RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 MPTX1A8MV57 137 aa15.8■□□□□ 0.12
VIM-206ENST00000487938 ADAP1O75689 374 aa15.8■□□□□ 0.12
VIM-206ENST00000487938 PPIAP62937 165 aaKnown RBP15.8■□□□□ 0.12
VIM-206ENST00000487938 TMEM128Q5BJH2 165 aa15.8■□□□□ 0.12
VIM-206ENST00000487938 DTX1Q86Y01 620 aa15.8■□□□□ 0.12
VIM-206ENST00000487938 LRRC18Q8N456 261 aa15.8■□□□□ 0.12
VIM-206ENST00000487938 NARS2Q96I59 477 aaKnown RBP15.8■□□□□ 0.12
VIM-206ENST00000487938 RNF126Q9BV68 326 aa15.8■□□□□ 0.12
VIM-206ENST00000487938 CHCHD2Q9Y6H1 151 aaPredicted RBP15.8■□□□□ 0.12
VIM-206ENST00000487938 NCOA6Q14686 2063 aaPredicted RBP15.8■□□□□ 0.12
VIM-206ENST00000487938 OR5H15A6NDH6 313 aa15.8■□□□□ 0.12
VIM-206ENST00000487938 DKK1O94907 266 aa15.8■□□□□ 0.12
VIM-206ENST00000487938 HTR3BO95264 441 aa15.8■□□□□ 0.12
VIM-206ENST00000487938 WDPCPO95876 746 aa15.8■□□□□ 0.12
VIM-206ENST00000487938 NAT1P18440 290 aa15.8■□□□□ 0.12
VIM-206ENST00000487938 SLC6A9P48067 706 aa15.8■□□□□ 0.12
VIM-206ENST00000487938 KCNMB1Q16558 191 aa15.8■□□□□ 0.12
VIM-206ENST00000487938 FADS6Q8N9I5 356 aa15.8■□□□□ 0.12
VIM-206ENST00000487938 OR56B1Q8NGI3 324 aa15.8■□□□□ 0.12
VIM-206ENST00000487938 OR10A2Q9H208 303 aa15.8■□□□□ 0.12
VIM-206ENST00000487938 ZNF160Q9HCG1 818 aa15.8■□□□□ 0.12
VIM-206ENST00000487938 C19orf25Q9UFG5 118 aaPredicted RBP15.8■□□□□ 0.12
VIM-206ENST00000487938 HDGFL3Q9Y3E1 203 aa15.8■□□□□ 0.12
VIM-206ENST00000487938 G3V3Y1 287 aa15.79■□□□□ 0.12
VIM-206ENST00000487938 K7ESF4 209 aa15.79■□□□□ 0.12
VIM-206ENST00000487938 GP1BAP07359 652 aa15.79■□□□□ 0.12
VIM-206ENST00000487938 AMY2BP19961 511 aa15.79■□□□□ 0.12
VIM-206ENST00000487938 CCL1P22362 96 aa15.79■□□□□ 0.12
VIM-206ENST00000487938 CXCL12P48061 93 aa15.79■□□□□ 0.12
VIM-206ENST00000487938 TAS2R31P59538 309 aa15.79■□□□□ 0.12
VIM-206ENST00000487938 KISS1Q15726 138 aa15.79■□□□□ 0.12
VIM-206ENST00000487938 CLEC18BQ6UXF7 455 aa15.79■□□□□ 0.12
VIM-206ENST00000487938 BHLHE23Q8NDY6 225 aa15.79■□□□□ 0.12
VIM-206ENST00000487938 OR5AP2Q8NGF4 316 aa15.79■□□□□ 0.12
VIM-206ENST00000487938 OR5H2Q8NGV7 314 aa15.79■□□□□ 0.12
VIM-206ENST00000487938 RRNAD1Q96FB5 475 aaKnown RBP15.79■□□□□ 0.12
VIM-206ENST00000487938 LRRC46Q96FV0 321 aa15.79■□□□□ 0.12
VIM-206ENST00000487938 GNRHR2Q96P88 292 aa15.79■□□□□ 0.12
VIM-206ENST00000487938 DNTTIP1Q9H147 329 aa15.79■□□□□ 0.12
VIM-206ENST00000487938 VPS13AQ96RL7 3174 aa15.79■□□□□ 0.12
VIM-206ENST00000487938 MFNGO00587 321 aa15.79■□□□□ 0.12
VIM-206ENST00000487938 TLX3O43711 291 aaPredicted RBP15.79■□□□□ 0.12
VIM-206ENST00000487938 EPHA8P29322 1005 aaPredicted RBP15.79■□□□□ 0.12
VIM-206ENST00000487938 GRB2P62993 217 aaKnown RBP15.79■□□□□ 0.12
VIM-206ENST00000487938 SLC35A1P78382 337 aa15.79■□□□□ 0.12
VIM-206ENST00000487938 VAX1Q5SQQ9 334 aa15.79■□□□□ 0.12
VIM-206ENST00000487938 OR52H1Q8NGJ2 320 aa15.79■□□□□ 0.12
VIM-206ENST00000487938 OR1S2Q8NGQ3 325 aa15.79■□□□□ 0.12
VIM-206ENST00000487938 CLDN23Q96B33 292 aa15.79■□□□□ 0.12
VIM-206ENST00000487938 PHYHIPLQ96FC7 376 aa15.79■□□□□ 0.12
VIM-206ENST00000487938 ZNF385AQ96PM9 386 aaKnown RBP15.79■□□□□ 0.12
VIM-206ENST00000487938 OCSTAMPQ9BR26 566 aa15.79■□□□□ 0.12
VIM-206ENST00000487938 URM1Q9BTM9 101 aaKnown RBP15.79■□□□□ 0.12
VIM-206ENST00000487938 H0YIZ8 118 aa15.78■□□□□ 0.12
VIM-206ENST00000487938 STMND1H3BQB6 276 aa15.78■□□□□ 0.12
VIM-206ENST00000487938 SERPINA2P20848 420 aa15.78■□□□□ 0.12
VIM-206ENST00000487938 GLRA1P23415 457 aa15.78■□□□□ 0.12
VIM-206ENST00000487938 GUCA1AP43080 201 aaPredicted RBP15.78■□□□□ 0.12
VIM-206ENST00000487938 CRIP3Q6Q6R5 217 aa15.78■□□□□ 0.12
VIM-206ENST00000487938 OR13G1Q8NGZ3 307 aa15.78■□□□□ 0.12
VIM-206ENST00000487938 SSC4DQ8WTU2 575 aa15.78■□□□□ 0.12
VIM-206ENST00000487938 SLC25A43Q8WUT9 341 aaPredicted RBP15.78■□□□□ 0.12
VIM-206ENST00000487938 RTBDNQ9BSG5 229 aaPredicted RBP15.78■□□□□ 0.12
VIM-206ENST00000487938 FAM117AQ9C073 453 aa15.78■□□□□ 0.12
VIM-206ENST00000487938 ASF1BQ9NVP2 202 aa15.78■□□□□ 0.12
VIM-206ENST00000487938 ANAPC10Q9UM13 185 aa15.78■□□□□ 0.12
VIM-206ENST00000487938 A0A0B4J2A0 478 aa15.78■□□□□ 0.12
VIM-206ENST00000487938 FAHP16930 419 aa15.78■□□□□ 0.12
VIM-206ENST00000487938 BLVRBP30043 206 aaPredicted RBP15.78■□□□□ 0.12
VIM-206ENST00000487938 EIF1P41567 113 aaKnown RBP15.78■□□□□ 0.12
VIM-206ENST00000487938 PTGFRP43088 359 aa15.78■□□□□ 0.12
VIM-206ENST00000487938 OR3A2P47893 321 aa15.78■□□□□ 0.12
VIM-206ENST00000487938 CSNK1A1P48729 337 aa15.78■□□□□ 0.12
VIM-206ENST00000487938 AKR1C2P52895 323 aa15.78■□□□□ 0.12
VIM-206ENST00000487938 MC2RQ01718 297 aa15.78■□□□□ 0.12
VIM-206ENST00000487938 AKR1C1Q04828 323 aa15.78■□□□□ 0.12
VIM-206ENST00000487938 UBE2V2Q15819 145 aa15.78■□□□□ 0.12
VIM-206ENST00000487938 PNLIPRP3Q17RR3 467 aa15.78■□□□□ 0.12
VIM-206ENST00000487938 ARRDC1Q8N5I2 433 aa15.78■□□□□ 0.12
VIM-206ENST00000487938 JSRP1Q96MG2 331 aaPredicted RBP15.78■□□□□ 0.12
VIM-206ENST00000487938 UCN2Q96RP3 112 aa15.78■□□□□ 0.12
VIM-206ENST00000487938 NMES1Q9C002 83 aa15.78■□□□□ 0.12
VIM-206ENST00000487938 ELL3Q9HB65 397 aaPredicted RBP15.78■□□□□ 0.12
VIM-206ENST00000487938 ZC4H2Q9NQZ6 224 aa15.78■□□□□ 0.12
VIM-206ENST00000487938 SHPKQ9UHJ6 478 aa15.78■□□□□ 0.12
VIM-206ENST00000487938 PCDHB10Q9UN67 800 aa15.78■□□□□ 0.12
VIM-206ENST00000487938 FLVCR1Q9Y5Y0 555 aa15.78■□□□□ 0.12
VIM-206ENST00000487938 TP53I11O14683 189 aa15.77■□□□□ 0.12
VIM-206ENST00000487938 SFT2D2O95562 160 aa15.77■□□□□ 0.12
VIM-206ENST00000487938 PNLIPP16233 465 aa15.77■□□□□ 0.12
VIM-206ENST00000487938 SNU13P55769 128 aaKnown RBP15.77■□□□□ 0.12
VIM-206ENST00000487938 SUPT4H1P63272 117 aaKnown RBP15.77■□□□□ 0.12
VIM-206ENST00000487938 CSNK2A1P68400 391 aaPredicted RBP15.77■□□□□ 0.12
VIM-206ENST00000487938 ANKRD55Q3KP44 614 aa15.77■□□□□ 0.12
VIM-206ENST00000487938 MRPL14Q6P1L8 145 aaKnown RBP15.77■□□□□ 0.12
VIM-206ENST00000487938 MYO7BQ6PIF6 2116 aa15.77■□□□□ 0.12
VIM-206ENST00000487938 TMEM17Q86X19 198 aa15.77■□□□□ 0.12
VIM-206ENST00000487938 PNLDC1Q8NA58 520 aaKnown RBP15.77■□□□□ 0.12
VIM-206ENST00000487938 ZSCAN4Q8NAM6 433 aaPredicted RBP15.77■□□□□ 0.12
VIM-206ENST00000487938 CSNK2A3Q8NEV1 391 aa15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms