□□□ -0.6
COL6A3-211ENST00000491233 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.27□□□□□ -0.61
COL6A3-211ENST00000491233 KCNAB3O43448 404 aa11.27□□□□□ -0.61
COL6A3-211ENST00000491233 TIPRLO75663 272 aa11.27□□□□□ -0.61
COL6A3-211ENST00000491233 CRYBA1P05813 215 aa11.27□□□□□ -0.61
COL6A3-211ENST00000491233 H2BFMP0C1H6 154 aa11.27□□□□□ -0.61
COL6A3-211ENST00000491233 RAP2AP10114 183 aa11.27□□□□□ -0.61
COL6A3-211ENST00000491233 CFL1P23528 166 aaKnown RBP11.27□□□□□ -0.61
COL6A3-211ENST00000491233 GNALP38405 381 aa11.27□□□□□ -0.61
COL6A3-211ENST00000491233 GSK3AP49840 483 aa11.27□□□□□ -0.61
COL6A3-211ENST00000491233 ARF6P62330 175 aa11.27□□□□□ -0.61
COL6A3-211ENST00000491233 GK3PQ14409 553 aa11.27□□□□□ -0.61
COL6A3-211ENST00000491233 PDCD1Q15116 288 aa11.27□□□□□ -0.61
COL6A3-211ENST00000491233 MICBQ29980 383 aa11.27□□□□□ -0.61
COL6A3-211ENST00000491233 TREML4Q6UXN2 200 aa11.27□□□□□ -0.61
COL6A3-211ENST00000491233 WDR82Q6UXN9 313 aa11.27□□□□□ -0.61
COL6A3-211ENST00000491233 CD300LDQ6UXZ3 194 aa11.27□□□□□ -0.61
COL6A3-211ENST00000491233 SHFQ7M4L6 423 aa11.27□□□□□ -0.61
COL6A3-211ENST00000491233 TIGD4Q8IY51 512 aa11.27□□□□□ -0.61
COL6A3-211ENST00000491233 TMEM86BQ8N661 226 aa11.27□□□□□ -0.61
COL6A3-211ENST00000491233 FAM216BQ8N7L0 139 aa11.27□□□□□ -0.61
COL6A3-211ENST00000491233 SCCPDHQ8NBX0 429 aa11.27□□□□□ -0.61
COL6A3-211ENST00000491233 CSNK2A3Q8NEV1 391 aa11.27□□□□□ -0.61
COL6A3-211ENST00000491233 OR4F5Q8NH21 305 aa11.27□□□□□ -0.61
COL6A3-211ENST00000491233 WFDC12Q8WWY7 111 aa11.27□□□□□ -0.61
COL6A3-211ENST00000491233 ASB9Q96DX5 294 aa11.27□□□□□ -0.61
COL6A3-211ENST00000491233 FAM71F1Q96KD3 344 aaPredicted RBP11.27□□□□□ -0.61
COL6A3-211ENST00000491233 LRGUKQ96M69 825 aa11.27□□□□□ -0.61
COL6A3-211ENST00000491233 CCL13Q99616 98 aa11.27□□□□□ -0.61
COL6A3-211ENST00000491233 OR10A2Q9H208 303 aa11.27□□□□□ -0.61
COL6A3-211ENST00000491233 OR51V1Q9H2C8 321 aa11.27□□□□□ -0.61
COL6A3-211ENST00000491233 RPUSD1Q9UJJ7 312 aaKnown RBP11.27□□□□□ -0.61
COL6A3-211ENST00000491233 PRPF19Q9UMS4 504 aaKnown RBP11.27□□□□□ -0.61
COL6A3-211ENST00000491233 RHBDD3Q9Y3P4 386 aa11.27□□□□□ -0.61
COL6A3-211ENST00000491233 ARRDC5A6NEK1 342 aa11.26□□□□□ -0.61
COL6A3-211ENST00000491233 ANXA2P2A6NMY6 339 aa11.26□□□□□ -0.61
COL6A3-211ENST00000491233 SELENOFO60613 162 aa11.26□□□□□ -0.61
COL6A3-211ENST00000491233 ECDO95905 644 aaPredicted RBP11.26□□□□□ -0.61
COL6A3-211ENST00000491233 CST1P01037 141 aa11.26□□□□□ -0.61
COL6A3-211ENST00000491233 KNG1P01042 644 aa11.26□□□□□ -0.61
COL6A3-211ENST00000491233 MUC1P15941 1255 aaPredicted RBP11.26□□□□□ -0.61
COL6A3-211ENST00000491233 PAICSP22234 425 aaKnown RBP11.26□□□□□ -0.61
COL6A3-211ENST00000491233 CALB2P22676 271 aa11.26□□□□□ -0.61
COL6A3-211ENST00000491233 POU1F1P28069 291 aa11.26□□□□□ -0.61
COL6A3-211ENST00000491233 RELBQ01201 579 aa11.26□□□□□ -0.61
COL6A3-211ENST00000491233 PLBD1Q6P4A8 553 aa11.26□□□□□ -0.61
COL6A3-211ENST00000491233 PDZD9Q8IXQ8 264 aa11.26□□□□□ -0.61
COL6A3-211ENST00000491233 ADGRG5Q8IZF4 528 aa11.26□□□□□ -0.61
COL6A3-211ENST00000491233 KIR3DL3Q8N743 410 aa11.26□□□□□ -0.61
COL6A3-211ENST00000491233 SSMEM1Q8WWF3 244 aa11.26□□□□□ -0.61
COL6A3-211ENST00000491233 ITPKCQ96DU7 683 aa11.26□□□□□ -0.61
COL6A3-211ENST00000491233 SEH1LQ96EE3 360 aa11.26□□□□□ -0.61
COL6A3-211ENST00000491233 CLPTM1LQ96KA5 538 aa11.26□□□□□ -0.61
COL6A3-211ENST00000491233 CCT8L2Q96SF2 557 aa11.26□□□□□ -0.61
COL6A3-211ENST00000491233 MICU1Q9BPX6 476 aa11.26□□□□□ -0.61
COL6A3-211ENST00000491233 CHID1Q9BWS9 393 aa11.26□□□□□ -0.61
COL6A3-211ENST00000491233 RGCCQ9H4X1 137 aa11.26□□□□□ -0.61
COL6A3-211ENST00000491233 TAS2R1Q9NYW7 299 aa11.26□□□□□ -0.61
COL6A3-211ENST00000491233 C1RLQ9NZP8 487 aa11.26□□□□□ -0.61
COL6A3-211ENST00000491233 POMT1Q9Y6A1 747 aa11.26□□□□□ -0.61
COL6A3-211ENST00000491233 A0A0U1RQK1 487 aa11.25□□□□□ -0.61
COL6A3-211ENST00000491233 A0A1B0GUS0 222 aa11.25□□□□□ -0.61
COL6A3-211ENST00000491233 PRR23D1E9PI22 279 aaPredicted RBP11.25□□□□□ -0.61
COL6A3-211ENST00000491233 ACOT8O14734 319 aa11.25□□□□□ -0.61
COL6A3-211ENST00000491233 CDIPTO14735 213 aa11.25□□□□□ -0.61
COL6A3-211ENST00000491233 NDUFA7O95182 113 aa11.25□□□□□ -0.61
COL6A3-211ENST00000491233 LYNP07948 512 aa11.25□□□□□ -0.61
COL6A3-211ENST00000491233 PRR23D2P0DMB1 279 aaPredicted RBP11.25□□□□□ -0.61
COL6A3-211ENST00000491233 NAA10P41227 235 aaPredicted RBP11.25□□□□□ -0.61
COL6A3-211ENST00000491233 PSMA6P60900 246 aaKnown RBP11.25□□□□□ -0.61
COL6A3-211ENST00000491233 GMFBP60983 142 aa11.25□□□□□ -0.61
COL6A3-211ENST00000491233 SRSF4Q08170 494 aaKnown RBP11.25□□□□□ -0.61
COL6A3-211ENST00000491233 PRDX4Q13162 271 aa11.25□□□□□ -0.61
COL6A3-211ENST00000491233 SNCBQ16143 134 aa11.25□□□□□ -0.61
COL6A3-211ENST00000491233 C11orf91Q3C1V1 193 aa11.25□□□□□ -0.61
COL6A3-211ENST00000491233 RHOUQ7L0Q8 258 aa11.25□□□□□ -0.61
COL6A3-211ENST00000491233 SLC36A1Q7Z2H8 476 aa11.25□□□□□ -0.61
COL6A3-211ENST00000491233 VMO1Q7Z5L0 202 aa11.25□□□□□ -0.61
COL6A3-211ENST00000491233 TMEM179BQ7Z7N9 219 aa11.25□□□□□ -0.61
COL6A3-211ENST00000491233 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.25□□□□□ -0.61
COL6A3-211ENST00000491233 GALNT4Q8N4A0 578 aa11.25□□□□□ -0.61
COL6A3-211ENST00000491233 FTMTQ8N4E7 242 aa11.25□□□□□ -0.61
COL6A3-211ENST00000491233 OTOSQ8NHW6 89 aa11.25□□□□□ -0.61
COL6A3-211ENST00000491233 RTL8AQ9BWD3 113 aa11.25□□□□□ -0.61
COL6A3-211ENST00000491233 TLNRD1Q9H1K6 362 aa11.25□□□□□ -0.61
COL6A3-211ENST00000491233 BEX1Q9HBH7 125 aa11.25□□□□□ -0.61
COL6A3-211ENST00000491233 PDP1Q9P0J1 537 aaPredicted RBP11.25□□□□□ -0.61
COL6A3-211ENST00000491233 ONECUT1Q9UBC0 465 aa11.25□□□□□ -0.61
COL6A3-211ENST00000491233 KLHDC2Q9Y2U9 406 aa11.25□□□□□ -0.61
COL6A3-211ENST00000491233 KPTNQ9Y664 436 aa11.25□□□□□ -0.61
COL6A3-211ENST00000491233 A0A1B0GVI7 797 aa11.24□□□□□ -0.61
COL6A3-211ENST00000491233 NKX6-3A6NJ46 265 aa11.24□□□□□ -0.61
COL6A3-211ENST00000491233 ZNF850A8MQ14 1090 aa11.24□□□□□ -0.61
COL6A3-211ENST00000491233 GNGT2O14610 69 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms