RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 GALP22466 123 aa1.89□□□□□ -2.11
USP40-209ENST00000452724 APLNRP35414 380 aa1.89□□□□□ -2.11
USP40-209ENST00000452724 AP1S2P56377 157 aa1.89□□□□□ -2.11
USP40-209ENST00000452724 ELF3P78545 371 aaPredicted RBP1.89□□□□□ -2.11
USP40-209ENST00000452724 RAD51Q06609 339 aa1.89□□□□□ -2.11
USP40-209ENST00000452724 BAMBIQ13145 260 aa1.89□□□□□ -2.11
USP40-209ENST00000452724 IL18Q14116 193 aa1.89□□□□□ -2.11
USP40-209ENST00000452724 FAM53BQ14153 422 aa1.89□□□□□ -2.11
USP40-209ENST00000452724 MFSD14CQ5VZR4 134 aa1.89□□□□□ -2.11
USP40-209ENST00000452724 TMEM136Q6ZRR5 245 aa1.89□□□□□ -2.11
USP40-209ENST00000452724 UNC93AQ86WB7 457 aa1.89□□□□□ -2.11
USP40-209ENST00000452724 OPALINQ96PE5 141 aa1.89□□□□□ -2.11
USP40-209ENST00000452724 EMC6Q9BV81 110 aa1.89□□□□□ -2.11
USP40-209ENST00000452724 ANGPTL4Q9BY76 406 aa1.89□□□□□ -2.11
USP40-209ENST00000452724 PLEKHF2Q9H8W4 249 aa1.89□□□□□ -2.11
USP40-209ENST00000452724 LINC00574Q9H8X3 128 aa1.89□□□□□ -2.11
USP40-209ENST00000452724 LYRM4Q9HD34 91 aa1.89□□□□□ -2.11
USP40-209ENST00000452724 SCN4AP35499 1836 aa1.89□□□□□ -2.11
USP40-209ENST00000452724 KIR2DS1A0A191URI9 304 aa1.88□□□□□ -2.11
USP40-209ENST00000452724 SERTM2A0A1B0GWG4 89 aa1.88□□□□□ -2.11
USP40-209ENST00000452724 LRRIQ4A6NIV6 560 aa1.88□□□□□ -2.11
USP40-209ENST00000452724 CENPBD1B2RD01 187 aa1.88□□□□□ -2.11
USP40-209ENST00000452724 CTNSO60931 367 aa1.88□□□□□ -2.11
USP40-209ENST00000452724 ASGR1P07306 291 aa1.88□□□□□ -2.11
USP40-209ENST00000452724 ZNF33AQ06730 810 aa1.88□□□□□ -2.11
USP40-209ENST00000452724 BTN1A1Q13410 526 aa1.88□□□□□ -2.11
USP40-209ENST00000452724 GABRA6Q16445 453 aa1.88□□□□□ -2.11
USP40-209ENST00000452724 TAF9Q16594 264 aa1.88□□□□□ -2.11
USP40-209ENST00000452724 HADHQ16836 314 aaKnown RBP1.88□□□□□ -2.11
USP40-209ENST00000452724 RPEL1Q2QD12 228 aa1.88□□□□□ -2.11
USP40-209ENST00000452724 C6orf99Q4VX62 202 aa1.88□□□□□ -2.11
USP40-209ENST00000452724 SPIN3Q5JUX0 258 aa1.88□□□□□ -2.11
USP40-209ENST00000452724 OR2T5Q6IEZ7 315 aa1.88□□□□□ -2.11
USP40-209ENST00000452724 RAB43Q86YS6 212 aa1.88□□□□□ -2.11
USP40-209ENST00000452724 MICU2Q8IYU8 434 aa1.88□□□□□ -2.11
USP40-209ENST00000452724 OR2T29Q8NH02 315 aa1.88□□□□□ -2.11
USP40-209ENST00000452724 ITFG1Q8TB96 612 aa1.88□□□□□ -2.11
USP40-209ENST00000452724 ASZ1Q8WWH4 475 aa1.88□□□□□ -2.11
USP40-209ENST00000452724 C9orf72Q96LT7 481 aa1.88□□□□□ -2.11
USP40-209ENST00000452724 MTG1Q9BT17 334 aaPredicted RBP1.88□□□□□ -2.11
USP40-209ENST00000452724 SHANK2-AS3Q9BTD1 123 aa1.88□□□□□ -2.11
USP40-209ENST00000452724 VPS37BQ9H9H4 285 aa1.88□□□□□ -2.11
USP40-209ENST00000452724 IL37Q9NZH6 218 aa1.88□□□□□ -2.11
USP40-209ENST00000452724 ZNF391Q9UJN7 358 aa1.88□□□□□ -2.11
USP40-209ENST00000452724 ZNF229Q9UJW7 825 aa1.88□□□□□ -2.11
USP40-209ENST00000452724 ZNF257Q9Y2Q1 563 aa1.88□□□□□ -2.11
USP40-209ENST00000452724 CAB39Q9Y376 341 aaPredicted RBP1.88□□□□□ -2.11
USP40-209ENST00000452724 NID2Q14112 1375 aa1.87□□□□□ -2.11
USP40-209ENST00000452724 OR6C70A6NIJ9 312 aa1.87□□□□□ -2.11
USP40-209ENST00000452724 CASQ2O14958 399 aaPredicted RBP1.87□□□□□ -2.11
USP40-209ENST00000452724 IGKV1D-16P01601 117 aa1.87□□□□□ -2.11
USP40-209ENST00000452724 P0C880 135 aa1.87□□□□□ -2.11
USP40-209ENST00000452724 NELFEP18615 380 aaKnown RBP1.87□□□□□ -2.11
USP40-209ENST00000452724 RPS5P46782 204 aaKnown RBP1.87□□□□□ -2.11
USP40-209ENST00000452724 GALR1P47211 349 aa1.87□□□□□ -2.11
USP40-209ENST00000452724 OR1G1P47890 313 aa1.87□□□□□ -2.11
USP40-209ENST00000452724 OR2B8PP59922 312 aa1.87□□□□□ -2.11
USP40-209ENST00000452724 MEF2BQ02080 365 aaPredicted RBP1.87□□□□□ -2.11
USP40-209ENST00000452724 IRF8Q02556 426 aa1.87□□□□□ -2.11
USP40-209ENST00000452724 PRKCDQ05655 676 aa1.87□□□□□ -2.11
USP40-209ENST00000452724 OR1Q1Q15612 314 aa1.87□□□□□ -2.11
USP40-209ENST00000452724 TMEM236Q5W0B7 351 aa1.87□□□□□ -2.11
USP40-209ENST00000452724 TBPL2Q6SJ96 375 aa1.87□□□□□ -2.11
USP40-209ENST00000452724 SGPP2Q8IWX5 399 aa1.87□□□□□ -2.11
USP40-209ENST00000452724 KATNAL2Q8IYT4 538 aa1.87□□□□□ -2.11
USP40-209ENST00000452724 COMMD1Q8N668 190 aa1.87□□□□□ -2.11
USP40-209ENST00000452724 SLC25A29Q8N8R3 303 aa1.87□□□□□ -2.11
USP40-209ENST00000452724 OR4M2Q8NGB6 313 aa1.87□□□□□ -2.11
USP40-209ENST00000452724 CA5BP1Q8WTZ4 195 aa1.87□□□□□ -2.11
USP40-209ENST00000452724 APH1AQ96BI3 265 aa1.87□□□□□ -2.11
USP40-209ENST00000452724 RCN3Q96D15 328 aa1.87□□□□□ -2.11
USP40-209ENST00000452724 TVP23CQ96ET8 276 aa1.87□□□□□ -2.11
USP40-209ENST00000452724 SCGB3A2Q96PL1 93 aa1.87□□□□□ -2.11
USP40-209ENST00000452724 SFXN3Q9BWM7 321 aa1.87□□□□□ -2.11
USP40-209ENST00000452724 DYRK4Q9NR20 520 aa1.87□□□□□ -2.11
USP40-209ENST00000452724 TREX1Q9NSU2 369 aa1.87□□□□□ -2.11
USP40-209ENST00000452724 MRPL22Q9NWU5 206 aaKnown RBP1.87□□□□□ -2.11
USP40-209ENST00000452724 TRAV25A0A0B4J276 109 aa1.86□□□□□ -2.11
USP40-209ENST00000452724 CCL15-CCL14A0A0B4J2E2 113 aa1.86□□□□□ -2.11
USP40-209ENST00000452724 PSPHP1O15172 72 aa1.86□□□□□ -2.11
USP40-209ENST00000452724 MPDU1O75352 247 aa1.86□□□□□ -2.11
USP40-209ENST00000452724 CTAG2O75638 210 aa1.86□□□□□ -2.11
USP40-209ENST00000452724 IGLV7-43P04211 117 aa1.86□□□□□ -2.11
USP40-209ENST00000452724 TACSTD2P09758 323 aa1.86□□□□□ -2.11
USP40-209ENST00000452724 ANXA8P13928 327 aa1.86□□□□□ -2.11
USP40-209ENST00000452724 GFAPP14136 432 aa1.86□□□□□ -2.11
USP40-209ENST00000452724 GPR1P46091 355 aa1.86□□□□□ -2.11
USP40-209ENST00000452724 CCL15Q16663 113 aa1.86□□□□□ -2.11
USP40-209ENST00000452724 ANXA8L1Q5VT79 327 aa1.86□□□□□ -2.11
USP40-209ENST00000452724 FAM122BQ7Z309 247 aa1.86□□□□□ -2.11
USP40-209ENST00000452724 KRTAP13-1Q8IUC0 172 aa1.86□□□□□ -2.11
USP40-209ENST00000452724 SLC30A8Q8IWU4 369 aa1.86□□□□□ -2.11
USP40-209ENST00000452724 ORMDL3Q8N138 153 aa1.86□□□□□ -2.11
USP40-209ENST00000452724 LRRC75AQ8NAA5 344 aa1.86□□□□□ -2.11
USP40-209ENST00000452724 INO80EQ8NBZ0 244 aaPredicted RBP1.86□□□□□ -2.11
USP40-209ENST00000452724 OR52N1Q8NH53 320 aa1.86□□□□□ -2.11
USP40-209ENST00000452724 TMEM159Q96B96 161 aa1.86□□□□□ -2.11
USP40-209ENST00000452724 S100PBPQ96BU1 408 aa1.86□□□□□ -2.11
USP40-209ENST00000452724 SEC22CQ9BRL7 303 aa1.86□□□□□ -2.11
USP40-209ENST00000452724 AGMATQ9BSE5 352 aa1.86□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms