RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 TAS2R1Q9NYW7 299 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 OR5V1Q9UGF6 321 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 LRCH1Q9Y2L9 728 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 COMMD3-BMI1R4GMX3 469 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 IGHV3-64DA0A0J9YX35 117 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 DHRS12A0PJE2 317 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 GGT3PA6NGU5 568 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 AQP12BA6NM10 295 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 CEACAM18A8MTB9 384 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 A8MXK9 166 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 ZNF878C9JN71 531 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 F5H0A9 414 aaPredicted RBP5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 H3BN98 237 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 ZNF593O00488 134 aaPredicted RBP5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 GNGT2O14610 69 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 GYG2O15488 501 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 MLNRO43193 412 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 GMDSO60547 372 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 VENTXO95231 258 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 FSTL3O95633 263 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 CYB5R3P00387 301 aaPredicted RBP5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 HLA-DPB1P04440 258 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 GYPBP06028 91 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 CLUP10909 449 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 PSKH1P11801 424 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 IRF2P14316 349 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 RPS2P15880 293 aaKnown RBP5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 SPI1P17947 270 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 ADRA2CP18825 462 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 PAICSP22234 425 aaKnown RBP5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 ZFP36P26651 326 aaKnown RBP5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 OTX1P32242 354 aaPredicted RBP5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 GRK5P34947 590 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 RBMXP38159 391 aaKnown RBP5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 CD200P41217 278 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 SLC15A1P46059 708 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 HILS1P60008 231 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 GRB2P62993 217 aaKnown RBP5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 OR8G1Q15617 311 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 PCK2Q16822 640 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 SNAI3Q3KNW1 292 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 DNAL1Q4LDG9 190 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 ARMCX4Q5H9R4 360 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 TEX30Q5JUR7 227 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 TRPM8Q7Z2W7 1104 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 MOGAT3Q86VF5 341 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 AQP12AQ8IXF9 295 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 ADGRG5Q8IZF4 528 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 BPIFB2Q8N4F0 458 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 OR11L1Q8NGX0 322 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 GIPC3Q8TF64 312 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 ZNRF4Q8WWF5 429 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 ERGIC1Q969X5 290 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 SLAMF6Q96DU3 332 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 PLEKHA8Q96JA3 519 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 CLPTM1LQ96KA5 538 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 FEVQ99581 238 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 KCNJ15Q99712 375 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 MRI1Q9BV20 369 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 SUCNR1Q9BXA5 334 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 OPA3Q9H6K4 179 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 CMC2Q9NRP2 79 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 CENPMQ9NSP4 180 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 PDP1Q9P0J1 537 aaPredicted RBP5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 MIOXQ9UGB7 285 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 OPN4Q9UHM6 478 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 GTF2A1LQ9UNN4 478 aa5.69□□□□□ -1.5
CCDC88A-213ENST00000476903 CD300LBA8K4G0 201 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 TRAPPC2LH3BP13 241 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 TRIM77I1YAP6 450 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 XRCC2O43543 280 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 E2F6O75461 281 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 TPPPO94811 219 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 APOC1P02654 83 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 WNT2P09544 360 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 ZNF12P17014 697 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 NAT1P18440 290 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 CA6P23280 308 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 HSD11B1P28845 292 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 CX3CR1P49238 355 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 PRKXP51817 358 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 SEC61A1P61619 476 aaKnown RBP5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 GNB2P62879 340 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 ZNF92Q03936 586 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 MZT1Q08AG7 82 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 ZNF154Q13106 437 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 MAB21L1Q13394 359 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 EIF2B1Q14232 305 aaKnown RBP5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 ZNF404Q494X3 552 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 GLYATL3Q5SZD4 288 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 BTNL3Q6UXE8 466 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 SHFQ7M4L6 423 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 KLBQ86Z14 1044 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 ERI1Q8IV48 349 aaKnown RBP5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 OR8B3Q8NGG8 313 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 OR6N2Q8NGY6 317 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 OR2AE1Q8NHA4 323 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 BCAS4Q8TDM0 211 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 FAM216AQ8WUB2 273 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms