RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 RBM39Q14498 530 aaKnown RBP9.88□□□□□ -0.83
HDAC6-228ENST00000486227 C2orf76Q3KRA6 126 aa9.88□□□□□ -0.83
HDAC6-228ENST00000486227 BOD1Q96IK1 185 aa9.88□□□□□ -0.83
HDAC6-228ENST00000486227 ALKBH3Q96Q83 286 aaPredicted RBP9.88□□□□□ -0.83
HDAC6-228ENST00000486227 SDHCQ99643 169 aaPredicted RBP9.88□□□□□ -0.83
HDAC6-228ENST00000486227 PUS1Q9Y606 427 aaKnown RBP eCLIP9.88□□□□□ -0.83
HDAC6-228ENST00000486227 PDCD11Q14690 1871 aaKnown RBP9.87□□□□□ -0.83
HDAC6-228ENST00000486227 SLC33A1O00400 549 aaPredicted RBP9.87□□□□□ -0.83
HDAC6-228ENST00000486227 CHRM2P08172 466 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 PSMB6P28072 239 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 SSBP1Q04837 148 aaKnown RBP9.87□□□□□ -0.83
HDAC6-228ENST00000486227 ACSM1Q08AH1 577 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 KIAA0141Q14154 515 aaPredicted RBP9.87□□□□□ -0.83
HDAC6-228ENST00000486227 MPPED2Q15777 294 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 TUSC1Q2TAM9 212 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 ZNF626Q68DY1 528 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 STPG2Q8N412 459 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 CPEB3Q8NE35 698 aaKnown RBP9.87□□□□□ -0.83
HDAC6-228ENST00000486227 TSPAN32Q96QS1 320 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 SPIN2AQ99865 258 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 SPIN2BQ9BPZ2 258 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 ZNF71Q9NQZ8 489 aaPredicted RBP9.87□□□□□ -0.83
HDAC6-228ENST00000486227 TIMM10BQ9Y5J6 103 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 ATP23Q9Y6H3 246 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 ANK1P16157 1881 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 A0A1B0GTH9 108 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 ZFPL1O95159 310 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 FABP1P07148 127 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 EDN3P14138 238 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 B4GALT1P15291 398 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 CD82P27701 267 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 ZNF273Q14593 569 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 PLPP5Q8NEB5 264 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 C17orf47Q8NEP4 570 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 OR2Y1Q8NGV0 311 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 OR2V1Q8NHB1 315 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 PTP4A1Q93096 173 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 VWCEQ96DN2 955 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 GHITMQ9H3K2 345 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 ZCCHC4Q9H5U6 513 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 PPP1R2P9O14990 202 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 GSTZ1O43708 216 aaPredicted RBP9.87□□□□□ -0.83
HDAC6-228ENST00000486227 GFRA3O60609 400 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 SEMG1P04279 462 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 UBE2KP61086 200 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 SLC22A25Q6T423 547 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 SARGQ9BW04 601 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 MOB1AQ9H8S9 216 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 CSAG2Q9Y5P2 127 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 SCN5AQ14524 2016 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 SMCO3A2RU48 225 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 CD3DP04234 171 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 HOXA1P49639 335 aaPredicted RBP9.87□□□□□ -0.83
HDAC6-228ENST00000486227 ZNF136P52737 540 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 UCNP55089 124 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 CT55Q8WUE5 264 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 TMEM231Q9H6L2 316 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 EXOSC3Q9NQT5 275 aaKnown RBP9.87□□□□□ -0.83
HDAC6-228ENST00000486227 LRP12Q9Y561 859 aa9.87□□□□□ -0.83
HDAC6-228ENST00000486227 HSPB2A8KAH6 182 aa9.86□□□□□ -0.83
HDAC6-228ENST00000486227 C21orf140B9A014 251 aa9.86□□□□□ -0.83
HDAC6-228ENST00000486227 ADAM10O14672 748 aa9.86□□□□□ -0.83
HDAC6-228ENST00000486227 CTDSPLO15194 276 aa9.86□□□□□ -0.83
HDAC6-228ENST00000486227 CD80P33681 288 aa9.86□□□□□ -0.83
HDAC6-228ENST00000486227 OR8B8Q15620 311 aa9.86□□□□□ -0.83
HDAC6-228ENST00000486227 HSPB2Q16082 182 aa9.86□□□□□ -0.83
HDAC6-228ENST00000486227 SFRP5Q5T4F7 317 aa9.86□□□□□ -0.83
HDAC6-228ENST00000486227 RHOUQ7L0Q8 258 aa9.86□□□□□ -0.83
HDAC6-228ENST00000486227 GREB1Q4ZG55 1949 aa9.86□□□□□ -0.83
HDAC6-228ENST00000486227 IGHV5-10-1A0A0J9YXX1 117 aa9.86□□□□□ -0.83
HDAC6-228ENST00000486227 TCRBV16S1A1N1A0A5B0 115 aa9.86□□□□□ -0.83
HDAC6-228ENST00000486227 TAAR5O14804 337 aa9.86□□□□□ -0.83
HDAC6-228ENST00000486227 NXPH2O95156 264 aa9.86□□□□□ -0.83
HDAC6-228ENST00000486227 LTBRP36941 435 aa9.86□□□□□ -0.83
HDAC6-228ENST00000486227 ZNF121P58317 390 aaPredicted RBP9.86□□□□□ -0.83
HDAC6-228ENST00000486227 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.86□□□□□ -0.83
HDAC6-228ENST00000486227 OVCH2Q7RTZ1 564 aa9.86□□□□□ -0.83
HDAC6-228ENST00000486227 FAM181AQ8N9Y4 354 aa9.86□□□□□ -0.83
HDAC6-228ENST00000486227 PPP1R1CQ8WVI7 109 aa9.86□□□□□ -0.83
HDAC6-228ENST00000486227 PHYHIPLQ96FC7 376 aa9.86□□□□□ -0.83
HDAC6-228ENST00000486227 NELFAQ9H3P2 528 aa9.86□□□□□ -0.83
HDAC6-228ENST00000486227 DNAJC13O75165 2243 aa9.86□□□□□ -0.83
HDAC6-228ENST00000486227 BHLHE40O14503 412 aa9.86□□□□□ -0.83
HDAC6-228ENST00000486227 XRCC3O43542 346 aa9.86□□□□□ -0.83
HDAC6-228ENST00000486227 SP9P0CG40 484 aa9.86□□□□□ -0.83
HDAC6-228ENST00000486227 NDUFA6P56556 154 aa9.86□□□□□ -0.83
HDAC6-228ENST00000486227 SHBQ15464 509 aa9.86□□□□□ -0.83
HDAC6-228ENST00000486227 IGSF11Q5DX21 431 aa9.86□□□□□ -0.83
HDAC6-228ENST00000486227 HIST2H3AQ71DI3 136 aa9.86□□□□□ -0.83
HDAC6-228ENST00000486227 ATG4DQ86TL0 474 aaPredicted RBP9.86□□□□□ -0.83
HDAC6-228ENST00000486227 SLC30A7Q8NEW0 376 aa9.86□□□□□ -0.83
HDAC6-228ENST00000486227 OR5M9Q8NGP3 310 aa9.86□□□□□ -0.83
HDAC6-228ENST00000486227 CPNE4Q96A23 557 aaPredicted RBP9.86□□□□□ -0.83
HDAC6-228ENST00000486227 NKX3-1Q99801 234 aaPredicted RBP9.86□□□□□ -0.83
HDAC6-228ENST00000486227 WFDC6Q9BQY6 131 aa9.86□□□□□ -0.83
HDAC6-228ENST00000486227 TAF9BQ9HBM6 251 aa9.86□□□□□ -0.83
HDAC6-228ENST00000486227 TCFL5Q9UL49 500 aa9.86□□□□□ -0.83
HDAC6-228ENST00000486227 HLA-DQB1P01920 261 aa9.85□□□□□ -0.83
HDAC6-228ENST00000486227 HPXP02790 462 aa9.85□□□□□ -0.83
HDAC6-228ENST00000486227 CTSBP07858 339 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms