RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 PRKXP51817 358 aa10.64□□□□□ -0.71
HDAC6-230ENST00000488543 OPCMLQ14982 345 aa10.64□□□□□ -0.71
HDAC6-230ENST00000488543 FAM27BQ5VT28 67 aa10.64□□□□□ -0.71
HDAC6-230ENST00000488543 DCAF12L2Q5VW00 463 aa10.64□□□□□ -0.71
HDAC6-230ENST00000488543 CFAP161Q6P656 301 aa10.64□□□□□ -0.71
HDAC6-230ENST00000488543 TMEM65Q6PI78 240 aa10.64□□□□□ -0.71
HDAC6-230ENST00000488543 GLDNQ6ZMI3 551 aaPredicted RBP10.64□□□□□ -0.71
HDAC6-230ENST00000488543 LRRC18Q8N456 261 aa10.64□□□□□ -0.71
HDAC6-230ENST00000488543 OR4C16Q8NGL9 310 aa10.64□□□□□ -0.71
HDAC6-230ENST00000488543 CPT1CQ8TCG5 803 aa10.64□□□□□ -0.71
HDAC6-230ENST00000488543 FBXO17Q96EF6 278 aa10.64□□□□□ -0.71
HDAC6-230ENST00000488543 ALKBH3Q96Q83 286 aaPredicted RBP10.64□□□□□ -0.71
HDAC6-230ENST00000488543 C7orf50Q9BRJ6 194 aaKnown RBP10.64□□□□□ -0.71
HDAC6-230ENST00000488543 PLEKHA1Q9HB21 404 aa10.64□□□□□ -0.71
HDAC6-230ENST00000488543 CRLF2Q9HC73 371 aa10.64□□□□□ -0.71
HDAC6-230ENST00000488543 TMEM38BQ9NVV0 291 aa10.64□□□□□ -0.71
HDAC6-230ENST00000488543 TAS2R4Q9NYW5 299 aa10.64□□□□□ -0.71
HDAC6-230ENST00000488543 ZNF319Q9P2F9 582 aa10.64□□□□□ -0.71
HDAC6-230ENST00000488543 NPTNQ9Y639 398 aa10.64□□□□□ -0.71
HDAC6-230ENST00000488543 SMG1Q96Q15 3661 aaKnown RBP10.64□□□□□ -0.71
HDAC6-230ENST00000488543 FREM1Q5H8C1 2179 aa10.64□□□□□ -0.71
HDAC6-230ENST00000488543 TTLL8A6PVC2 850 aa10.64□□□□□ -0.71
HDAC6-230ENST00000488543 CD37P11049 281 aa10.64□□□□□ -0.71
HDAC6-230ENST00000488543 HSD11B1P28845 292 aa10.64□□□□□ -0.71
HDAC6-230ENST00000488543 ZNF121P58317 390 aaPredicted RBP10.64□□□□□ -0.71
HDAC6-230ENST00000488543 TAF13Q15543 124 aa10.64□□□□□ -0.71
HDAC6-230ENST00000488543 RSPO1Q2MKA7 263 aaPredicted RBP10.64□□□□□ -0.71
HDAC6-230ENST00000488543 RIPPLY2Q5TAB7 128 aa10.64□□□□□ -0.71
HDAC6-230ENST00000488543 BAIAP2L2Q6UXY1 529 aa10.64□□□□□ -0.71
HDAC6-230ENST00000488543 GPR137CQ8N3F9 429 aa10.64□□□□□ -0.71
HDAC6-230ENST00000488543 PLPP7Q8NBV4 271 aa10.64□□□□□ -0.71
HDAC6-230ENST00000488543 OR5M9Q8NGP3 310 aa10.64□□□□□ -0.71
HDAC6-230ENST00000488543 OR13C3Q8NGS6 347 aa10.64□□□□□ -0.71
HDAC6-230ENST00000488543 HAVCR1Q96D42 359 aa10.64□□□□□ -0.71
HDAC6-230ENST00000488543 CMTM3Q96MX0 182 aa10.64□□□□□ -0.71
HDAC6-230ENST00000488543 CHST6Q9GZX3 395 aa10.64□□□□□ -0.71
HDAC6-230ENST00000488543 MOB1AQ9H8S9 216 aa10.64□□□□□ -0.71
HDAC6-230ENST00000488543 GPR35Q9HC97 309 aa10.64□□□□□ -0.71
HDAC6-230ENST00000488543 A0A1B0GUH1 482 aa10.63□□□□□ -0.71
HDAC6-230ENST00000488543 ARPC5O15511 151 aa10.63□□□□□ -0.71
HDAC6-230ENST00000488543 SYNGR4O95473 234 aa10.63□□□□□ -0.71
HDAC6-230ENST00000488543 TGM6O95932 706 aa10.63□□□□□ -0.71
HDAC6-230ENST00000488543 IGHG3P01860 377 aa10.63□□□□□ -0.71
HDAC6-230ENST00000488543 CALCBP10092 127 aa10.63□□□□□ -0.71
HDAC6-230ENST00000488543 GUCA1AP43080 201 aaPredicted RBP10.63□□□□□ -0.71
HDAC6-230ENST00000488543 CX3CR1P49238 355 aa10.63□□□□□ -0.71
HDAC6-230ENST00000488543 AP2S1P53680 142 aaPredicted RBP10.63□□□□□ -0.71
HDAC6-230ENST00000488543 H2BFSP57053 126 aa10.63□□□□□ -0.71
HDAC6-230ENST00000488543 GRB2P62993 217 aaKnown RBP10.63□□□□□ -0.71
HDAC6-230ENST00000488543 METTL11BQ5VVY1 283 aa10.63□□□□□ -0.71
HDAC6-230ENST00000488543 ALKAL2Q6UX46 152 aa10.63□□□□□ -0.71
HDAC6-230ENST00000488543 GJC3Q8NFK1 279 aa10.63□□□□□ -0.71
HDAC6-230ENST00000488543 OR8B12Q8NGG6 310 aa10.63□□□□□ -0.71
HDAC6-230ENST00000488543 ZMAT3Q9HA38 289 aaKnown RBP10.63□□□□□ -0.71
HDAC6-230ENST00000488543 SPEF1Q9Y4P9 236 aa10.63□□□□□ -0.71
HDAC6-230ENST00000488543 SPTA1P02549 2419 aa10.63□□□□□ -0.71
HDAC6-230ENST00000488543 RELNP78509 3460 aa10.63□□□□□ -0.71
HDAC6-230ENST00000488543 TRAV18A0A075B6X5 111 aa10.63□□□□□ -0.71
HDAC6-230ENST00000488543 C5orf63A6NC05 138 aa10.63□□□□□ -0.71
HDAC6-230ENST00000488543 IFNA7P01567 189 aa10.63□□□□□ -0.71
HDAC6-230ENST00000488543 CD2P06729 351 aa10.63□□□□□ -0.71
HDAC6-230ENST00000488543 ITGA5P08648 1049 aa10.63□□□□□ -0.71
HDAC6-230ENST00000488543 SLC2A1P11166 492 aa10.63□□□□□ -0.71
HDAC6-230ENST00000488543 ZNF35P13682 527 aa10.63□□□□□ -0.71
HDAC6-230ENST00000488543 PXDC1Q5TGL8 231 aa10.63□□□□□ -0.71
HDAC6-230ENST00000488543 FAM166AQ6J272 317 aa10.63□□□□□ -0.71
HDAC6-230ENST00000488543 CDH24Q86UP0 819 aa10.63□□□□□ -0.71
HDAC6-230ENST00000488543 TUSC5Q8IXB3 177 aa10.63□□□□□ -0.71
HDAC6-230ENST00000488543 COQ8AQ8NI60 647 aa10.63□□□□□ -0.71
HDAC6-230ENST00000488543 ZCCHC14Q8WYQ9 949 aaKnown RBP10.63□□□□□ -0.71
HDAC6-230ENST00000488543 DHRS9Q9BPW9 319 aa10.63□□□□□ -0.71
HDAC6-230ENST00000488543 SOX7Q9BT81 388 aa10.63□□□□□ -0.71
HDAC6-230ENST00000488543 ACTR6Q9GZN1 396 aa10.63□□□□□ -0.71
HDAC6-230ENST00000488543 ZNF275Q9NSD4 429 aaPredicted RBP10.63□□□□□ -0.71
HDAC6-230ENST00000488543 GTF3C1Q12789 2109 aa10.62□□□□□ -0.71
HDAC6-230ENST00000488543 E9PLN8 166 aa10.62□□□□□ -0.71
HDAC6-230ENST00000488543 SHOXO15266 292 aa10.62□□□□□ -0.71
HDAC6-230ENST00000488543 SIGLEC5O15389 551 aa10.62□□□□□ -0.71
HDAC6-230ENST00000488543 IGHV3-9P01782 118 aa10.62□□□□□ -0.71
HDAC6-230ENST00000488543 CST2P09228 141 aa10.62□□□□□ -0.71
HDAC6-230ENST00000488543 CPN1P15169 458 aa10.62□□□□□ -0.71
HDAC6-230ENST00000488543 RAG2P55895 527 aa10.62□□□□□ -0.71
HDAC6-230ENST00000488543 CEACAM16Q2WEN9 425 aa10.62□□□□□ -0.71
HDAC6-230ENST00000488543 ELFN2Q5R3F8 820 aa10.62□□□□□ -0.71
HDAC6-230ENST00000488543 TSPO2Q5TGU0 170 aa10.62□□□□□ -0.71
HDAC6-230ENST00000488543 OR51A2Q8NGJ7 313 aa10.62□□□□□ -0.71
HDAC6-230ENST00000488543 OR51S1Q8NGJ8 323 aa10.62□□□□□ -0.71
HDAC6-230ENST00000488543 DMRTA2Q96SC8 542 aa10.62□□□□□ -0.71
HDAC6-230ENST00000488543 PRRG4Q9BZD6 226 aa10.62□□□□□ -0.71
HDAC6-230ENST00000488543 MS4A7Q9GZW8 240 aaPredicted RBP10.62□□□□□ -0.71
HDAC6-230ENST00000488543 RNF122Q9H9V4 155 aa10.62□□□□□ -0.71
HDAC6-230ENST00000488543 BCO1Q9HAY6 547 aa10.62□□□□□ -0.71
HDAC6-230ENST00000488543 RDH8Q9NYR8 311 aa10.62□□□□□ -0.71
HDAC6-230ENST00000488543 STEAP1Q9UHE8 339 aa10.62□□□□□ -0.71
HDAC6-230ENST00000488543 MCTS1Q9ULC4 181 aaKnown RBP10.62□□□□□ -0.71
HDAC6-230ENST00000488543 SLC5A6Q9Y289 635 aa10.62□□□□□ -0.71
HDAC6-230ENST00000488543 NOSIPQ9Y314 301 aaKnown RBP10.62□□□□□ -0.71
HDAC6-230ENST00000488543 AUP1Q9Y679 476 aa10.62□□□□□ -0.71
HDAC6-230ENST00000488543 ARHGAP21Q5T5U3 1957 aa10.62□□□□□ -0.71
HDAC6-230ENST00000488543 FXYD6-FXYD2A0A087WZ82 144 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms