RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 ZNF208O43345 1280 aa8.34□□□□□ -1.07
CUX1-206ENST00000437600 LRP3O75074 770 aa8.34□□□□□ -1.07
CUX1-206ENST00000437600 SPDEFO95238 335 aa8.34□□□□□ -1.07
CUX1-206ENST00000437600 HCKP08631 526 aa8.34□□□□□ -1.07
CUX1-206ENST00000437600 RFPL3SP0C7P2 107 aa8.34□□□□□ -1.07
CUX1-206ENST00000437600 VAMP1P23763 118 aa8.34□□□□□ -1.07
CUX1-206ENST00000437600 FAUP35544 74 aaKnown RBP8.34□□□□□ -1.07
CUX1-206ENST00000437600 ZP4Q12836 540 aa8.34□□□□□ -1.07
CUX1-206ENST00000437600 EXT1Q16394 746 aa8.34□□□□□ -1.07
CUX1-206ENST00000437600 SPINK14Q6IE38 97 aa8.34□□□□□ -1.07
CUX1-206ENST00000437600 BRICD5Q6PL45 260 aa8.34□□□□□ -1.07
CUX1-206ENST00000437600 RELL2Q8NC24 303 aaPredicted RBP8.34□□□□□ -1.07
CUX1-206ENST00000437600 OR52H1Q8NGJ2 320 aa8.34□□□□□ -1.07
CUX1-206ENST00000437600 OR5D14Q8NGL3 314 aa8.34□□□□□ -1.07
CUX1-206ENST00000437600 OR6M1Q8NGM8 313 aa8.34□□□□□ -1.07
CUX1-206ENST00000437600 ROBO4Q8WZ75 1007 aa8.34□□□□□ -1.07
CUX1-206ENST00000437600 OPN4Q9UHM6 478 aa8.34□□□□□ -1.07
CUX1-206ENST00000437600 TMEM238LA0A1B0GVL6 79 aa8.34□□□□□ -1.07
CUX1-206ENST00000437600 TMEM82A0PJX8 343 aa8.34□□□□□ -1.07
CUX1-206ENST00000437600 OR2M5A3KFT3 312 aa8.34□□□□□ -1.07
CUX1-206ENST00000437600 B4E171 279 aa8.34□□□□□ -1.07
CUX1-206ENST00000437600 MCRIP1C9JLW8 97 aa8.34□□□□□ -1.07
CUX1-206ENST00000437600 SDCBPO00560 298 aaPredicted RBP8.34□□□□□ -1.07
CUX1-206ENST00000437600 GFRA3O60609 400 aa8.34□□□□□ -1.07
CUX1-206ENST00000437600 NDUFS6O75380 124 aaKnown RBP8.34□□□□□ -1.07
CUX1-206ENST00000437600 TRAPPC6AO75865 159 aa8.34□□□□□ -1.07
CUX1-206ENST00000437600 IGHMP01871 453 aa8.34□□□□□ -1.07
CUX1-206ENST00000437600 NUP62P37198 522 aaPredicted RBP8.34□□□□□ -1.07
CUX1-206ENST00000437600 MRPS10P82664 201 aaKnown RBP8.34□□□□□ -1.07
CUX1-206ENST00000437600 PDCD1Q15116 288 aa8.34□□□□□ -1.07
CUX1-206ENST00000437600 TUSC1Q2TAM9 212 aa8.34□□□□□ -1.07
CUX1-206ENST00000437600 THEM4Q5T1C6 240 aa8.34□□□□□ -1.07
CUX1-206ENST00000437600 OPN5Q6U736 354 aa8.34□□□□□ -1.07
CUX1-206ENST00000437600 ADGRE4PQ86SQ3 457 aa8.34□□□□□ -1.07
CUX1-206ENST00000437600 ADAD2Q8NCV1 583 aaKnown RBP8.34□□□□□ -1.07
CUX1-206ENST00000437600 OR13C8Q8NGS7 320 aa8.34□□□□□ -1.07
CUX1-206ENST00000437600 OR2AE1Q8NHA4 323 aa8.34□□□□□ -1.07
CUX1-206ENST00000437600 ST6GALNAC5Q9BVH7 336 aa8.34□□□□□ -1.07
CUX1-206ENST00000437600 HES7Q9BYE0 225 aa8.34□□□□□ -1.07
CUX1-206ENST00000437600 ZNF581Q9P0T4 197 aa8.34□□□□□ -1.07
CUX1-206ENST00000437600 PRR14LQ5THK1 2151 aa8.34□□□□□ -1.07
CUX1-206ENST00000437600 CCDC187A0A096LP49 1063 aa8.33□□□□□ -1.08
CUX1-206ENST00000437600 ZIC3O60481 467 aa8.33□□□□□ -1.08
CUX1-206ENST00000437600 LPLP06858 475 aa8.33□□□□□ -1.08
CUX1-206ENST00000437600 ZNF20P17024 532 aa8.33□□□□□ -1.08
CUX1-206ENST00000437600 CX3CR1P49238 355 aa8.33□□□□□ -1.08
CUX1-206ENST00000437600 ATPAF1Q5TC12 328 aaPredicted RBP8.33□□□□□ -1.08
CUX1-206ENST00000437600 C9orf135Q5VTT2 229 aa8.33□□□□□ -1.08
CUX1-206ENST00000437600 LINC00696Q6ZRV3 163 aa8.33□□□□□ -1.08
CUX1-206ENST00000437600 DNM1P46Q6ZS02 220 aa8.33□□□□□ -1.08
CUX1-206ENST00000437600 TMPPEQ6ZT21 453 aa8.33□□□□□ -1.08
CUX1-206ENST00000437600 ZNF584Q8IVC4 421 aa8.33□□□□□ -1.08
CUX1-206ENST00000437600 BEST3Q8N1M1 668 aa8.33□□□□□ -1.08
CUX1-206ENST00000437600 THOC3Q96J01 351 aaKnown RBP8.33□□□□□ -1.08
CUX1-206ENST00000437600 TAAR9Q96RI9 348 aa8.33□□□□□ -1.08
CUX1-206ENST00000437600 MRI1Q9BV20 369 aa8.33□□□□□ -1.08
CUX1-206ENST00000437600 DKKL1Q9UK85 242 aa8.33□□□□□ -1.08
CUX1-206ENST00000437600 NPTNQ9Y639 398 aa8.33□□□□□ -1.08
CUX1-206ENST00000437600 A0A0A6YYD4 124 aa8.33□□□□□ -1.08
CUX1-206ENST00000437600 A0A0J9YW62 118 aa8.33□□□□□ -1.08
CUX1-206ENST00000437600 PRAF2O60831 178 aa8.33□□□□□ -1.08
CUX1-206ENST00000437600 AQP8O94778 261 aa8.33□□□□□ -1.08
CUX1-206ENST00000437600 HLA-AP01891 365 aaKnown RBP8.33□□□□□ -1.08
CUX1-206ENST00000437600 FAHP16930 419 aa8.33□□□□□ -1.08
CUX1-206ENST00000437600 RAB3AP20336 220 aa8.33□□□□□ -1.08
CUX1-206ENST00000437600 ACHEP22303 614 aa8.33□□□□□ -1.08
CUX1-206ENST00000437600 MLF1P58340 268 aa8.33□□□□□ -1.08
CUX1-206ENST00000437600 SSTP61278 116 aa8.33□□□□□ -1.08
CUX1-206ENST00000437600 ZNF273Q14593 569 aa8.33□□□□□ -1.08
CUX1-206ENST00000437600 PCK2Q16822 640 aa8.33□□□□□ -1.08
CUX1-206ENST00000437600 FAM74A1Q5RGS3 127 aa8.33□□□□□ -1.08
CUX1-206ENST00000437600 CDH26Q8IXH8 852 aa8.33□□□□□ -1.08
CUX1-206ENST00000437600 NOXO1Q8NFA2 376 aa8.33□□□□□ -1.08
CUX1-206ENST00000437600 MRGPRFQ96AM1 343 aa8.33□□□□□ -1.08
CUX1-206ENST00000437600 RADILQ96JH8 1075 aa8.33□□□□□ -1.08
CUX1-206ENST00000437600 CXorf58Q96LI9 332 aa8.33□□□□□ -1.08
CUX1-206ENST00000437600 POTEKPQ9BYX7 375 aa8.33□□□□□ -1.08
CUX1-206ENST00000437600 CST11Q9H112 138 aa8.33□□□□□ -1.08
CUX1-206ENST00000437600 IFT46Q9NQC8 304 aa8.33□□□□□ -1.08
CUX1-206ENST00000437600 DLL3Q9NYJ7 618 aa8.33□□□□□ -1.08
CUX1-206ENST00000437600 PLA2G3Q9NZ20 509 aa8.33□□□□□ -1.08
CUX1-206ENST00000437600 VSIG4Q9Y279 399 aa8.33□□□□□ -1.08
CUX1-206ENST00000437600 NOP16Q9Y3C1 178 aaKnown RBP8.33□□□□□ -1.08
CUX1-206ENST00000437600 MAB21L2Q9Y586 359 aa8.33□□□□□ -1.08
CUX1-206ENST00000437600 NCKAP5O14513 1909 aa8.33□□□□□ -1.08
CUX1-206ENST00000437600 IGKV1-9A0A0C4DH69 117 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 C13orf42A0A1B0GVH6 325 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 hCG_1807616A0A1W2PRN6 198 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 OR2AT4A6NND4 320 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 TM4SF5O14894 197 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 SSX5O60225 188 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 CRTAPO75718 401 aaPredicted RBP8.32□□□□□ -1.08
CUX1-206ENST00000437600 ZNF735P0CB33 412 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 CD96P40200 585 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 TAS2R19P59542 299 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 DHRS2Q13268 280 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 PLAC9Q5JTB6 97 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 ACER2Q5QJU3 275 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 VASH2Q86V25 355 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 CCDC36Q8IYA8 594 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms