RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 CLIC3O95833 236 aa13.38□□□□□ -0.27
UPF3A-208ENST00000484246 CPT2P23786 658 aa13.38□□□□□ -0.27
UPF3A-208ENST00000484246 IL2RGP31785 369 aa13.38□□□□□ -0.27
UPF3A-208ENST00000484246 PMELP40967 661 aa13.38□□□□□ -0.27
UPF3A-208ENST00000484246 MAP2K3P46734 347 aa13.38□□□□□ -0.27
UPF3A-208ENST00000484246 CDH15P55291 814 aa13.38□□□□□ -0.27
UPF3A-208ENST00000484246 BTG1P62324 171 aa13.38□□□□□ -0.27
UPF3A-208ENST00000484246 RIPK1Q13546 671 aa13.38□□□□□ -0.27
UPF3A-208ENST00000484246 MOGAT3Q86VF5 341 aa13.38□□□□□ -0.27
UPF3A-208ENST00000484246 C1orf87Q8N0U7 546 aa13.38□□□□□ -0.27
UPF3A-208ENST00000484246 SYS1Q8N2H4 156 aa13.38□□□□□ -0.27
UPF3A-208ENST00000484246 YIPF7Q8N8F6 280 aa13.38□□□□□ -0.27
UPF3A-208ENST00000484246 CCDC54Q8NEL0 328 aa13.38□□□□□ -0.27
UPF3A-208ENST00000484246 OR51E1Q8TCB6 317 aa13.38□□□□□ -0.27
UPF3A-208ENST00000484246 NRG4Q8WWG1 115 aa13.38□□□□□ -0.27
UPF3A-208ENST00000484246 RAB39BQ96DA2 213 aa13.38□□□□□ -0.27
UPF3A-208ENST00000484246 MSI2Q96DH6 328 aaKnown RBP13.38□□□□□ -0.27
UPF3A-208ENST00000484246 ITPKCQ96DU7 683 aa13.38□□□□□ -0.27
UPF3A-208ENST00000484246 SOX7Q9BT81 388 aa13.38□□□□□ -0.27
UPF3A-208ENST00000484246 PAPOLGQ9BWT3 736 aaKnown RBP13.38□□□□□ -0.27
UPF3A-208ENST00000484246 TLNRD1Q9H1K6 362 aa13.38□□□□□ -0.27
UPF3A-208ENST00000484246 FN3KRPQ9HA64 309 aa13.38□□□□□ -0.27
UPF3A-208ENST00000484246 FGF20Q9NP95 211 aaPredicted RBP13.38□□□□□ -0.27
UPF3A-208ENST00000484246 ACOXLQ9NUZ1 547 aa13.38□□□□□ -0.27
UPF3A-208ENST00000484246 C14orf119Q9NWQ9 140 aa13.38□□□□□ -0.27
UPF3A-208ENST00000484246 TMEM160Q9NX00 188 aa13.38□□□□□ -0.27
UPF3A-208ENST00000484246 RHBDD3Q9Y3P4 386 aa13.38□□□□□ -0.27
UPF3A-208ENST00000484246 CR1P17927 2039 aa13.38□□□□□ -0.27
UPF3A-208ENST00000484246 CSPG4Q6UVK1 2322 aa13.38□□□□□ -0.27
UPF3A-208ENST00000484246 LOC100289279A0A1B0GTE1 492 aa13.37□□□□□ -0.27
UPF3A-208ENST00000484246 A0A1B0GTI1 187 aa13.37□□□□□ -0.27
UPF3A-208ENST00000484246 IRGMA1A4Y4 181 aa13.37□□□□□ -0.27
UPF3A-208ENST00000484246 LRRC30A6NM36 301 aa13.37□□□□□ -0.27
UPF3A-208ENST00000484246 MTRF1O75570 445 aaKnown RBP13.37□□□□□ -0.27
UPF3A-208ENST00000484246 IGHV2-5P01817 119 aa13.37□□□□□ -0.27
UPF3A-208ENST00000484246 ZNF16P17020 682 aaPredicted RBP13.37□□□□□ -0.27
UPF3A-208ENST00000484246 GNALP38405 381 aa13.37□□□□□ -0.27
UPF3A-208ENST00000484246 MVKQ03426 396 aa13.37□□□□□ -0.27
UPF3A-208ENST00000484246 GALEQ14376 348 aa13.37□□□□□ -0.27
UPF3A-208ENST00000484246 KLHL22Q53GT1 634 aa13.37□□□□□ -0.27
UPF3A-208ENST00000484246 AVPI1Q5T686 147 aa13.37□□□□□ -0.27
UPF3A-208ENST00000484246 TMEM42Q69YG0 159 aa13.37□□□□□ -0.27
UPF3A-208ENST00000484246 LRRC28Q86X40 367 aaPredicted RBP13.37□□□□□ -0.27
UPF3A-208ENST00000484246 SPICQ8N5J4 248 aa13.37□□□□□ -0.27
UPF3A-208ENST00000484246 SEMA6DQ8NFY4 1073 aa13.37□□□□□ -0.27
UPF3A-208ENST00000484246 OR52I1Q8NGK6 324 aa13.37□□□□□ -0.27
UPF3A-208ENST00000484246 OR11L1Q8NGX0 322 aa13.37□□□□□ -0.27
UPF3A-208ENST00000484246 TFAP2CQ92754 450 aa13.37□□□□□ -0.27
UPF3A-208ENST00000484246 TREM2Q9NZC2 230 aa13.37□□□□□ -0.27
UPF3A-208ENST00000484246 GNG8Q9UK08 70 aa13.37□□□□□ -0.27
UPF3A-208ENST00000484246 V9GYS6 101 aa13.37□□□□□ -0.27
UPF3A-208ENST00000484246 TANC2Q9HCD6 1990 aa13.36□□□□□ -0.27
UPF3A-208ENST00000484246 TMEM210A6NLX4 147 aa13.36□□□□□ -0.27
UPF3A-208ENST00000484246 ANXA2P2A6NMY6 339 aa13.36□□□□□ -0.27
UPF3A-208ENST00000484246 B4DSR2 109 aa13.36□□□□□ -0.27
UPF3A-208ENST00000484246 GNAO1P09471 354 aa13.36□□□□□ -0.27
UPF3A-208ENST00000484246 UBCP0CG48 685 aaKnown RBP13.36□□□□□ -0.27
UPF3A-208ENST00000484246 CFHR2P36980 270 aa13.36□□□□□ -0.27
UPF3A-208ENST00000484246 MDH2P40926 338 aaKnown RBP13.36□□□□□ -0.27
UPF3A-208ENST00000484246 CCR9P51686 369 aa13.36□□□□□ -0.27
UPF3A-208ENST00000484246 RIPPLY1Q0D2K3 151 aa13.36□□□□□ -0.27
UPF3A-208ENST00000484246 MRPL28Q13084 256 aaKnown RBP13.36□□□□□ -0.27
UPF3A-208ENST00000484246 PRDX4Q13162 271 aa13.36□□□□□ -0.27
UPF3A-208ENST00000484246 ZMYND11Q15326 602 aa13.36□□□□□ -0.27
UPF3A-208ENST00000484246 MPPED2Q15777 294 aa13.36□□□□□ -0.27
UPF3A-208ENST00000484246 SMN1Q16637 294 aaKnown RBP13.36□□□□□ -0.27
UPF3A-208ENST00000484246 TP53I3Q53FA7 332 aa13.36□□□□□ -0.27
UPF3A-208ENST00000484246 FAM76BQ5HYJ3 339 aa13.36□□□□□ -0.27
UPF3A-208ENST00000484246 WDR38Q5JTN6 314 aa13.36□□□□□ -0.27
UPF3A-208ENST00000484246 PRAMEF6Q5VXH4 476 aa13.36□□□□□ -0.27
UPF3A-208ENST00000484246 DOK3Q7L591 496 aa13.36□□□□□ -0.27
UPF3A-208ENST00000484246 WDR86Q86TI4 376 aa13.36□□□□□ -0.27
UPF3A-208ENST00000484246 C8orf59Q8N0T1 100 aaPredicted RBP13.36□□□□□ -0.27
UPF3A-208ENST00000484246 MUC20Q8N307 709 aaPredicted RBP13.36□□□□□ -0.27
UPF3A-208ENST00000484246 LINC01356Q8N9X3 169 aa13.36□□□□□ -0.27
UPF3A-208ENST00000484246 OR14K1Q8NGZ2 314 aa13.36□□□□□ -0.27
UPF3A-208ENST00000484246 OR8S1Q8NH09 359 aa13.36□□□□□ -0.27
UPF3A-208ENST00000484246 ZNF420Q8TAQ5 688 aaPredicted RBP13.36□□□□□ -0.27
UPF3A-208ENST00000484246 CNIH3Q8TBE1 160 aa13.36□□□□□ -0.27
UPF3A-208ENST00000484246 HAVCR2Q8TDQ0 301 aa13.36□□□□□ -0.27
UPF3A-208ENST00000484246 HPSE2Q8WWQ2 592 aa13.36□□□□□ -0.27
UPF3A-208ENST00000484246 OR5P3Q8WZ94 311 aa13.36□□□□□ -0.27
UPF3A-208ENST00000484246 DVL3Q92997 716 aaPredicted RBP13.36□□□□□ -0.27
UPF3A-208ENST00000484246 FAM71F1Q96KD3 344 aaPredicted RBP13.36□□□□□ -0.27
UPF3A-208ENST00000484246 MICU1Q9BPX6 476 aa13.36□□□□□ -0.27
UPF3A-208ENST00000484246 ALG8Q9BVK2 526 aa13.36□□□□□ -0.27
UPF3A-208ENST00000484246 ZNF665Q9H7R5 613 aa13.36□□□□□ -0.27
UPF3A-208ENST00000484246 AMBNQ9NP70 447 aa13.36□□□□□ -0.27
UPF3A-208ENST00000484246 ERVK13-1Q9NX77 482 aa13.36□□□□□ -0.27
UPF3A-208ENST00000484246 SLC22A13Q9Y226 551 aa13.36□□□□□ -0.27
UPF3A-208ENST00000484246 MYRFQ9Y2G1 1151 aa13.36□□□□□ -0.27
UPF3A-208ENST00000484246 ZANQ9Y493 2812 aa13.35□□□□□ -0.27
UPF3A-208ENST00000484246 CHD3Q12873 2000 aaKnown RBP13.35□□□□□ -0.27
UPF3A-208ENST00000484246 A8MV72 311 aaPredicted RBP13.35□□□□□ -0.27
UPF3A-208ENST00000484246 F5H0A9 414 aaPredicted RBP13.35□□□□□ -0.27
UPF3A-208ENST00000484246 H0YHG0 523 aa13.35□□□□□ -0.27
UPF3A-208ENST00000484246 RPP14O95059 124 aaKnown RBP13.35□□□□□ -0.27
UPF3A-208ENST00000484246 PIPP12273 146 aaPredicted RBP13.35□□□□□ -0.27
UPF3A-208ENST00000484246 DCKP27707 260 aa13.35□□□□□ -0.27
UPF3A-208ENST00000484246 OR12D2P58182 307 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms