RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 LRTM1Q9HBL6 345 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 B3GAT2Q9NPZ5 323 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 AURKAIP1Q9NWT8 199 aaPredicted RBP4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 NTMQ9P121 344 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 RNF6Q9Y252 685 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 MYH15Q9Y2K3 1946 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 DCHS1Q96JQ0 3298 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 YLPM1P49750 1951 aaKnown RBP4.21□□□□□ -1.73
CCDC88A-209ENST00000456975 ZFHX2Q9C0A1 2572 aaPredicted RBP4.21□□□□□ -1.73
CCDC88A-209ENST00000456975 KMT2BQ9UMN6 2715 aaPredicted RBP4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 TRAV39A0A0B4J263 110 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 TCRBV7S3A2A0A539 114 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 HIDE1A8MVS5 230 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 PPP5D1E7EU14 171 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 RPL36A-HNRNPH2H7BZ11 118 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 ACOT8O14734 319 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 FGF16O43320 207 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 OR7C2O60412 319 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 STK16O75716 305 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 MPZL1O95297 269 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 HPRT1P00492 218 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 IFNA1P01562 189 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 VTNP04004 478 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 EDN1P05305 212 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 HIST1H1EP10412 219 aaKnown RBP4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 NR2F6P10588 404 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 ENGP17813 658 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 KDELR1P24390 212 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 HTR1FP30939 366 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 GSK3BP49841 420 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 PIGPP57054 158 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 TPI1P60174 286 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 BTG2P78543 158 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 CDK5Q00535 292 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 PRKCDQ05655 676 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 GPR18Q14330 331 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 RAB35Q15286 201 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 GABRA6Q16445 453 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 ZNF404Q494X3 552 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 C1QL3Q5VWW1 255 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 B3GNTL1Q67FW5 361 aaPredicted RBP4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 LAIR1Q6GTX8 287 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 GLYATQ6IB77 296 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 CES5AQ6NT32 575 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 PWWP2BQ6NUJ5 590 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 SHC4Q6S5L8 630 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 ENPP6Q6UWR7 440 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 WDR82Q6UXN9 313 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 PRSS48Q7RTY5 328 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 FGFRL1Q8N441 504 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 SLC30A7Q8NEW0 376 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 C16orf52Q8NHV5 167 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 SLC7A13Q8TCU3 470 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 TFB1MQ8WVM0 346 aaKnown RBP4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 MRPS31Q92665 395 aaKnown RBP4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 GALMQ96C23 342 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 ZG16BQ96DA0 208 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 CXorf58Q96LI9 332 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 THTPAQ9BU02 230 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 AMBNQ9NP70 447 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 PIPOXQ9P0Z9 390 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 KIAA1456Q9P272 454 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 P2RX2Q9UBL9 471 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 PSORS1C1Q9UIG5 152 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 PACSIN3Q9UKS6 424 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 OAZ3Q9UMX2 235 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 A4GNTQ9UNA3 340 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 PPIAL4AQ9Y536 164 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 V9GYY9 64 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 KAT6AQ92794 2004 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 ARID2Q68CP9 1835 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 FANCMQ8IYD8 2048 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 IQCMA0A1B0GVH7 501 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 ANKRD20A5PA0PJZ0 165 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 ZNF503-AS2A6NEH8 195 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 TVP23AA6NH52 213 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 A8MVM7 634 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 E7ENX8 843 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 ATP6AP2O75787 350 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 CDS2O95674 445 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 MT-ND4LP03901 98 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 APODP05090 189 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 ISG15P05161 165 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 ADH4P08319 380 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 MPC1LP0DKB6 136 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 IGFBP2P18065 325 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 CR2P20023 1033 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 MYL9P24844 172 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 CD52P31358 61 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 IL2RGP31785 369 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 TAS2R43P59537 309 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 PLP1P60201 277 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 C2orf80Q0P641 193 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 LAMTOR4Q0VGL1 99 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 CDH18Q13634 790 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 JOSD1Q15040 202 aaPredicted RBP4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 LTC4SQ16873 150 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 CEACAM21Q3KPI0 293 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 NIPAL3Q6P499 406 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 FAM159AQ6UWV7 190 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms