RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 SLC25A47Q6Q0C1 308 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 SPRED2Q7Z698 418 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 LSRQ86X29 649 aaPredicted RBP5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 LFNGQ8NES3 379 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 OR5H2Q8NGV7 314 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 C11orf40Q8WZ69 217 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 GALNT14Q96FL9 552 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 MICU1Q9BPX6 476 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 GINS3Q9BRX5 216 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 TMEM59Q9BXS4 323 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 TCEAL2Q9H3H9 227 aaPredicted RBP5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 TAF9BQ9HBM6 251 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 PNRC2Q9NPJ4 139 aaKnown RBP5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 OR5AC2Q9NZP5 309 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 STRAPQ9Y3F4 350 aaKnown RBP5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 GOLGA4Q13439 2230 aaKnown RBP5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 FER1L5A0AVI2 2057 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 A0A1W2PPC4 97 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 MSGN1A6NI15 193 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 SFTA3P0C7M3 94 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 PGA4P0DJD7 388 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 PGA3P0DJD8 388 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 ZNF17P17021 662 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 AKR1C4P17516 323 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 ZNF121P58317 390 aaPredicted RBP5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 LSM6P62312 80 aaKnown RBP5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 HIST1H3AP68431 136 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 SRSF3P84103 164 aaKnown RBP5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 ERV3-1Q14264 604 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 ANKRD55Q3KP44 614 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 HIST2H3PS2Q5TEC6 136 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 OR10K2Q6IF99 312 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 CRIP3Q6Q6R5 217 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 HIST2H3AQ71DI3 136 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 KCTD9Q7L273 389 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 GKN2Q86XP6 184 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 CBLN2Q8IUK8 224 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 OR13G1Q8NGZ3 307 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 OR6X1Q8NH79 312 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 ZDHHC12Q96GR4 267 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 ABHD14BQ96IU4 210 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 KIRREL1Q96J84 757 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 B3GAT1Q9P2W7 334 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 HSF4Q9ULV5 492 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 PCDHGA1Q9Y5H4 931 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 LHFPL6Q9Y693 200 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 V9GYS6 101 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 PCDH15Q96QU1 1955 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 ATG2BQ96BY7 2078 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 CRYM-AS1A6NIL9 109 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 LMX1BO60663 402 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 MPZL1O95297 269 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 NUDT14O95848 222 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 IFNA2P01563 188 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 CELA2BP08218 269 aaPredicted RBP5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 DANCRP0C864 163 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 THEGLP0DJG4 465 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 ZNF708P17019 499 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 ZNF20P17024 532 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 SNCAP37840 140 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 BEX5Q5H9J7 111 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 SP5Q6BEB4 398 aaPredicted RBP5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 TMEM88Q6PEY1 159 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 D2HGDHQ8N465 521 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 CHST4Q8NCG5 386 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 NOXO1Q8NFA2 376 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 OR10H5Q8NGA6 315 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 OR14K1Q8NGZ2 314 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 PP6455Q8WZ26 134 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 SLC25A36Q96CQ1 311 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 OR10C1Q96KK4 312 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 GAL3ST1Q99999 423 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 SYT3Q9BQG1 590 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 OR8D2Q9GZM6 311 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 OR10A2Q9H208 303 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 ZMAT3Q9HA38 289 aaKnown RBP5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 TREM1Q9NP99 234 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 PNO1Q9NRX1 252 aaKnown RBP5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 FAM212BQ9NTI7 297 aaPredicted RBP5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 AMDHD2Q9Y303 409 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 C1orf196B1AJZ1 125 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 ZNF354AO60765 605 aaPredicted RBP5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 PMP2P02689 132 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 DTYMKP23919 212 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 OTX1P32242 354 aaPredicted RBP5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 LPAR6P43657 344 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 UCP3P55916 312 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 SPEM2Q0P670 501 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 RAB32Q13637 225 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 OR7A5Q15622 319 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 SLC22A6Q4U2R8 563 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 DMRTA1Q5VZB9 504 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 PTCRAQ6ISU1 281 aaPredicted RBP5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 GLIPR1L1Q6UWM5 242 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 DHRS11Q6UWP2 260 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 ASCL4Q6XD76 172 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 LRRC18Q8N456 261 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 CASTOR1Q8WTX7 329 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 HIST1H2BAQ96A08 127 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 CMBLQ96DG6 245 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms