RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 REEP6Q96HR9 211 aa12.3□□□□□ -0.44
CUX1-209ENST00000487284 NKX3-1Q99801 234 aaPredicted RBP12.3□□□□□ -0.44
CUX1-209ENST00000487284 C1QTNF5Q9BXJ0 243 aa12.3□□□□□ -0.44
CUX1-209ENST00000487284 TMEM272A0A1B0GTI8 110 aa12.3□□□□□ -0.44
CUX1-209ENST00000487284 EEF1E1-BLOC1S5C9J1V9 151 aa12.3□□□□□ -0.44
CUX1-209ENST00000487284 LDLRAD4O15165 306 aa12.3□□□□□ -0.44
CUX1-209ENST00000487284 PLA2G10O15496 165 aa12.3□□□□□ -0.44
CUX1-209ENST00000487284 EEF1E1O43324 174 aaKnown RBP12.3□□□□□ -0.44
CUX1-209ENST00000487284 GSTZ1O43708 216 aaPredicted RBP12.3□□□□□ -0.44
CUX1-209ENST00000487284 ALDOBP05062 364 aa12.3□□□□□ -0.44
CUX1-209ENST00000487284 SPNP16150 400 aa12.3□□□□□ -0.44
CUX1-209ENST00000487284 IGHV1-2P23083 117 aa12.3□□□□□ -0.44
CUX1-209ENST00000487284 RFX2P48378 723 aa12.3□□□□□ -0.44
CUX1-209ENST00000487284 PTH2RP49190 550 aa12.3□□□□□ -0.44
CUX1-209ENST00000487284 RAB1AP62820 205 aa12.3□□□□□ -0.44
CUX1-209ENST00000487284 ADORA2A-AS1P86434 159 aa12.3□□□□□ -0.44
CUX1-209ENST00000487284 PLA2G7Q13093 441 aa12.3□□□□□ -0.44
CUX1-209ENST00000487284 TBRG1Q3YBR2 411 aa12.3□□□□□ -0.44
CUX1-209ENST00000487284 HIKESHIQ53FT3 197 aa12.3□□□□□ -0.44
CUX1-209ENST00000487284 HACD4Q5VWC8 232 aa12.3□□□□□ -0.44
CUX1-209ENST00000487284 ZNF474Q6S9Z5 364 aaPredicted RBP12.3□□□□□ -0.44
CUX1-209ENST00000487284 RELL2Q8NC24 303 aaPredicted RBP12.3□□□□□ -0.44
CUX1-209ENST00000487284 C19orf18Q8NEA5 215 aa12.3□□□□□ -0.44
CUX1-209ENST00000487284 OR4D6Q8NGJ1 314 aa12.3□□□□□ -0.44
CUX1-209ENST00000487284 OR2AE1Q8NHA4 323 aa12.3□□□□□ -0.44
CUX1-209ENST00000487284 SSC4DQ8WTU2 575 aa12.3□□□□□ -0.44
CUX1-209ENST00000487284 NANOS1Q8WY41 292 aaKnown RBP12.3□□□□□ -0.44
CUX1-209ENST00000487284 CCDC120Q96HB5 630 aa12.3□□□□□ -0.44
CUX1-209ENST00000487284 THAP7Q9BT49 309 aaPredicted RBP12.3□□□□□ -0.44
CUX1-209ENST00000487284 CHST5Q9GZS9 411 aa12.3□□□□□ -0.44
CUX1-209ENST00000487284 CNTD2Q9H8S5 307 aa12.3□□□□□ -0.44
CUX1-209ENST00000487284 MYO18BQ8IUG5 2567 aa12.29□□□□□ -0.44
CUX1-209ENST00000487284 FLNCQ14315 2725 aa12.29□□□□□ -0.44
CUX1-209ENST00000487284 MSTNO14793 375 aa12.29□□□□□ -0.44
CUX1-209ENST00000487284 XRCC2O43543 280 aa12.29□□□□□ -0.44
CUX1-209ENST00000487284 LYZL6O75951 148 aa12.29□□□□□ -0.44
CUX1-209ENST00000487284 CD79AP11912 226 aa12.29□□□□□ -0.44
CUX1-209ENST00000487284 PRF1P14222 555 aa12.29□□□□□ -0.44
CUX1-209ENST00000487284 ARSBP15848 533 aa12.29□□□□□ -0.44
CUX1-209ENST00000487284 FAHP16930 419 aa12.29□□□□□ -0.44
CUX1-209ENST00000487284 COX5AP20674 150 aa12.29□□□□□ -0.44
CUX1-209ENST00000487284 CDK2P24941 298 aa12.29□□□□□ -0.44
CUX1-209ENST00000487284 STOMP27105 288 aa12.29□□□□□ -0.44
CUX1-209ENST00000487284 EFNB2P52799 333 aa12.29□□□□□ -0.44
CUX1-209ENST00000487284 TGFBR3Q03167 851 aa12.29□□□□□ -0.44
CUX1-209ENST00000487284 IZUMO1Q8IYV9 350 aa12.29□□□□□ -0.44
CUX1-209ENST00000487284 SMIM4Q8WVI0 70 aa12.29□□□□□ -0.44
CUX1-209ENST00000487284 YIPF5Q969M3 257 aa12.29□□□□□ -0.44
CUX1-209ENST00000487284 SPSB4Q96A44 273 aa12.29□□□□□ -0.44
CUX1-209ENST00000487284 PTX4Q96A99 478 aa12.29□□□□□ -0.44
CUX1-209ENST00000487284 BOD1Q96IK1 185 aa12.29□□□□□ -0.44
CUX1-209ENST00000487284 POM121L2Q96KW2 1035 aa12.29□□□□□ -0.44
CUX1-209ENST00000487284 C11orf54Q9H0W9 315 aaPredicted RBP12.29□□□□□ -0.44
CUX1-209ENST00000487284 KCNK15Q9H427 330 aa12.29□□□□□ -0.44
CUX1-209ENST00000487284 PIGLQ9Y2B2 252 aa12.29□□□□□ -0.44
CUX1-209ENST00000487284 MRPS7Q9Y2R9 242 aaKnown RBP12.29□□□□□ -0.44
CUX1-209ENST00000487284 IGKV1-9A0A0C4DH69 117 aa12.28□□□□□ -0.44
CUX1-209ENST00000487284 A0A1B0GUH1 482 aa12.28□□□□□ -0.44
CUX1-209ENST00000487284 hCG_38984A0A1B0GV85 526 aa12.28□□□□□ -0.44
CUX1-209ENST00000487284 A8MXE2 369 aa12.28□□□□□ -0.44
CUX1-209ENST00000487284 LANCL1O43813 399 aa12.28□□□□□ -0.44
CUX1-209ENST00000487284 SSX4O60224 188 aa12.28□□□□□ -0.44
CUX1-209ENST00000487284 CTAG2O75638 210 aa12.28□□□□□ -0.44
CUX1-209ENST00000487284 BPNT1O95861 308 aa12.28□□□□□ -0.44
CUX1-209ENST00000487284 ACKR3P25106 362 aa12.28□□□□□ -0.44
CUX1-209ENST00000487284 ZNF93P35789 620 aaPredicted RBP12.28□□□□□ -0.44
CUX1-209ENST00000487284 RANBP1P43487 201 aa12.28□□□□□ -0.44
CUX1-209ENST00000487284 MAP2K3P46734 347 aa12.28□□□□□ -0.44
CUX1-209ENST00000487284 MRPS10P82664 201 aaKnown RBP12.28□□□□□ -0.44
CUX1-209ENST00000487284 DGCR2P98153 550 aa12.28□□□□□ -0.44
CUX1-209ENST00000487284 PLP2Q04941 152 aa12.28□□□□□ -0.44
CUX1-209ENST00000487284 TSC22D1Q15714 1073 aa12.28□□□□□ -0.44
CUX1-209ENST00000487284 GSG1Q2KHT4 349 aa12.28□□□□□ -0.44
CUX1-209ENST00000487284 C4orf17Q53FE4 359 aa12.28□□□□□ -0.44
CUX1-209ENST00000487284 TMEM69Q5SWH9 247 aa12.28□□□□□ -0.44
CUX1-209ENST00000487284 CCBE1Q6UXH8 406 aaPredicted RBP12.28□□□□□ -0.44
CUX1-209ENST00000487284 BEND4Q6ZU67 534 aa12.28□□□□□ -0.44
CUX1-209ENST00000487284 NRARPQ7Z6K4 114 aa12.28□□□□□ -0.44
CUX1-209ENST00000487284 BIVMQ86UB2 503 aa12.28□□□□□ -0.44
CUX1-209ENST00000487284 CXorf67Q86X51 503 aaPredicted RBP12.28□□□□□ -0.44
CUX1-209ENST00000487284 ZNF584Q8IVC4 421 aa12.28□□□□□ -0.44
CUX1-209ENST00000487284 CCDC36Q8IYA8 594 aa12.28□□□□□ -0.44
CUX1-209ENST00000487284 SEMA6DQ8NFY4 1073 aa12.28□□□□□ -0.44
CUX1-209ENST00000487284 C15orf40Q8WUR7 153 aa12.28□□□□□ -0.44
CUX1-209ENST00000487284 AKAP1Q92667 903 aaKnown RBP eCLIP12.28□□□□□ -0.44
CUX1-209ENST00000487284 ZNF75AQ96N20 296 aa12.28□□□□□ -0.44
CUX1-209ENST00000487284 SLC22A4Q9H015 551 aa12.28□□□□□ -0.44
CUX1-209ENST00000487284 PIGMQ9H3S5 423 aa12.28□□□□□ -0.44
CUX1-209ENST00000487284 FBLN5Q9UBX5 448 aa12.28□□□□□ -0.44
CUX1-209ENST00000487284 LINC00854A0A1B0GVQ3 168 aa12.27□□□□□ -0.44
CUX1-209ENST00000487284 XRCC3O43542 346 aa12.27□□□□□ -0.44
CUX1-209ENST00000487284 RAD51DO75771 328 aa12.27□□□□□ -0.44
CUX1-209ENST00000487284 RAB6AP20340 208 aa12.27□□□□□ -0.44
CUX1-209ENST00000487284 INPP1P49441 399 aa12.27□□□□□ -0.44
CUX1-209ENST00000487284 TAS2R20P59543 309 aa12.27□□□□□ -0.44
CUX1-209ENST00000487284 QRFPP83859 136 aa12.27□□□□□ -0.44
CUX1-209ENST00000487284 ZNF92Q03936 586 aa12.27□□□□□ -0.44
CUX1-209ENST00000487284 TNK1Q13470 666 aa12.27□□□□□ -0.44
CUX1-209ENST00000487284 OR8B8Q15620 311 aa12.27□□□□□ -0.44
CUX1-209ENST00000487284 GABRA6Q16445 453 aa12.27□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms